| Definition | Pseudomonas fluorescens Pf0-1 chromosome, complete genome. |
|---|---|
| Accession | NC_007492 |
| Length | 6,438,405 |
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The map label for this gene is ycbL [C]
Identifier: 77457680
GI number: 77457680
Start: 1624230
End: 1624955
Strand: Reverse
Name: ycbL [C]
Synonym: Pfl01_1453
Alternate gene names: 77457680
Gene position: 1624955-1624230 (Counterclockwise)
Preceding gene: 77457681
Following gene: 77457679
Centisome position: 25.24
GC content: 61.16
Gene sequence:
>726_bases ATGAAGATTGTTTCTCGCGATCAGTGGTTCGAAGTGCAAACCCTGAGCAACGGCATTCGGCTGATTCACGAGCCGTTCAT CCGCCCGTTCTACCGCTGCAACCTGTGGCACGTTCAGGGGCGGGACAAGGATTTGCTGCTCGACAGCGGTTCCGGACTGG TCAGCCTGCGCGAGCAACTGCCGTGGCTGACCGAACGGCCGCTGGTGGCAGTAGCCAGTCATTGCCATTTCGATCACATT GCCGGACATCACGAATTTGCCGAACGGCTGGTACATCCGGCCGAGGCGGACATTCTGGCGGCGCCGGATGGTGAGAATGA TCTGAGCCGGGCCTTCGTCGGCGACGACATGTTCGAAGCGCACCCGGATTGCCCGTTGTGCTACGCCGAATACCGGGTCA AGGCGGCGCCGGCCACCGGGTTTGTCGAGGATGGCGATGTGCTGGACCTGGGCAACCGCACGTTGCAGGTGCTGCACACG CCGGGGCATTCACCGGGCGGGATCAGCCTTTACGAAGCGGCCACAGAGACACTGTTCAGTGGTGACATCATCTACGACGG GCCGTTGATCGAAGACGCCTACCACTCGAATCTTGAAGATTACGCCGCCAGCCTGCGTCGCTTGCAGGCTCTGAAGATTC GCACGGTGCATGGCGGGCACTTCGGCAGTTTTTCCGGAGAGCATCTGCGCGGGATGATTGACGAATGGCTGCGCCGGCAC GCCTGA
Upstream 100 bases:
>100_bases GGCCAGCGCGATCTAAGCTGAACAAAACGACTTGATGCTTTCTTCGGCGGGTGTGGCGTCGGTTGCCACACCCGTTTTTT TCGTCTGGAGAAAATGCTTG
Downstream 100 bases:
>100_bases GGCCTGCTGTACTTCAGTCAGACTAACGACACAAAGATCTGCCATGAGAAGAGCTGCCGTACGTGCTGCCGTGCACCGGT TCATCCTGCGCCTGCTGGAA
Product: beta-lactamase-like protein
Products: NA
Alternate protein names: Beta-Lactamase Domain Protein; Zinc-Dependent Hydrolase; Beta-Lactamase-Like Protein; Beta-Lactamase; Metallo-Beta-Lactamase Superfamily; Beta-Lactamase-Like; Metallo-Beta-Lactamase Domain Protein
Number of amino acids: Translated: 241; Mature: 241
Protein sequence:
>241_residues MKIVSRDQWFEVQTLSNGIRLIHEPFIRPFYRCNLWHVQGRDKDLLLDSGSGLVSLREQLPWLTERPLVAVASHCHFDHI AGHHEFAERLVHPAEADILAAPDGENDLSRAFVGDDMFEAHPDCPLCYAEYRVKAAPATGFVEDGDVLDLGNRTLQVLHT PGHSPGGISLYEAATETLFSGDIIYDGPLIEDAYHSNLEDYAASLRRLQALKIRTVHGGHFGSFSGEHLRGMIDEWLRRH A
