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The map label for this gene is yhjC [C]

Identifier: 77458197

GI number: 77458197

Start: 2246606

End: 2247505

Strand: Direct

Name: yhjC [C]

Synonym: Pfl01_1970

Alternate gene names: 77458197

Gene position: 2246606-2247505 (Clockwise)

Preceding gene: 77458194

Following gene: 77458201

Centisome position: 34.89

GC content: 64.89

Gene sequence:

>900_bases
ATGAACCCGTTCGAAGACATGCGTATTTTTTGCCAGGTGATGGACTCCGGCAGCTTCACGGCGGCGGCCGATCAGTTGGG
CCTTTCCAAGCAGTTCGTCAGCCGTCGGTTGATGCAACTGGAGGAGCGCCTCGGCGTGCGATTGCTCAACCGTTCGACCC
GGCGCCTGGACGTGACGCCGCTGGGCCAGAGCTATTACGAGTCGGCGCTGCGTTTGCTCGGTGAAGTCGAGTCGGTGGAG
CAGGGCATCGCCGGGCAGACTGCCGAGCCGCGCGGGGCGATTCGCGTGAGTGCGCCGCTGTCGTTTGCGTTGGCCCATCT
GGGCTGTCTGCTGCCGCCGTTTCTGCAGCGTTATCGCGAGGTCACGGTGGAGGTGGACTTGAGCGACCGGCCGGTGGATC
TGCTGGGCGAGGGTTACGACCTGGCGCTGCGTATCGGCGTGCTGGAAGACTCGACCCTGATCGCCCGACGCATCGCGTCA
ATCGAGCGGGTGTACTGCGCCAGTCCTGCTTATCTGGCCGAGCGCGGTGCGCCGGTCAGACCGGAAGATCTGCTGGGCCA
CGACTGTCTGCCTTACGGCCACGGTCGTTCGGTGCAGTGGCGGTTCAACGCGGGGCAGGGCAAGCCGCTGCTGGTGAATG
TCACCGGGCGGATGCGCGTCAACAACGGTGAGTTGCTGCGGGATGCGGCGGTGGCGGGGATGGGGATTACTTATCTGCCG
ACGTTCATCGTTGGCGCGGCGCTGAAGGATGGGCGGCTGGTGCCGGTGCTGGACGAGTTTCGGCCGGAACCGCTGACGCT
GTCGGCGGTGTACCCGCAGCATCGTCAGGCATCACGGCCGGTGCAGGCGTTGATCGAGTTTTTGCGCGAGCGGCTGGATC
AGAATCATGTCGCTCTCTAG

Upstream 100 bases:

>100_bases
TGGGCTTCAGGCCTCAGCAACACCGTGAGCACAGATTAATGAGGTGCCGGAAAGTGAAAAAGCGGCTATAAAGCGTTTAA
CTGTCAACCAGGGAGTGACA

Downstream 100 bases:

>100_bases
GTTTTTTGGTGAACTGGTGGGCACCGATGAGCCCTGTGGGAGTCGGGCTTGCCCGCGATAGCGGTGGGTCAGTCAGTGAT
GCTTTAACTGACCAGGCCTC

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: ORF2 [H]

Number of amino acids: Translated: 299; Mature: 299

Protein sequence:

>299_residues
MNPFEDMRIFCQVMDSGSFTAAADQLGLSKQFVSRRLMQLEERLGVRLLNRSTRRLDVTPLGQSYYESALRLLGEVESVE
QGIAGQTAEPRGAIRVSAPLSFALAHLGCLLPPFLQRYREVTVEVDLSDRPVDLLGEGYDLALRIGVLEDSTLIARRIAS
IERVYCASPAYLAERGAPVRPEDLLGHDCLPYGHGRSVQWRFNAGQGKPLLVNVTGRMRVNNGELLRDAAVAGMGITYLP
TFIVGAALKDGRLVPVLDEFRPEPLTLSAVYPQHRQASRPVQALIEFLRERLDQNHVAL

Sequences:

