| Definition | Pseudomonas fluorescens Pf0-1 chromosome, complete genome. |
|---|---|
| Accession | NC_007492 |
| Length | 6,438,405 |
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The map label for this gene is yjiJ [C]
Identifier: 77458180
GI number: 77458180
Start: 2227331
End: 2228551
Strand: Reverse
Name: yjiJ [C]
Synonym: Pfl01_1953
Alternate gene names: 77458180
Gene position: 2228551-2227331 (Counterclockwise)
Preceding gene: 77458182
Following gene: 77458179
Centisome position: 34.61
GC content: 64.21
Gene sequence:
>1221_bases ATGCACACTTCAATTGCTTCGCCCGAACGTCCGGACACAAGTGTCTGGCTGGCGATCTTCGCCGGACTCTGCGCCAGCCT GGTCAGCATCGGTCTGGCGCGTTTCGCCTACACACCGCTGATCCCTTCGCTGATTCAGGCGCAGTGGTTTTCCGCCCATG ATGTGGTCTATCTCGGCGCGGCCAATCTGGTCGGTTACCTGATCGGCGCCCTCCTCGGCCGCCCGCTGGCACGCCGGCTT ACCCAGAGAAACGCTCTGCGCCTGATGATGCTGGCGGTGACCGTGGCGTTTTTTGCCTGTGCGTACCCCGTGTCGGTGAG TTGGTATTTCGGCTGGCGCCTGCTGTCGGGAATCGCGGGCGGCGCGATCATGGTGCTGGTGGCTGCGACTGTATTGCCCC ATGTACCGGCCGCGCGCAAAGGCCTGGCCAGTGGGGCGATTTTCCTCGGCATCGGTCTGGGCATCGCCGGCTCGGGCACG ATCGTTCCGCTGCTGTTGAGCCTGGGCTTGCAAGCAACGTGGCTGGGATTGGGCGCTTTGTCGCTGGCACTGACGGCATT GAGCTGGTTCGGCTGGCCCTCGGAGCTGCCCCATGCAACCACCGCAACGGCTCAGGTGGAACCGGTCGAGCCGACACCGC CCGCTGTTTATCTGCTGTTTGCCCAGTACGCATTCATGGCTGCCGGGCTGGTACCGGCCATGGTCTTTCTGGTGGATTAC GTCGCCCGTGGCCTGGGCGCCGGGGCGCACGTCGGCGCGCTGATCTGGGTCATGTACGGTCTGGGCGCCATCGTCGGCCC GGTGAGTTATGGCTTTCTCGCCGACCACCTCGGCGCGCGGACCGGCATTCGTGTGGTGCTGGTGGTGCAGGCGATCACCC TGGGTTTGCTGGCGGTTTCGCATTCGTTCCTGGCGTTGGCGCTGCTGGCGGTGGTCCTCGGTTCCTTTCCACCGGGCATT GTGCCGCTGGCATTGGCTCGGGTGCATGAGCTGGTGCCGGATCACCATCGCCAACAGGTGGCGTGGAGCCGGGCCACAGT GTCGTTCGCCACGTTTCAGGCGCTGGCCGGGTTCGCCTATTCGGCGCTGTTCAACGCCACGGGCGGACAGCATGTGTTGC TCTTCGTGATAGCCGGCGGTGCCATCTTGATCGCTCTGATACTTGAGTACGCCATGAAATTGCTGCCCTCCTCCGTCGAA CAACGCTGCTGCGCCGAATGA
Upstream 100 bases:
>100_bases TTGATGCATAAACGCATCACTATCACGAAAACTCGCTGCATTAACGCAGCAACGATAGCCGATATGCTGGGCGCCATAAA CCTTTCAAAGGATTGCCGTG
Downstream 100 bases:
>100_bases CGGGAATCATTGCGCCCTGACTGCGTTCCCATCTACTGATCACTTTTTCAAGAGGAATCGAAAATGACGTTGCCCAATGA AATGACCCGAATCGAAATCA
Product: hypothetical protein
Products: NA
Alternate protein names: Facilitator Family Transporter; Facilitator Superfamily Protein; Facilitator Superfamily Transporter; Transporter-Like Membrane Protein; Facilitator Superfamily Permease
Number of amino acids: Translated: 406; Mature: 406
Protein sequence:
>406_residues MHTSIASPERPDTSVWLAIFAGLCASLVSIGLARFAYTPLIPSLIQAQWFSAHDVVYLGAANLVGYLIGALLGRPLARRL TQRNALRLMMLAVTVAFFACAYPVSVSWYFGWRLLSGIAGGAIMVLVAATVLPHVPAARKGLASGAIFLGIGLGIAGSGT IVPLLLSLGLQATWLGLGALSLALTALSWFGWPSELPHATTATAQVEPVEPTPPAVYLLFAQYAFMAAGLVPAMVFLVDY VARGLGAGAHVGALIWVMYGLGAIVGPVSYGFLADHLGARTGIRVVLVVQAITLGLLAVSHSFLALALLAVVLGSFPPGI VPLALARVHELVPDHHRQQVAWSRATVSFATFQALAGFAYSALFNATGGQHVLLFVIAGGAILIALILEYAMKLLPSSVE QRCCAE
Sequences:
