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The map label for this gene is rpoE [C]

Identifier: 77458003

GI number: 77458003

Start: 1974118

End: 1974708

Strand: Direct

Name: rpoE [C]

Synonym: Pfl01_1776

Alternate gene names: 77458003

Gene position: 1974118-1974708 (Clockwise)

Preceding gene: 77458002

Following gene: 77458004

Centisome position: 30.66

GC content: 52.45

Gene sequence:

>591_bases
TTGAATAAAGCCCAAACGCTATCCACGCGCTACGACCCCCGCGAGCTCTCTGATGAGGAGTTGGTCGCGCGCTCGCATAC
CGAGCTTTTTCACGTGACGCGTGCGTATGAAGAACTGATGCGGCGTTACCAGCGGACATTATTTAACGTGTGCGCACGAT
ATCTTGGGAACGATCGCGATGCAGACGATGTCTGTCAGGAAGTGATGTTGAAGGTGCTGTACGGGCTGAAGAACTTCGAG
GGGAAATCGAAGTTCAAGACATGGCTGTACAGCATCACCTACAACGAATGCATCACACAGTATCGGAAGGAACGGCGAAA
GCGTCGCTTGATGGACGCACTGAGTCTTGACCCCCTCGAGGAAGCGTCCGAAGAAAAGGCGCCGAAACCCGAGGAGAAGG
GCGGACTGGATCGCTGGCTGGTGTATGTGAACCCGATTGACCGGGAAATTCTGGTGCTACGATTTGTCGCAGAGCTGGAG
TTTCAGGAGATCGCAGACATCATGCACATGGGGTTGAGTGCGACAAAAATGCGTTACAAACGCGCTCTTGATAAATTGCG
TGAGAAATTTGCAGGCATTGCTGAAACTTAG

Upstream 100 bases:

>100_bases
TAGCCGCTAACCCGGCAAACCCTGCTAATGTATGCCGCCGCAAAATGCCAGCTGTCGCTGGCTGCGGTGGACATTGACCT
GACTGTCGGCACGACTTGTT

Downstream 100 bases:

>100_bases
TTCGGCGCAAATATCTCTTACGTGTAGGCAAGTTCTGATAGACTTGCCGCCGAGTTGTCCCCCGGTTTGCGGGACTGCTT
CACAATCACCAGATGGGGAT

Product: RNA polymerase sigma factor SigX

Products: NA

Alternate protein names: RNA Polymerase ECF-Type Sigma Factor; ECF Subfamily RNA Polymerase Sigma-24 Factor; RNA Polymerase Sigma Factor; RNA Polymerase Sigma Factor SigX; DNA-Directed RNA Polymeracialized Sigma Subunit; RNA Polymerase Sigma-70 Factor; RNA Polymerase Sigma-24 Subunit Ecf Subfamily; ECF Subfamily RNA Polymerase Sigma Factor; ECF Subfamily RNA Polymerase Sigma-24 Subunit; Sigma-; RNA Polymerase Sigma-70 Factor ECF Subfamily; Sigma Subunit; RNA Polymerase Ecf-Type Sigma Factor; RNA Polymerase Sigma-E Factor; RNA Polymerase Sigma Factor SigW; RNA Polymerase Sigma Factor Sigma-70 Family; Sigma Factor; Sigma-70 Family RNA Polymerase Sigma Factor; Fis Family Transcriptional Regulator

Number of amino acids: Translated: 196; Mature: 196

Protein sequence:

>196_residues
MNKAQTLSTRYDPRELSDEELVARSHTELFHVTRAYEELMRRYQRTLFNVCARYLGNDRDADDVCQEVMLKVLYGLKNFE
GKSKFKTWLYSITYNECITQYRKERRKRRLMDALSLDPLEEASEEKAPKPEEKGGLDRWLVYVNPIDREILVLRFVAELE
FQEIADIMHMGLSATKMRYKRALDKLREKFAGIAET

Sequences:

>Translated_196_residues
MNKAQTLSTRYDPRELSDEELVARSHTELFHVTRAYEELMRRYQRTLFNVCARYLGNDRDADDVCQEVMLKVLYGLKNFE
GKSKFKTWLYSITYNECITQYRKERRKRRLMDALSLDPLEEASEEKAPKPEEKGGLDRWLVYVNPIDREILVLRFVAELE
FQEIADIMHMGLSATKMRYKRALDKLREKFAGIAET
>Mature_196_residues
MNKAQTLSTRYDPRELSDEELVARSHTELFHVTRAYEELMRRYQRTLFNVCARYLGNDRDADDVCQEVMLKVLYGLKNFE
GKSKFKTWLYSITYNECITQYRKERRKRRLMDALSLDPLEEASEEKAPKPEEKGGLDRWLVYVNPIDREILVLRFVAELE
FQEIADIMHMGLSATKMRYKRALDKLREKFAGIAET

Specific function: Sigma Factors Are Initiation Factors That Promote The Attachment Of RNA Polymerase To Specific Initiation Sites And Are Then Released. This Sigma Factor Is Involved In Heat Shock And Oxidative Stress Response; It Is Believed To Control Protein Processing

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 23259; Mature: 23259

Theoretical pI: Translated: 8.04; Mature: 8.04

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKAQTLSTRYDPRELSDEELVARSHTELFHVTRAYEELMRRYQRTLFNVCARYLGNDRD
CCCCHHHHCCCCCHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
ADDVCQEVMLKVLYGLKNFEGKSKFKTWLYSITYNECITQYRKERRKRRLMDALSLDPLE
HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH
EASEEKAPKPEEKGGLDRWLVYVNPIDREILVLRFVAELEFQEIADIMHMGLSATKMRYK
HHHHHCCCCCCCCCCCHHEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
RALDKLREKFAGIAET
HHHHHHHHHHCCCCCC
>Mature Secondary Structure
MNKAQTLSTRYDPRELSDEELVARSHTELFHVTRAYEELMRRYQRTLFNVCARYLGNDRD
CCCCHHHHCCCCCHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
ADDVCQEVMLKVLYGLKNFEGKSKFKTWLYSITYNECITQYRKERRKRRLMDALSLDPLE
HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH
EASEEKAPKPEEKGGLDRWLVYVNPIDREILVLRFVAELEFQEIADIMHMGLSATKMRYK
HHHHHCCCCCCCCCCCHHEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
RALDKLREKFAGIAET
HHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA