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The map label for this gene is yfgF [C]

Identifier: 77457905

GI number: 77457905

Start: 1872693

End: 1874483

Strand: Reverse

Name: yfgF [C]

Synonym: Pfl01_1678

Alternate gene names: 77457905

Gene position: 1874483-1872693 (Counterclockwise)

Preceding gene: 77457906

Following gene: 77457897

Centisome position: 29.11

GC content: 58.96

Gene sequence:

>1791_bases
ATGACCACGACCGAACAGCTGAGTGCCTTGAGCTCGATCCTGACTCAAAGCGGATTACACAGCCTGTTCCAGCCGATCAT
TTGCCTCTCCGAACGGCGCATCCTCGGCTACGAAGCCCTGACCCGCGGCCCGTCCAACAGCCCGCTGCACTCCCCCATCG
CCCTGTTCGCCGTGGCCCGTCAGGCCGGACGCTTGAGCGAACTGGAAATCGCCTGCCGCCAAAGCGCCTGTCGCCGTTTC
AACGAACAGCAGTTGCCGGGCAAGCTGTTTCTCAACGTCTCTCCCGAATCCTTGCTTGAAGCCGCGCACCAGCCGGGGCG
CACGCTGCAGCTGCTTCAGGATTTCGGCATTCCACCGAGTCAGGTGGTGATCGAACTCACCGAGCAGACGCCAATCGATG
ATTTCCAGTTGCTGCAAACCGCACTGCATCACTATCGGGCGATGGGGTTTTCGATCGCCCTCGATGATCTTGGGGCCGGT
TATTCGAGCCTGCGCCTGTGGTCGGAACTGCGGCCGGACTACGTGAAGATTGACCGGCACTTTATCGACGGCATCCATCA
GGATGCGTTGAAACGAGAGTTCGTTGGATCGATCCTGCAAATCGCCAAGGCCTCGCGAGCTCAAGTGATTGCCGAAGGCA
TCGAGTTGCCGGAAGAGCTGGCAGTGCTGACCGAGATGGGTGTGGATCTGGTGCAGGGCTATCTGCTCGGCCGCCCTCAG
GAACACCCGCCGCGCGATGCTCGCGCCTTGATGCCCAAGCACGACAGCAGCGCCGTGGCGCTGAACGATGAAGGCAGCGA
CCTCAGTGCCCTGCTCAACGATCAACCGGCCGTGAATCGCGACACGCCGACCGCCACCGTACTGGAAGCCTTCCGCCGTC
AGGCCAACCTCAACTCGCTGGCGGTGCTCGACGAACAGGGTCAGCCGTGCGGCATCGTTCATCGTCACTCGTTATCCGAT
GCGCTGCTCAAACCGTTCGCCACCGACCTGTTCGCCCGCAAACCGATCAGCCGCCTGATGAACGACGACTTCCTCGCCGT
GGAAATGAGCCAGTCGCTGCAACAGGTCAGCCGCCTGATCACCAGCCGCGCCCGGCAACGCATCGAAGAAGACTTCATCA
TCACCCTCAACGGCGGTTACCTGGGCCTGGGCCGGGTGATTGACGTGCTGAAGCTGATTACCGAACTGAAGATCCAGCAG
GCGCGCTATGCCAATCCGCTGACCTTGTTGCCGGGGAATGTGCCGATTCAGCAATGTTTGACGAGGTTGCTGCAACAGGG
GCGCGAGTCGGTTATCTGCTATGTCGACATCGACAGCTTCAAACCCTTTAACGATATCTATGGGTATGGACGTGGGGATG
AAGTGCTGCTGTGTCTGGCGCAATGCCTCAACGAACGCGTCGACCCGTCCCGCGATTTCGTCGGGCATATCGGAGGGGAT
GATTTCCTGTTGGTGCTCGGCCCGGAGGATTGGCGCAAACGGCTGAATCAATTGCTTGAGGATTTCCAGAGTCAATGCCG
ACGCTTCTACCGCCCCGAACATCTTGAAGCTGGGTGTTTTGTTGCGCCGAACCGCCAGGGTATTCGTCAGGAGTTTCCGT
TGTTGTCACTGTCCATTGGCGTGGTGCATCTGCATCCTGAAGCGTGTGCGCAGCTGGATGCGAGTCAGTTGGCGGACATG
GCATCGCAGGCGAAGCATCATGCGAAGAATGTTCCGGGGTATAGCGTGCATTTGATTGATAGCCTTTCCCTGTCTAACCT
CCATCAATTAAAGACAATCGAGCAGTTCTGA