>Translated_406_residues MHTSIASPERPDTSVWLAIFAGLCASLVSIGLARFAYTPLIPSLIQAQWFSAHDVVYLGAANLVGYLIGALLGRPLARRL TQRNALRLMMLAVTVAFFACAYPVSVSWYFGWRLLSGIAGGAIMVLVAATVLPHVPAARKGLASGAIFLGIGLGIAGSGT IVPLLLSLGLQATWLGLGALSLALTALSWFGWPSELPHATTATAQVEPVEPTPPAVYLLFAQYAFMAAGLVPAMVFLVDY VARGLGAGAHVGALIWVMYGLGAIVGPVSYGFLADHLGARTGIRVVLVVQAITLGLLAVSHSFLALALLAVVLGSFPPGI VPLALARVHELVPDHHRQQVAWSRATVSFATFQALAGFAYSALFNATGGQHVLLFVIAGGAILIALILEYAMKLLPSSVE QRCCAE >Mature_406_residues MHTSIASPERPDTSVWLAIFAGLCASLVSIGLARFAYTPLIPSLIQAQWFSAHDVVYLGAANLVGYLIGALLGRPLARRL TQRNALRLMMLAVTVAFFACAYPVSVSWYFGWRLLSGIAGGAIMVLVAATVLPHVPAARKGLASGAIFLGIGLGIAGSGT IVPLLLSLGLQATWLGLGALSLALTALSWFGWPSELPHATTATAQVEPVEPTPPAVYLLFAQYAFMAAGLVPAMVFLVDY VARGLGAGAHVGALIWVMYGLGAIVGPVSYGFLADHLGARTGIRVVLVVQAITLGLLAVSHSFLALALLAVVLGSFPPGI VPLALARVHELVPDHHRQQVAWSRATVSFATFQALAGFAYSALFNATGGQHVLLFVIAGGAILIALILEYAMKLLPSSVE QRCCAE
Specific function: Unknown
COG id: COG0477
COG function: function code GEPR; Permeases of the major facilitator superfamily
Gene ontology:
Cell location: Integral Membrane Protein [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 42467; Mature: 42467
Theoretical pI: Translated: 9.08; Mature: 9.08
Prosite motif: PS50850 MFS
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MHTSIASPERPDTSVWLAIFAGLCASLVSIGLARFAYTPLIPSLIQAQWFSAHDVVYLGA CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEHH ANLVGYLIGALLGRPLARRLTQRNALRLMMLAVTVAFFACAYPVSVSWYFGWRLLSGIAG HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC GAIMVLVAATVLPHVPAARKGLASGAIFLGIGLGIAGSGTIVPLLLSLGLQATWLGLGAL HHHHHHHHHHHHCCCCHHHHHHHCCHHHHHCCCCCCCCCHHHHHHHHHCCHHHHHHHHHH SLALTALSWFGWPSELPHATTATAQVEPVEPTPPAVYLLFAQYAFMAAGLVPAMVFLVDY HHHHHHHHHCCCCCCCCCCCCCCCEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH VARGLGAGAHVGALIWVMYGLGAIVGPVSYGFLADHLGARTGIRVVLVVQAITLGLLAVS HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH HSFLALALLAVVLGSFPPGIVPLALARVHELVPDHHRQQVAWSRATVSFATFQALAGFAY HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH SALFNATGGQHVLLFVIAGGAILIALILEYAMKLLPSSVEQRCCAE HHHHHCCCCCEEEEEEHHHHHHHHHHHHHHHHHHCCHHHHHHHCCC >Mature Secondary Structure MHTSIASPERPDTSVWLAIFAGLCASLVSIGLARFAYTPLIPSLIQAQWFSAHDVVYLGA CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEHH ANLVGYLIGALLGRPLARRLTQRNALRLMMLAVTVAFFACAYPVSVSWYFGWRLLSGIAG HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC GAIMVLVAATVLPHVPAARKGLASGAIFLGIGLGIAGSGTIVPLLLSLGLQATWLGLGAL HHHHHHHHHHHHCCCCHHHHHHHCCHHHHHCCCCCCCCCHHHHHHHHHCCHHHHHHHHHH SLALTALSWFGWPSELPHATTATAQVEPVEPTPPAVYLLFAQYAFMAAGLVPAMVFLVDY HHHHHHHHHCCCCCCCCCCCCCCCEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH VARGLGAGAHVGALIWVMYGLGAIVGPVSYGFLADHLGARTGIRVVLVVQAITLGLLAVS HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH HSFLALALLAVVLGSFPPGIVPLALARVHELVPDHHRQQVAWSRATVSFATFQALAGFAY HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH SALFNATGGQHVLLFVIAGGAILIALILEYAMKLLPSSVEQRCCAE HHHHHCCCCCEEEEEEHHHHHHHHHHHHHHHHHHCCHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA