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The map label for this gene is rbsC [H]

Identifier: 77458148

GI number: 77458148

Start: 2193634

End: 2194611

Strand: Direct

Name: rbsC [H]

Synonym: Pfl01_1921

Alternate gene names: 77458148

Gene position: 2193634-2194611 (Clockwise)

Preceding gene: 77458147

Following gene: 77458149

Centisome position: 34.07

GC content: 60.43

Gene sequence:

>978_bases
ATGAAAACTGCATCTTCCGCCGGCAAATCCAGTGGCAATTTCTACGGCCTCGGCACTTATCTGGGCCTCGCCGGCGCATT
GCTGGCAATGATTGCGCTGTTCTCGGTCATGAGCAGCCATTTCCTGTCATATAACACCTTCAGCACCCTGGCCAACCAGA
TTCCCGACCTGATGGTGCTGGCGGTGGGCATGACGTTCGTCCTGATCATCGGCGGGATCGACCTGTCGGTAGGCTCGGTG
CTGGCACTCGCGGCATCTACTGTCAGCGTGGCGATTCTTGGCTGGGGTTGGAGCGTATTGCCGGCGGCCTTGCTGGGTAT
GGCAGTCGCGGCGTTGGCCGGCACGGTTACCGGCTCGATTACCGTGGCGTGGCGAATTCCGTCGTTCATCGTATCTCTGG
GTGTTCTGGAGATGGCCCGTGGTCTGGCCTATCAGATGACCGGTTCGCGCACGGCCTACATCGGTGATTCCTTCGCCTGG
CTGTCGAACCCGATCGCCTTCGGCATTTCGCCGTCGTTCATCATTGCCTTGCTGGTCATCTTTATTGCCCAGGTCGTTCT
GACCCGTACCGTGTTCGGTCGCTACCTGATCGGCATTGGCACCAACGAAGAAGCGGTGCGTCTGGCGGGGATCAATCCAA
AACCCTACAAGATCCTGGTGTTCAGTCTGATGGGCTTGCTCGCGGGCATTGCGGCGCTGTTCCAGATTTCCCGGCTGGAA
GCGGCCGACCCGAATGCTGGTTCAGGCCTTGAGCTGCAAGTCATCGCTGCGGTGGTGATCGGCGGTACCAGCCTGATGGG
CGGCCGTGGTTCGGTGATCAGCACCTTTTTCGGTGTGTTGATCATCTCCGTGCTGGCGGCCGGTCTGGCGCAGATTGGCG
CGACCGAGCCGACCAAGCGCATCATCACCGGTGCGGTGATCGTGATCGCCGTGGTGCTCGACACCTATCGCAGTCAACGC
GCAAGCCGACGGGGCTGA

Upstream 100 bases:

>100_bases
AACGCGACAGCTGGACCCAGGATGACTTGCTTGCCGCCGCATTCGCCGGCTACCAGAAACGTGATGCGTTGCTCAACGAA
GCAGCGCCTAGGGATCTCCC

Downstream 100 bases:

>100_bases
TAAATGGCAACGATCAAGGATGTGGCGGCACTTGCAGGAATTTCCTACACGACTGTGTCCCACGTAGTAAACAAGACCCG
ACCGGTGAGCGAAGAAGTGC

Product: inner-membrane translocator

Products: ADP; phosphate; ribose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 325; Mature: 325

Protein sequence:

>325_residues
MKTASSAGKSSGNFYGLGTYLGLAGALLAMIALFSVMSSHFLSYNTFSTLANQIPDLMVLAVGMTFVLIIGGIDLSVGSV
LALAASTVSVAILGWGWSVLPAALLGMAVAALAGTVTGSITVAWRIPSFIVSLGVLEMARGLAYQMTGSRTAYIGDSFAW
LSNPIAFGISPSFIIALLVIFIAQVVLTRTVFGRYLIGIGTNEEAVRLAGINPKPYKILVFSLMGLLAGIAALFQISRLE
AADPNAGSGLELQVIAAVVIGGTSLMGGRGSVISTFFGVLIISVLAAGLAQIGATEPTKRIITGAVIVIAVVLDTYRSQR
ASRRG

Sequences:

>Translated_325_residues
MKTASSAGKSSGNFYGLGTYLGLAGALLAMIALFSVMSSHFLSYNTFSTLANQIPDLMVLAVGMTFVLIIGGIDLSVGSV
LALAASTVSVAILGWGWSVLPAALLGMAVAALAGTVTGSITVAWRIPSFIVSLGVLEMARGLAYQMTGSRTAYIGDSFAW
LSNPIAFGISPSFIIALLVIFIAQVVLTRTVFGRYLIGIGTNEEAVRLAGINPKPYKILVFSLMGLLAGIAALFQISRLE
AADPNAGSGLELQVIAAVVIGGTSLMGGRGSVISTFFGVLIISVLAAGLAQIGATEPTKRIITGAVIVIAVVLDTYRSQR
ASRRG
>Mature_325_residues
MKTASSAGKSSGNFYGLGTYLGLAGALLAMIALFSVMSSHFLSYNTFSTLANQIPDLMVLAVGMTFVLIIGGIDLSVGSV
LALAASTVSVAILGWGWSVLPAALLGMAVAALAGTVTGSITVAWRIPSFIVSLGVLEMARGLAYQMTGSRTAYIGDSFAW
LSNPIAFGISPSFIIALLVIFIAQVVLTRTVFGRYLIGIGTNEEAVRLAGINPKPYKILVFSLMGLLAGIAALFQISRLE
AADPNAGSGLELQVIAAVVIGGTSLMGGRGSVISTFFGVLIISVLAAGLAQIGATEPTKRIITGAVIVIAVVLDTYRSQR
ASRRG

Specific function: Part of the binding-protein-dependent transport system for ribose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1172

COG function: function code G; Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790191, Length=298, Percent_Identity=38.255033557047, Blast_Score=166, Evalue=2e-42,
Organism=Escherichia coli, GI1788896, Length=304, Percent_Identity=34.2105263157895, Blast_Score=135, Evalue=3e-33,
Organism=Escherichia coli, GI145693152, Length=328, Percent_Identity=31.7073170731707, Blast_Score=119, Evalue=4e-28,
Organism=Escherichia coli, GI1790524, Length=294, Percent_Identity=31.2925170068027, Blast_Score=113, Evalue=2e-26,
Organism=Escherichia coli, GI1789992, Length=134, Percent_Identity=44.0298507462687, Blast_Score=100, Evalue=9e-23,
Organism=Escherichia coli, GI87082395, Length=251, Percent_Identity=34.6613545816733, Blast_Score=98, Evalue=8e-22,
Organism=Escherichia coli, GI145693214, Length=241, Percent_Identity=33.6099585062241, Blast_Score=94, Evalue=1e-20,
Organism=Escherichia coli, GI1787793, Length=298, Percent_Identity=29.8657718120805, Blast_Score=78, Evalue=9e-16,
Organism=Escherichia coli, GI1787794, Length=312, Percent_Identity=26.2820512820513, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1788471, Length=326, Percent_Identity=28.8343558282209, Blast_Score=67, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 33497; Mature: 33497

Theoretical pI: Translated: 10.27; Mature: 10.27

Prosite motif: PS00307 LECTIN_LEGUME_BETA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTASSAGKSSGNFYGLGTYLGLAGALLAMIALFSVMSSHFLSYNTFSTLANQIPDLMVL
CCCCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AVGMTFVLIIGGIDLSVGSVLALAASTVSVAILGWGWSVLPAALLGMAVAALAGTVTGSI
HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHEEECCCHHHHHHHHHHHHHHHHHHHHCCCE
TVAWRIPSFIVSLGVLEMARGLAYQMTGSRTAYIGDSFAWLSNPIAFGISPSFIIALLVI
EEEEEHHHHHHHHHHHHHHCCCEEEECCCEEEEECCCHHHHCCCEEECCCHHHHHHHHHH
FIAQVVLTRTVFGRYLIGIGTNEEAVRLAGINPKPYKILVFSLMGLLAGIAALFQISRLE
HHHHHHHHHHHHHHHHEECCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHC
AADPNAGSGLELQVIAAVVIGGTSLMGGRGSVISTFFGVLIISVLAAGLAQIGATEPTKR
CCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
IITGAVIVIAVVLDTYRSQRASRRG
HHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MKTASSAGKSSGNFYGLGTYLGLAGALLAMIALFSVMSSHFLSYNTFSTLANQIPDLMVL
CCCCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AVGMTFVLIIGGIDLSVGSVLALAASTVSVAILGWGWSVLPAALLGMAVAALAGTVTGSI
HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHEEECCCHHHHHHHHHHHHHHHHHHHHCCCE
TVAWRIPSFIVSLGVLEMARGLAYQMTGSRTAYIGDSFAWLSNPIAFGISPSFIIALLVI
EEEEEHHHHHHHHHHHHHHCCCEEEECCCEEEEECCCHHHHCCCEEECCCHHHHHHHHHH
FIAQVVLTRTVFGRYLIGIGTNEEAVRLAGINPKPYKILVFSLMGLLAGIAALFQISRLE
HHHHHHHHHHHHHHHHEECCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHC
AADPNAGSGLELQVIAAVVIGGTSLMGGRGSVISTFFGVLIISVLAAGLAQIGATEPTKR
CCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
IITGAVIVIAVVLDTYRSQRASRRG
HHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; ribose [Periplasm]; H2O [C]

Specific reaction: ATP + ribose [Periplasm] + H2O = ADP + phosphate + ribose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]