Sequences:
>Translated_241_residues MKIVSRDQWFEVQTLSNGIRLIHEPFIRPFYRCNLWHVQGRDKDLLLDSGSGLVSLREQLPWLTERPLVAVASHCHFDHI AGHHEFAERLVHPAEADILAAPDGENDLSRAFVGDDMFEAHPDCPLCYAEYRVKAAPATGFVEDGDVLDLGNRTLQVLHT PGHSPGGISLYEAATETLFSGDIIYDGPLIEDAYHSNLEDYAASLRRLQALKIRTVHGGHFGSFSGEHLRGMIDEWLRRH A >Mature_241_residues MKIVSRDQWFEVQTLSNGIRLIHEPFIRPFYRCNLWHVQGRDKDLLLDSGSGLVSLREQLPWLTERPLVAVASHCHFDHI AGHHEFAERLVHPAEADILAAPDGENDLSRAFVGDDMFEAHPDCPLCYAEYRVKAAPATGFVEDGDVLDLGNRTLQVLHT PGHSPGGISLYEAATETLFSGDIIYDGPLIEDAYHSNLEDYAASLRRLQALKIRTVHGGHFGSFSGEHLRGMIDEWLRRH A
Specific function: Unknown
COG id: COG0491
COG function: function code R; Zn-dependent hydrolases, including glyoxylases
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Homo sapiens, GI42822880, Length=248, Percent_Identity=35.8870967741936, Blast_Score=150, Evalue=1e-36,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 27056; Mature: 27056
Theoretical pI: Translated: 5.62; Mature: 5.62
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKIVSRDQWFEVQTLSNGIRLIHEPFIRPFYRCNLWHVQGRDKDLLLDSGSGLVSLREQL CCCCCCCCCEEHHHHHHHHHHHHHHHHCHHHHCEEEEECCCCCEEEEECCCCCHHHHHHC PWLTERPLVAVASHCHFDHIAGHHEFAERLVHPAEADILAAPDGENDLSRAFVGDDMFEA CCCCCCCHHHHHHHCCHHHHCCHHHHHHHHCCCCCCCEEECCCCCCHHHHHHHCCCHHHC HPDCPLCYAEYRVKAAPATGFVEDGDVLDLGNRTLQVLHTPGHSPGGISLYEAATETLFS CCCCCEEHHHEEEEECCCCCCCCCCCEEECCCCEEEEEECCCCCCCCCHHHHHHHHHHHC GDIIYDGPLIEDAYHSNLEDYAASLRRLQALKIRTVHGGHFGSFSGEHLRGMIDEWLRRH CCEEECCCCCCHHHHCCHHHHHHHHHHHHHHEEEEEECCCCCCCCHHHHHHHHHHHHHHC A C >Mature Secondary Structure MKIVSRDQWFEVQTLSNGIRLIHEPFIRPFYRCNLWHVQGRDKDLLLDSGSGLVSLREQL CCCCCCCCCEEHHHHHHHHHHHHHHHHCHHHHCEEEEECCCCCEEEEECCCCCHHHHHHC PWLTERPLVAVASHCHFDHIAGHHEFAERLVHPAEADILAAPDGENDLSRAFVGDDMFEA CCCCCCCHHHHHHHCCHHHHCCHHHHHHHHCCCCCCCEEECCCCCCHHHHHHHCCCHHHC HPDCPLCYAEYRVKAAPATGFVEDGDVLDLGNRTLQVLHTPGHSPGGISLYEAATETLFS CCCCCEEHHHEEEEECCCCCCCCCCCEEECCCCEEEEEECCCCCCCCCHHHHHHHHHHHC GDIIYDGPLIEDAYHSNLEDYAASLRRLQALKIRTVHGGHFGSFSGEHLRGMIDEWLRRH CCEEECCCCCCHHHHCCHHHHHHHHHHHHHHEEEEEECCCCCCCCHHHHHHHHHHHHHHC A C
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA