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The map label for this gene is ydhB [H]

Identifier: 77457657

GI number: 77457657

Start: 1605746

End: 1606669

Strand: Reverse

Name: ydhB [H]

Synonym: Pfl01_1430

Alternate gene names: 77457657

Gene position: 1606669-1605746 (Counterclockwise)

Preceding gene: 77457661

Following gene: 77457656

Centisome position: 24.95

GC content: 65.26

Gene sequence:

>924_bases
ATGAAAGCGCCCCGCGTGACCCTTGATCAATGGCGAACGTTGCAGGCCGTGGTCGACCACGGCGGATTCGCCCAGGCCGC
CGAGGCCCTGCACCGTTCGCAATCGTCGGTGAGCTACACCGTCGCCCGCATGCAGGATCAGCTCGGCGTGCCGCTGTTGC
GCATCGACGGTCGCAAGGCTGTGCTGACCGAAGCCGGCGGCGTGTTGCTGCGCCGCTCGCGGCAATTGGTGAAACAGGCC
AGCCAGCTGGAAGACCTTGCCCATCACATGGAGCAGGGCTGGGAAGCCGAAGTACGGCTGGTGGTCGACGCCGCCTACCC
GAGCGCCCGTATCGTGCGCGCATTGACCGCTTTCATGCCGCAGAGTCGCGGCTGCCGGGTGCGGCTGCGTGAGGAAGTGT
TGTCGGGCGTCGAAGAAGTGCTGCTCGAAGGCGTGGCCGACCTGGCCATCACCGGCCTGAGCATTCCCGGTTACCTTGGC
GCGGAATTGAGCGATGTCGAATTTGTCGCCGTCGCCCATCCTGACCATGCGCTGCACCGGCTCAACCGCGAGCTGAGCTT
TCAGGACCTGGAAACCCAGATGCAAGTGGTGATCCGCGACTCCGGCCGCCAGCAACCCCGGGACGTCGGCTGGCTCGGCG
CCGAGCAGCGCTGGACCGTAGGCAGCCTCGCCACGGCCGCGACGTTCGTCAGCAGCGGCCTGGGATTCGCCTGGCTGCCA
CGCCACATGATCGAGCGGGAACTGAAAGACGGCTCGCTCAAGCTGCTACCGTTGGACAGAGGCGGCAACCGCAACTCCAG
TTTCTATCTGTATTCGAACAAGGACAAACCCTTGGGCCCAGCGACGCAAATCCTGATCGAACTGCTGCGCACCTTCGACA
CCCTGCCGCTGGACGCACCGTTCGCCGCCCCCGAACAAGCCTGA

Upstream 100 bases:

>100_bases
GAACGCAGTCAGCGGAAGCAGCGCCAGCAACACACAACAGAATTTTTTCATTCGGCAGTCTCCATGAGGGACCGCCAGCT
TAGGACAAGAGGAGCTATTG

Downstream 100 bases:

>100_bases
CACGGAGTTCACCGATGGCGTATTTCGAGCATGAAGGTTGCAACCTGCACTACGAGGAATATGGCCACGGCGTTCCGTTG
CTGCTGGTTCACGGTCTGGG

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 307; Mature: 307

Protein sequence:

>307_residues
MKAPRVTLDQWRTLQAVVDHGGFAQAAEALHRSQSSVSYTVARMQDQLGVPLLRIDGRKAVLTEAGGVLLRRSRQLVKQA
SQLEDLAHHMEQGWEAEVRLVVDAAYPSARIVRALTAFMPQSRGCRVRLREEVLSGVEEVLLEGVADLAITGLSIPGYLG
AELSDVEFVAVAHPDHALHRLNRELSFQDLETQMQVVIRDSGRQQPRDVGWLGAEQRWTVGSLATAATFVSSGLGFAWLP
RHMIERELKDGSLKLLPLDRGGNRNSSFYLYSNKDKPLGPATQILIELLRTFDTLPLDAPFAAPEQA

Sequences:

