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The map label for this gene is yomI [H]

Identifier: 77458201

GI number: 77458201

Start: 2250228

End: 2250839

Strand: Direct

Name: yomI [H]

Synonym: Pfl01_1974

Alternate gene names: 77458201

Gene position: 2250228-2250839 (Clockwise)

Preceding gene: 77458197

Following gene: 77458202

Centisome position: 34.95

GC content: 64.38

Gene sequence:

>612_bases
ATGATCCATTCATTCACTGCAGGACTGCTCGGCTGCGTGCTGTCGGTCGGTGTCGCGCAAGCCGATGTCTTCGTTTCCAT
GGACGCCAAGGGCAGCTACGTGCTGTCCAACGTCCACCGTCCCGGACGCACTTACGAGCGGGTGATTCGCGAGTCCGATG
CGCCGCTGGTCAGCCTTGACCGGCAACCGCAATTGATCGCCAACCAGCCCTACGCCGAGCTGGTGTCAGCGGCGGCCAGC
GCCAATCACCTGCCCGAGGCTTTGCTGCACGCGGTGATCAAGTCCGAATCCAATTACAACCCCGGTGCCACCTCGCCCAA
GGGCGCCGGCGGACTGATGCAATTGATGCCCGACACCGCCCGCGAGCTGGGGGTGAAAGATGTCTACGACCCCAAGGCCA
ACATCCAGGGCGGGGCCAAATACCTCAAGCGCCTGATGACCCTGTTCGACAACGACATCGCCCTGGCCGTAGCGGCCTAC
AACGCCGGGCCTGACGCGGTGCTCAGCCGCGGCCGGGTGATTCCTCCGTTCGCCGAAACCCAGCGCTATGTCCCGAGCGT
GCTGCGTCAGTACCGGCGCCTGCAGGGGCTGGCGGTGGATGCACCGTTGTAA

Upstream 100 bases:

>100_bases
GGGCTTTTCCAGAGTCGGCACAGTGCTTGCGTACGGCTGATCAACGACGGGTCAGTGGGGCATTTCCCCCAATTTTTCGG
GGCCTGTCAGGGGAGGCCCA

Downstream 100 bases:

>100_bases
AGGATGTCCCCGGTTTCCCCACTTTCGGGGCAAACCCGAGGGCCCGGAAAAGTGGGGAAACGGGTGGGGAATATCCCCCG
GATTCTCAAGTGACCTGTGT

Product: lytic transglycosylase catalytic subunit

Products: 1,6-Anhydrobond [C]

Alternate protein names: NA

Number of amino acids: Translated: 203; Mature: 203

Protein sequence:

>203_residues
MIHSFTAGLLGCVLSVGVAQADVFVSMDAKGSYVLSNVHRPGRTYERVIRESDAPLVSLDRQPQLIANQPYAELVSAAAS
ANHLPEALLHAVIKSESNYNPGATSPKGAGGLMQLMPDTARELGVKDVYDPKANIQGGAKYLKRLMTLFDNDIALAVAAY
NAGPDAVLSRGRVIPPFAETQRYVPSVLRQYRRLQGLAVDAPL

Sequences:

>Translated_203_residues
MIHSFTAGLLGCVLSVGVAQADVFVSMDAKGSYVLSNVHRPGRTYERVIRESDAPLVSLDRQPQLIANQPYAELVSAAAS
ANHLPEALLHAVIKSESNYNPGATSPKGAGGLMQLMPDTARELGVKDVYDPKANIQGGAKYLKRLMTLFDNDIALAVAAY
NAGPDAVLSRGRVIPPFAETQRYVPSVLRQYRRLQGLAVDAPL
>Mature_203_residues
MIHSFTAGLLGCVLSVGVAQADVFVSMDAKGSYVLSNVHRPGRTYERVIRESDAPLVSLDRQPQLIANQPYAELVSAAAS
ANHLPEALLHAVIKSESNYNPGATSPKGAGGLMQLMPDTARELGVKDVYDPKANIQGGAKYLKRLMTLFDNDIALAVAAY
NAGPDAVLSRGRVIPPFAETQRYVPSVLRQYRRLQGLAVDAPL

Specific function: Murein-Degrading Enzyme. Catalyzes The Cleavage Of The Glycosidic Bonds Between N-Acetylmuramic Acid And N- Acetylglucosamine Residues In Peptidoglycan. May Play A Role In Recycling Of Muropeptides During Cell Elongation And/Or Cell Division. [C]

COG id: COG0741

COG function: function code M; Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains)

Gene ontology:

Cell location: Periplasmic Protein. Tightly Associated With The Murein Sacculus [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 10 TPR repeats [H]

Homologues:

Organism=Escherichia coli, GI87082441, Length=141, Percent_Identity=36.1702127659575, Blast_Score=75, Evalue=2e-15,
Organism=Escherichia coli, GI1786405, Length=139, Percent_Identity=31.6546762589928, Blast_Score=64, Evalue=9e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011055
- InterPro:   IPR008258
- InterPro:   IPR016047
- InterPro:   IPR010090
- InterPro:   IPR000189 [H]

Pfam domain/function: PF01551 Peptidase_M23; PF10145 PhageMin_Tail; PF01464 SLT [H]

EC number: 3.2.1.- [C]

Molecular weight: Translated: 21785; Mature: 21785

Theoretical pI: Translated: 8.91; Mature: 8.91

Prosite motif: PS00922 TRANSGLYCOSYLASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIHSFTAGLLGCVLSVGVAQADVFVSMDAKGSYVLSNVHRPGRTYERVIRESDAPLVSLD
CCCCHHHHHHHHHHHHHHHHHEEEEEECCCCCHHHHCCCCCCHHHHHHHHHCCCCEEECC
RQPQLIANQPYAELVSAAASANHLPEALLHAVIKSESNYNPGATSPKGAGGLMQLMPDTA
CCCCHHCCCCHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHCCHHH
RELGVKDVYDPKANIQGGAKYLKRLMTLFDNDIALAVAAYNAGPDAVLSRGRVIPPFAET
HHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHCCCCCCCHHHH
QRYVPSVLRQYRRLQGLAVDAPL
HHHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure
MIHSFTAGLLGCVLSVGVAQADVFVSMDAKGSYVLSNVHRPGRTYERVIRESDAPLVSLD
CCCCHHHHHHHHHHHHHHHHHEEEEEECCCCCHHHHCCCCCCHHHHHHHHHCCCCEEECC
RQPQLIANQPYAELVSAAASANHLPEALLHAVIKSESNYNPGATSPKGAGGLMQLMPDTA
CCCCHHCCCCHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHCCHHH
RELGVKDVYDPKANIQGGAKYLKRLMTLFDNDIALAVAAYNAGPDAVLSRGRVIPPFAET
HHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHCCCCCCCHHHH
QRYVPSVLRQYRRLQGLAVDAPL
HHHHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Muramic Acid Residue (N-Acetylmuramic Acid And N-Acetylglucosamine Residues) [C]

Specific reaction: Cleavage Of The Beta-1,4-Glycosidic Bond Between N-Acetylmuramic Acid And N-Acetylglucosamine Residues, Thereby Conserving The Energy In A Newly Synthesized 1,6-Anhydrobond In The Muramic Acid Residue. [C]

General reaction: Cleavage Of The Beta-1,4-Glycosidic Bond [C]

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]