>Translated_299_residues
MNPFEDMRIFCQVMDSGSFTAAADQLGLSKQFVSRRLMQLEERLGVRLLNRSTRRLDVTPLGQSYYESALRLLGEVESVE
QGIAGQTAEPRGAIRVSAPLSFALAHLGCLLPPFLQRYREVTVEVDLSDRPVDLLGEGYDLALRIGVLEDSTLIARRIAS
IERVYCASPAYLAERGAPVRPEDLLGHDCLPYGHGRSVQWRFNAGQGKPLLVNVTGRMRVNNGELLRDAAVAGMGITYLP
TFIVGAALKDGRLVPVLDEFRPEPLTLSAVYPQHRQASRPVQALIEFLRERLDQNHVAL
>Mature_299_residues
MNPFEDMRIFCQVMDSGSFTAAADQLGLSKQFVSRRLMQLEERLGVRLLNRSTRRLDVTPLGQSYYESALRLLGEVESVE
QGIAGQTAEPRGAIRVSAPLSFALAHLGCLLPPFLQRYREVTVEVDLSDRPVDLLGEGYDLALRIGVLEDSTLIARRIAS
IERVYCASPAYLAERGAPVRPEDLLGHDCLPYGHGRSVQWRFNAGQGKPLLVNVTGRMRVNNGELLRDAAVAGMGITYLP
TFIVGAALKDGRLVPVLDEFRPEPLTLSAVYPQHRQASRPVQALIEFLRERLDQNHVAL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693193, Length=310, Percent_Identity=35.1612903225806, Blast_Score=171, Evalue=5e-44,
Organism=Escherichia coli, GI1786401, Length=290, Percent_Identity=35.5172413793103, Blast_Score=164, Evalue=6e-42,
Organism=Escherichia coli, GI87081978, Length=300, Percent_Identity=33.3333333333333, Blast_Score=155, Evalue=2e-39,
Organism=Escherichia coli, GI1789639, Length=290, Percent_Identity=31.7241379310345, Blast_Score=152, Evalue=3e-38,
Organism=Escherichia coli, GI1789440, Length=289, Percent_Identity=32.1799307958478, Blast_Score=146, Evalue=2e-36,
Organism=Escherichia coli, GI1787128, Length=287, Percent_Identity=29.2682926829268, Blast_Score=132, Evalue=2e-32,
Organism=Escherichia coli, GI1787589, Length=291, Percent_Identity=29.553264604811, Blast_Score=124, Evalue=1e-29,
Organism=Escherichia coli, GI1790011, Length=298, Percent_Identity=25.8389261744966, Blast_Score=87, Evalue=2e-18,
Organism=Escherichia coli, GI1789173, Length=252, Percent_Identity=26.5873015873016, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI1788481, Length=294, Percent_Identity=27.5510204081633, Blast_Score=69, Evalue=5e-13,
Organism=Escherichia coli, GI157672245, Length=116, Percent_Identity=33.6206896551724, Blast_Score=65, Evalue=5e-12,
Organism=Escherichia coli, GI1786448, Length=295, Percent_Identity=27.1186440677966, Blast_Score=63, Evalue=2e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33162; Mature: 33162

Theoretical pI: Translated: 7.03; Mature: 7.03

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNPFEDMRIFCQVMDSGSFTAAADQLGLSKQFVSRRLMQLEERLGVRLLNRSTRRLDVTP
CCCHHHHHHHHHHHCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCC
LGQSYYESALRLLGEVESVEQGIAGQTAEPRGAIRVSAPLSFALAHLGCLLPPFLQRYRE
CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEECCHHHHHHHHHHHHHHHHHHHHHH
VTVEVDLSDRPVDLLGEGYDLALRIGVLEDSTLIARRIASIERVYCASPAYLAERGAPVR
EEEEEECCCCCHHHHCCCEEEEEEEEECCCHHHHHHHHHHHHHHHHCCCHHHHHCCCCCC
PEDLLGHDCLPYGHGRSVQWRFNAGQGKPLLVNVTGRMRVNNGELLRDAAVAGMGITYLP
HHHHCCCCCCCCCCCCEEEEEEECCCCCEEEEEEECEEEECCCHHHHHHHHHCCCHHHHH
TFIVGAALKDGRLVPVLDEFRPEPLTLSAVYPQHRQASRPVQALIEFLRERLDQNHVAL
HHHHHHHCCCCCEEEEHHHCCCCCEEEEECCCCHHHHCCHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MNPFEDMRIFCQVMDSGSFTAAADQLGLSKQFVSRRLMQLEERLGVRLLNRSTRRLDVTP
CCCHHHHHHHHHHHCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCC
LGQSYYESALRLLGEVESVEQGIAGQTAEPRGAIRVSAPLSFALAHLGCLLPPFLQRYRE
CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEECCHHHHHHHHHHHHHHHHHHHHHH
VTVEVDLSDRPVDLLGEGYDLALRIGVLEDSTLIARRIASIERVYCASPAYLAERGAPVR
EEEEEECCCCCHHHHCCCEEEEEEEEECCCHHHHHHHHHHHHHHHHCCCHHHHHCCCCCC
PEDLLGHDCLPYGHGRSVQWRFNAGQGKPLLVNVTGRMRVNNGELLRDAAVAGMGITYLP
HHHHCCCCCCCCCCCCEEEEEEECCCCCEEEEEEECEEEECCCHHHHHHHHHCCCHHHHH
TFIVGAALKDGRLVPVLDEFRPEPLTLSAVYPQHRQASRPVQALIEFLRERLDQNHVAL
HHHHHHHCCCCCEEEEHHHCCCCCEEEEECCCCHHHHCCHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8635745; 7542800 [H]