>Translated_307_residues
MKAPRVTLDQWRTLQAVVDHGGFAQAAEALHRSQSSVSYTVARMQDQLGVPLLRIDGRKAVLTEAGGVLLRRSRQLVKQA
SQLEDLAHHMEQGWEAEVRLVVDAAYPSARIVRALTAFMPQSRGCRVRLREEVLSGVEEVLLEGVADLAITGLSIPGYLG
AELSDVEFVAVAHPDHALHRLNRELSFQDLETQMQVVIRDSGRQQPRDVGWLGAEQRWTVGSLATAATFVSSGLGFAWLP
RHMIERELKDGSLKLLPLDRGGNRNSSFYLYSNKDKPLGPATQILIELLRTFDTLPLDAPFAAPEQA
>Mature_307_residues
MKAPRVTLDQWRTLQAVVDHGGFAQAAEALHRSQSSVSYTVARMQDQLGVPLLRIDGRKAVLTEAGGVLLRRSRQLVKQA
SQLEDLAHHMEQGWEAEVRLVVDAAYPSARIVRALTAFMPQSRGCRVRLREEVLSGVEEVLLEGVADLAITGLSIPGYLG
AELSDVEFVAVAHPDHALHRLNRELSFQDLETQMQVVIRDSGRQQPRDVGWLGAEQRWTVGSLATAATFVSSGLGFAWLP
RHMIERELKDGSLKLLPLDRGGNRNSSFYLYSNKDKPLGPATQILIELLRTFDTLPLDAPFAAPEQA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787949, Length=287, Percent_Identity=27.1777003484321, Blast_Score=103, Evalue=1e-23,
Organism=Escherichia coli, GI87082024, Length=253, Percent_Identity=28.8537549407115, Blast_Score=102, Evalue=3e-23,
Organism=Escherichia coli, GI1789492, Length=256, Percent_Identity=28.515625, Blast_Score=99, Evalue=3e-22,
Organism=Escherichia coli, GI1786508, Length=269, Percent_Identity=26.7657992565056, Blast_Score=86, Evalue=2e-18,
Organism=Escherichia coli, GI1786713, Length=263, Percent_Identity=24.7148288973384, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI87082132, Length=292, Percent_Identity=24.3150684931507, Blast_Score=65, Evalue=8e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33930; Mature: 33930

Theoretical pI: Translated: 6.73; Mature: 6.73

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKAPRVTLDQWRTLQAVVDHGGFAQAAEALHRSQSSVSYTVARMQDQLGVPLLRIDGRKA
CCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCCEE
VLTEAGGVLLRRSRQLVKQASQLEDLAHHMEQGWEAEVRLVVDAAYPSARIVRALTAFMP
EEHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCHHHHHHHHHHHCC
QSRGCRVRLREEVLSGVEEVLLEGVADLAITGLSIPGYLGAELSDVEFVAVAHPDHALHR
CCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCHHHHHH
LNRELSFQDLETQMQVVIRDSGRQQPRDVGWLGAEQRWTVGSLATAATFVSSGLGFAWLP
HHHHCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHH
RHMIERELKDGSLKLLPLDRGGNRNSSFYLYSNKDKPLGPATQILIELLRTFDTLPLDAP
HHHHHHHHCCCCEEEEEECCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCC
FAAPEQA
CCCCCCC
>Mature Secondary Structure
MKAPRVTLDQWRTLQAVVDHGGFAQAAEALHRSQSSVSYTVARMQDQLGVPLLRIDGRKA
CCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCCEE
VLTEAGGVLLRRSRQLVKQASQLEDLAHHMEQGWEAEVRLVVDAAYPSARIVRALTAFMP
EEHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCHHHHHHHHHHHCC
QSRGCRVRLREEVLSGVEEVLLEGVADLAITGLSIPGYLGAELSDVEFVAVAHPDHALHR
CCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCHHHHHH
LNRELSFQDLETQMQVVIRDSGRQQPRDVGWLGAEQRWTVGSLATAATFVSSGLGFAWLP
HHHHCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHH
RHMIERELKDGSLKLLPLDRGGNRNSSFYLYSNKDKPLGPATQILIELLRTFDTLPLDAP
HHHHHHHHCCCCEEEEEECCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCC
FAAPEQA
CCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]