Upstream 100 bases:

>100_bases
CGTCATCAAACAGTCATCATTCTGTCGTGCAATAAAGGACTGGGAGCGGTTCTCTTCATCGAGAACGCTCCCAGTCCTTT
TTTTATCGCCAGAGATTGCC

Downstream 100 bases:

>100_bases
CCTCTTCAAATGCACGAAACGGCTAAACCAATAAAACTCACCATTGATCTTGATCTTCAAGGTTCGCTCGAAGTAAATCT
TCCCTCCACGACTTAGTAAC

Product: diguanylate cyclase/phosphodiesterase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 596; Mature: 595

Protein sequence:

>596_residues
MTTTEQLSALSSILTQSGLHSLFQPIICLSERRILGYEALTRGPSNSPLHSPIALFAVARQAGRLSELEIACRQSACRRF
NEQQLPGKLFLNVSPESLLEAAHQPGRTLQLLQDFGIPPSQVVIELTEQTPIDDFQLLQTALHHYRAMGFSIALDDLGAG
YSSLRLWSELRPDYVKIDRHFIDGIHQDALKREFVGSILQIAKASRAQVIAEGIELPEELAVLTEMGVDLVQGYLLGRPQ
EHPPRDARALMPKHDSSAVALNDEGSDLSALLNDQPAVNRDTPTATVLEAFRRQANLNSLAVLDEQGQPCGIVHRHSLSD
ALLKPFATDLFARKPISRLMNDDFLAVEMSQSLQQVSRLITSRARQRIEEDFIITLNGGYLGLGRVIDVLKLITELKIQQ
ARYANPLTLLPGNVPIQQCLTRLLQQGRESVICYVDIDSFKPFNDIYGYGRGDEVLLCLAQCLNERVDPSRDFVGHIGGD
DFLLVLGPEDWRKRLNQLLEDFQSQCRRFYRPEHLEAGCFVAPNRQGIRQEFPLLSLSIGVVHLHPEACAQLDASQLADM
ASQAKHHAKNVPGYSVHLIDSLSLSNLHQLKTIEQF

Sequences:

>Translated_596_residues
MTTTEQLSALSSILTQSGLHSLFQPIICLSERRILGYEALTRGPSNSPLHSPIALFAVARQAGRLSELEIACRQSACRRF
NEQQLPGKLFLNVSPESLLEAAHQPGRTLQLLQDFGIPPSQVVIELTEQTPIDDFQLLQTALHHYRAMGFSIALDDLGAG
YSSLRLWSELRPDYVKIDRHFIDGIHQDALKREFVGSILQIAKASRAQVIAEGIELPEELAVLTEMGVDLVQGYLLGRPQ
EHPPRDARALMPKHDSSAVALNDEGSDLSALLNDQPAVNRDTPTATVLEAFRRQANLNSLAVLDEQGQPCGIVHRHSLSD
ALLKPFATDLFARKPISRLMNDDFLAVEMSQSLQQVSRLITSRARQRIEEDFIITLNGGYLGLGRVIDVLKLITELKIQQ
ARYANPLTLLPGNVPIQQCLTRLLQQGRESVICYVDIDSFKPFNDIYGYGRGDEVLLCLAQCLNERVDPSRDFVGHIGGD
DFLLVLGPEDWRKRLNQLLEDFQSQCRRFYRPEHLEAGCFVAPNRQGIRQEFPLLSLSIGVVHLHPEACAQLDASQLADM
ASQAKHHAKNVPGYSVHLIDSLSLSNLHQLKTIEQF
>Mature_595_residues
TTTEQLSALSSILTQSGLHSLFQPIICLSERRILGYEALTRGPSNSPLHSPIALFAVARQAGRLSELEIACRQSACRRFN
EQQLPGKLFLNVSPESLLEAAHQPGRTLQLLQDFGIPPSQVVIELTEQTPIDDFQLLQTALHHYRAMGFSIALDDLGAGY
SSLRLWSELRPDYVKIDRHFIDGIHQDALKREFVGSILQIAKASRAQVIAEGIELPEELAVLTEMGVDLVQGYLLGRPQE
HPPRDARALMPKHDSSAVALNDEGSDLSALLNDQPAVNRDTPTATVLEAFRRQANLNSLAVLDEQGQPCGIVHRHSLSDA
LLKPFATDLFARKPISRLMNDDFLAVEMSQSLQQVSRLITSRARQRIEEDFIITLNGGYLGLGRVIDVLKLITELKIQQA
RYANPLTLLPGNVPIQQCLTRLLQQGRESVICYVDIDSFKPFNDIYGYGRGDEVLLCLAQCLNERVDPSRDFVGHIGGDD
FLLVLGPEDWRKRLNQLLEDFQSQCRRFYRPEHLEAGCFVAPNRQGIRQEFPLLSLSIGVVHLHPEACAQLDASQLADMA
SQAKHHAKNVPGYSVHLIDSLSLSNLHQLKTIEQF

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PAS (PER-ARNT-SIM) domain [H]

Homologues:

Organism=Escherichia coli, GI1788849, Length=198, Percent_Identity=31.8181818181818, Blast_Score=103, Evalue=3e-23,
Organism=Escherichia coli, GI1787410, Length=222, Percent_Identity=27.4774774774775, Blast_Score=100, Evalue=3e-22,
Organism=Escherichia coli, GI87082096, Length=150, Percent_Identity=34.6666666666667, Blast_Score=97, Evalue=4e-21,
Organism=Escherichia coli, GI1787055, Length=242, Percent_Identity=30.1652892561983, Blast_Score=96, Evalue=6e-21,
Organism=Escherichia coli, GI87081743, Length=225, Percent_Identity=29.7777777777778, Blast_Score=91, Evalue=2e-19,
Organism=Escherichia coli, GI1787541, Length=227, Percent_Identity=31.2775330396476, Blast_Score=88, Evalue=1e-18,
Organism=Escherichia coli, GI87081845, Length=229, Percent_Identity=27.0742358078603, Blast_Score=86, Evalue=6e-18,
Organism=Escherichia coli, GI1788502, Length=232, Percent_Identity=29.3103448275862, Blast_Score=86, Evalue=8e-18,
Organism=Escherichia coli, GI87081921, Length=241, Percent_Identity=26.5560165975104, Blast_Score=84, Evalue=2e-17,
Organism=Escherichia coli, GI226510982, Length=175, Percent_Identity=32.5714285714286, Blast_Score=84, Evalue=2e-17,
Organism=Escherichia coli, GI1790496, Length=227, Percent_Identity=25.1101321585903, Blast_Score=80, Evalue=4e-16,
Organism=Escherichia coli, GI1786507, Length=243, Percent_Identity=26.7489711934156, Blast_Score=79, Evalue=1e-15,
Organism=Escherichia coli, GI87081980, Length=130, Percent_Identity=33.0769230769231, Blast_Score=71, Evalue=3e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR003018
- InterPro:   IPR001610
- InterPro:   IPR000014
- InterPro:   IPR000700
- InterPro:   IPR013767 [H]

Pfam domain/function: PF00563 EAL; PF01590 GAF; PF00990 GGDEF; PF00989 PAS [H]

EC number: NA

Molecular weight: Translated: 66449; Mature: 66318

Theoretical pI: Translated: 6.01; Mature: 6.01

Prosite motif: PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTTEQLSALSSILTQSGLHSLFQPIICLSERRILGYEALTRGPSNSPLHSPIALFAVAR
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCHHHHHCCCCCCCCCHHHHHHHHHH
QAGRLSELEIACRQSACRRFNEQQLPGKLFLNVSPESLLEAAHQPGRTLQLLQDFGIPPS
HHCCHHHHHHHHHHHHHHHCCHHCCCCEEEEECCHHHHHHHHCCCCHHHHHHHHCCCCHH
QVVIELTEQTPIDDFQLLQTALHHYRAMGFSIALDDLGAGYSSLRLWSELRPDYVKIDRH
HHEEEECCCCCCHHHHHHHHHHHHHHHHHHHEEHHHHCCCHHHHHHHHHCCCCHHHHHHH
FIDGIHQDALKREFVGSILQIAKASRAQVIAEGIELPEELAVLTEMGVDLVQGYLLGRPQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCC
EHPPRDARALMPKHDSSAVALNDEGSDLSALLNDQPAVNRDTPTATVLEAFRRQANLNSL
CCCCCHHHHCCCCCCCCEEEECCCCCHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCE
AVLDEQGQPCGIVHRHSLSDALLKPFATDLFARKPISRLMNDDFLAVEMSQSLQQVSRLI
EEECCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHH
TSRARQRIEEDFIITLNGGYLGLGRVIDVLKLITELKIQQARYANPLTLLPGNVPIQQCL
HHHHHHHHCCCEEEEECCCEECHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCHHHHH
TRLLQQGRESVICYVDIDSFKPFNDIYGYGRGDEVLLCLAQCLNERVDPSRDFVGHIGGD
HHHHHCCCCCEEEEEECCCCCCHHHHCCCCCCHHHHHHHHHHHHHCCCCCHHHHHCCCCC
DFLLVLGPEDWRKRLNQLLEDFQSQCRRFYRPEHLEAGCFVAPNRQGIRQEFPLLSLSIG
CEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEECCCCCCHHHHCCEEEEEEE
VVHLHPEACAQLDASQLADMASQAKHHAKNVPGYSVHLIDSLSLSNLHQLKTIEQF
EEEECHHHHHHCCHHHHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHCC
>Mature Secondary Structure 
TTTEQLSALSSILTQSGLHSLFQPIICLSERRILGYEALTRGPSNSPLHSPIALFAVAR
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCHHHHHCCCCCCCCCHHHHHHHHHH
QAGRLSELEIACRQSACRRFNEQQLPGKLFLNVSPESLLEAAHQPGRTLQLLQDFGIPPS
HHCCHHHHHHHHHHHHHHHCCHHCCCCEEEEECCHHHHHHHHCCCCHHHHHHHHCCCCHH
QVVIELTEQTPIDDFQLLQTALHHYRAMGFSIALDDLGAGYSSLRLWSELRPDYVKIDRH
HHEEEECCCCCCHHHHHHHHHHHHHHHHHHHEEHHHHCCCHHHHHHHHHCCCCHHHHHHH
FIDGIHQDALKREFVGSILQIAKASRAQVIAEGIELPEELAVLTEMGVDLVQGYLLGRPQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCC
EHPPRDARALMPKHDSSAVALNDEGSDLSALLNDQPAVNRDTPTATVLEAFRRQANLNSL
CCCCCHHHHCCCCCCCCEEEECCCCCHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCE
AVLDEQGQPCGIVHRHSLSDALLKPFATDLFARKPISRLMNDDFLAVEMSQSLQQVSRLI
EEECCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHH
TSRARQRIEEDFIITLNGGYLGLGRVIDVLKLITELKIQQARYANPLTLLPGNVPIQQCL
HHHHHHHHCCCEEEEECCCEECHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCHHHHH
TRLLQQGRESVICYVDIDSFKPFNDIYGYGRGDEVLLCLAQCLNERVDPSRDFVGHIGGD
HHHHHCCCCCEEEEEECCCCCCHHHHCCCCCCHHHHHHHHHHHHHCCCCCHHHHHCCCCC
DFLLVLGPEDWRKRLNQLLEDFQSQCRRFYRPEHLEAGCFVAPNRQGIRQEFPLLSLSIG
CEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEECCCCCCHHHHCCEEEEEEE
VVHLHPEACAQLDASQLADMASQAKHHAKNVPGYSVHLIDSLSLSNLHQLKTIEQF
EEEECHHHHHHCCHHHHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 1661370 [H]