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The map label for this gene is yhjC [C]

Identifier: 77457661

GI number: 77457661

Start: 1608832

End: 1609737

Strand: Reverse

Name: yhjC [C]

Synonym: Pfl01_1434

Alternate gene names: 77457661

Gene position: 1609737-1608832 (Counterclockwise)

Preceding gene: 77457663

Following gene: 77457657

Centisome position: 25.0

GC content: 65.78

Gene sequence:

>906_bases
ATGGATCGCATCGAATGCATGCGCGCCTTCGTGGTGACGGTCGGCGAGAACGGCTTCGCGGCCGCCGCCCGGGCCATGGA
CGTGCCCCGCTCGAAAGTCAGCAAACAGATTCAGGCGCTGGAAGAAGCCATCGGTGTGCAACTGCTGCAACGCACCACCC
GCAGCCTGCACCTGACCGAAGCAGGTGCCGAGTATTTCGAAGCGGCGCGGGAAGTGATTGCGGCACTGGACGAGGCCGAG
CAGCGGGCGCGGGACGGGGTGGGTGAATTGCGTGGTGTGTTGCGGGTCAACGCACCGATGTCGTTCGGCTTGCGGCGGCT
GGGCAAGCTGATTCCGCTGTTTCACGAGCAGCACCCGAACATCGAACTGCAACTGGTGCTCAGCGACCAGCAGGTCGATC
CGGTGCGCGGCGGGTTCGACGTGACCATCCGCATCGCCAGCCTGCCCGACTCGACCATGATCGCCCGGCAACTGGCGCCG
GCCCCACGGATCATGGTCGCCTCCCCCGCTTACCTCGAACGCGCGGGCACGCCGCAGACCCCGCAGGATCTGCGCTCGCA
TCAATGCTTGAACTACGGCTATCTGCAGAGTGGCGTCAGCCTGCAACTGTGCAACGGCAAAGAAACGCAGCGGGTCAACG
TGACCGGGCCGCTGCACGCCAACAACGGCGACCTGCTGGCGCAAGCGGCCGAGGCCGGCATGGGCATTGCGCTGCTGCCG
GACTTCATCGTCGAAGAGGCGTTGGCGGCCGGGCGACTGGTGCCGGTGCTGTGCGAATGGCAGGCGCCGGCGATCACCAT
CAACGCGGTGTACTCGTCAGCGCGACGAGTGCCGCAGAAGACTCGGGCGTTTATCGCGTTTCTGGTGGAGCAATTGGCGC
CGACTGGCGAATCCCCAACCGGCTGA

Upstream 100 bases:

>100_bases
GCGGCGTTGTTGTCTCGGCTTGGATGTCACTTTAGGGGCTGGCCGATAAAGGGACAATTCCCTAAAATCGAGAATCATTG
ATTCTAAAATAGGGACAATC

Downstream 100 bases:

>100_bases
TCCACACCGCCGCCAGAATCACGCTGCCACCGAGGAACAACCGCCCGAGCTCCTCGTGCTGATTCCAGATCAGCAGATTC
AGCAGCAGCCCCACCGGCAC

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: ORF2 [H]

Number of amino acids: Translated: 301; Mature: 301

Protein sequence:

>301_residues
MDRIECMRAFVVTVGENGFAAAARAMDVPRSKVSKQIQALEEAIGVQLLQRTTRSLHLTEAGAEYFEAAREVIAALDEAE
QRARDGVGELRGVLRVNAPMSFGLRRLGKLIPLFHEQHPNIELQLVLSDQQVDPVRGGFDVTIRIASLPDSTMIARQLAP
APRIMVASPAYLERAGTPQTPQDLRSHQCLNYGYLQSGVSLQLCNGKETQRVNVTGPLHANNGDLLAQAAEAGMGIALLP
DFIVEEALAAGRLVPVLCEWQAPAITINAVYSSARRVPQKTRAFIAFLVEQLAPTGESPTG

Sequences:

>Translated_301_residues
MDRIECMRAFVVTVGENGFAAAARAMDVPRSKVSKQIQALEEAIGVQLLQRTTRSLHLTEAGAEYFEAAREVIAALDEAE
QRARDGVGELRGVLRVNAPMSFGLRRLGKLIPLFHEQHPNIELQLVLSDQQVDPVRGGFDVTIRIASLPDSTMIARQLAP
APRIMVASPAYLERAGTPQTPQDLRSHQCLNYGYLQSGVSLQLCNGKETQRVNVTGPLHANNGDLLAQAAEAGMGIALLP
DFIVEEALAAGRLVPVLCEWQAPAITINAVYSSARRVPQKTRAFIAFLVEQLAPTGESPTG
>Mature_301_residues
MDRIECMRAFVVTVGENGFAAAARAMDVPRSKVSKQIQALEEAIGVQLLQRTTRSLHLTEAGAEYFEAAREVIAALDEAE
QRARDGVGELRGVLRVNAPMSFGLRRLGKLIPLFHEQHPNIELQLVLSDQQVDPVRGGFDVTIRIASLPDSTMIARQLAP
APRIMVASPAYLERAGTPQTPQDLRSHQCLNYGYLQSGVSLQLCNGKETQRVNVTGPLHANNGDLLAQAAEAGMGIALLP
DFIVEEALAAGRLVPVLCEWQAPAITINAVYSSARRVPQKTRAFIAFLVEQLAPTGESPTG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693193, Length=296, Percent_Identity=36.4864864864865, Blast_Score=173, Evalue=1e-44,
Organism=Escherichia coli, GI1786401, Length=290, Percent_Identity=35.5172413793103, Blast_Score=161, Evalue=5e-41,
Organism=Escherichia coli, GI87081978, Length=288, Percent_Identity=33.3333333333333, Blast_Score=140, Evalue=9e-35,
Organism=Escherichia coli, GI1789440, Length=289, Percent_Identity=32.5259515570934, Blast_Score=134, Evalue=7e-33,
Organism=Escherichia coli, GI1789639, Length=297, Percent_Identity=27.6094276094276, Blast_Score=128, Evalue=5e-31,
Organism=Escherichia coli, GI1787128, Length=285, Percent_Identity=30.5263157894737, Blast_Score=124, Evalue=8e-30,
Organism=Escherichia coli, GI1787589, Length=278, Percent_Identity=30.9352517985612, Blast_Score=111, Evalue=6e-26,
Organism=Escherichia coli, GI1789173, Length=271, Percent_Identity=28.7822878228782, Blast_Score=92, Evalue=5e-20,
Organism=Escherichia coli, GI1788706, Length=301, Percent_Identity=27.5747508305648, Blast_Score=76, Evalue=3e-15,
Organism=Escherichia coli, GI1787879, Length=156, Percent_Identity=32.6923076923077, Blast_Score=75, Evalue=7e-15,
Organism=Escherichia coli, GI145693105, Length=123, Percent_Identity=30.8943089430894, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1787601, Length=145, Percent_Identity=28.2758620689655, Blast_Score=69, Evalue=5e-13,
Organism=Escherichia coli, GI157672245, Length=141, Percent_Identity=31.9148936170213, Blast_Score=66, Evalue=3e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 32610; Mature: 32610

Theoretical pI: Translated: 6.37; Mature: 6.37

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDRIECMRAFVVTVGENGFAAAARAMDVPRSKVSKQIQALEEAIGVQLLQRTTRSLHLTE
CCHHHHHHHHHHEECCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHEEHHH
AGAEYFEAAREVIAALDEAEQRARDGVGELRGVLRVNAPMSFGLRRLGKLIPLFHEQHPN
HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHEECCCHHHHHHHHHHHHHHHHCCCCC
IELQLVLSDQQVDPVRGGFDVTIRIASLPDSTMIARQLAPAPRIMVASPAYLERAGTPQT
EEEEEEEECCCCCCCCCCEEEEEEEECCCCHHHHHHHHCCCCCEEEECCHHHHHCCCCCC
PQDLRSHQCLNYGYLQSGVSLQLCNGKETQRVNVTGPLHANNGDLLAQAAEAGMGIALLP
HHHHHHHHCCCCHHHHCCCEEEEECCCCCEEEEEECCEECCCCHHHHHHHHCCCCEEHHH
DFIVEEALAAGRLVPVLCEWQAPAITINAVYSSARRVPQKTRAFIAFLVEQLAPTGESPT
HHHHHHHHHCCCEEEEEECCCCCEEEHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCCCCC
G
C
>Mature Secondary Structure
MDRIECMRAFVVTVGENGFAAAARAMDVPRSKVSKQIQALEEAIGVQLLQRTTRSLHLTE
CCHHHHHHHHHHEECCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHEEHHH
AGAEYFEAAREVIAALDEAEQRARDGVGELRGVLRVNAPMSFGLRRLGKLIPLFHEQHPN
HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHEECCCHHHHHHHHHHHHHHHHCCCCC
IELQLVLSDQQVDPVRGGFDVTIRIASLPDSTMIARQLAPAPRIMVASPAYLERAGTPQT
EEEEEEEECCCCCCCCCCEEEEEEEECCCCHHHHHHHHCCCCCEEEECCHHHHHCCCCCC
PQDLRSHQCLNYGYLQSGVSLQLCNGKETQRVNVTGPLHANNGDLLAQAAEAGMGIALLP
HHHHHHHHCCCCHHHHCCCEEEEECCCCCEEEEEECCEECCCCHHHHHHHHCCCCEEHHH
DFIVEEALAAGRLVPVLCEWQAPAITINAVYSSARRVPQKTRAFIAFLVEQLAPTGESPT
HHHHHHHHHCCCEEEEEECCCCCEEEHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCCCCC
G
C

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8635745; 7542800 [H]