| Definition | Pseudomonas fluorescens Pf0-1 chromosome, complete genome. |
|---|---|
| Accession | NC_007492 |
| Length | 6,438,405 |
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The map label for this gene is ydhP [H]
Identifier: 77457510
GI number: 77457510
Start: 1459558
End: 1460721
Strand: Reverse
Name: ydhP [H]
Synonym: Pfl01_1283
Alternate gene names: 77457510
Gene position: 1460721-1459558 (Counterclockwise)
Preceding gene: 77457511
Following gene: 77457509
Centisome position: 22.69
GC content: 65.72
Gene sequence:
>1164_bases ATGCCCCTCTCGCTTCTCATACTCGCCTTGAGCGCCTTCGCCATCGGCACCACCGAGTTCGTCATCATGGGCCTGCTGCC CAATGTGGCGGCTGACCTCGGTGTGTCGATTCCCGGTGCCGGCTGGCTGGTGACCGGCTACGCCCTGGGCGTGGCGATTG GTGCACCGTTCATGGCAATGGCCACTGCAAAACTGCCGCGCAAGGCTGCACTGGTAACGCTGATGGGCATTTTCATTATC GGCAACCTGCTCTGCGCCATCGCCACTGACTACAACGTGCTGATGTTCGCCCGAGTGGTTACCGCCCTGTGTCACGGCGC GTTCTTCGGCATCGGTTCGGTGGTCGCGGCCAACCTGGTGGCGCCGAACAAACGCGCCTCGGCCGTGGCCCTGATGTTCA CCGGCCTGACCCTGGCCAACGTGCTGGGCGTACCGCTGGGCACCGCGCTCGGTCAGGAAGCCGGCTGGCGCTCGACCTTC TGGGCAGTGACCGTGATCGGTGTGATCGCGCTGATCGGACTGATCCGCTTCCTGCCGGCCAAGCGTGACGAAGAAAAACT CGACATGCGCGCCGAACTGGCCGCGCTCAAGGGCGCCGGGATCTGGCTGTCGCTGAGCATGACCGCGCTGTTCGCCGCCT CGGTGTTCACGTTGTTCACCTACGTCGCACCGCTGCTGGGCGATGTCACCGGTGTTTCGCCCCGTGGCGTGACCTGGACC CTGATGCTCATCGGCCTGGGCCTGACTGTCGGCAACATCATCGGCGGCAAACTGGCCGACAAGGGCCTGGCCGCGACGCT GATCGGCGTGTTCATCGCCATGGCCGTGACCTCCACCGTCCTGACCTGGACCAGCATCGCGCTGATCCCGACCGAGATCA CCCTGTTCCTCTGGGCCACCGCGTGTTTCGCCGCGGTGCCGGCCCTGCAAGTGAACGTCGTGACCTACGGCCAGGCCGCA CCGAACCTGGTGTCGACCCTGAACATCGGCGCCTTCAACGTCGGCAATGCCCTCGGCGCCTGGGTCGGCGGCAGCGTCAT CGCCCACGGCTACGGCCTGACCAGCGTGCCTCTCGCCGCTGCAGCGCTGGCGGTTCTCGCGCTGCTGGTGACCCTGATCA CATTCCGCCAGAACGGCAATCCCGAGCTGGCCACCGCTAACTGA
Upstream 100 bases:
>100_bases GCACTTTTTCAAACGCAACGAGGACGTGATCCAGGCGTTCCTCAGCACCCTCAGCAAAGAGCTCTGACCCTTAACGTCAG CCAGCCAAAAGGATCCAACG
Downstream 100 bases:
>100_bases TTCACTCACTTACCTCACGAGGGTTGTATCTCATGGCAACAATTTTCGATCCGATCAAACTGGGCGACCTCGAGCTGTCC AACCGCATCATCATGGCGCC
Product: general substrate transporter
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 387; Mature: 386
Protein sequence:
>387_residues MPLSLLILALSAFAIGTTEFVIMGLLPNVAADLGVSIPGAGWLVTGYALGVAIGAPFMAMATAKLPRKAALVTLMGIFII GNLLCAIATDYNVLMFARVVTALCHGAFFGIGSVVAANLVAPNKRASAVALMFTGLTLANVLGVPLGTALGQEAGWRSTF WAVTVIGVIALIGLIRFLPAKRDEEKLDMRAELAALKGAGIWLSLSMTALFAASVFTLFTYVAPLLGDVTGVSPRGVTWT LMLIGLGLTVGNIIGGKLADKGLAATLIGVFIAMAVTSTVLTWTSIALIPTEITLFLWATACFAAVPALQVNVVTYGQAA PNLVSTLNIGAFNVGNALGAWVGGSVIAHGYGLTSVPLAAAALAVLALLVTLITFRQNGNPELATAN
Sequences:
>Translated_387_residues MPLSLLILALSAFAIGTTEFVIMGLLPNVAADLGVSIPGAGWLVTGYALGVAIGAPFMAMATAKLPRKAALVTLMGIFII GNLLCAIATDYNVLMFARVVTALCHGAFFGIGSVVAANLVAPNKRASAVALMFTGLTLANVLGVPLGTALGQEAGWRSTF WAVTVIGVIALIGLIRFLPAKRDEEKLDMRAELAALKGAGIWLSLSMTALFAASVFTLFTYVAPLLGDVTGVSPRGVTWT LMLIGLGLTVGNIIGGKLADKGLAATLIGVFIAMAVTSTVLTWTSIALIPTEITLFLWATACFAAVPALQVNVVTYGQAA PNLVSTLNIGAFNVGNALGAWVGGSVIAHGYGLTSVPLAAAALAVLALLVTLITFRQNGNPELATAN >Mature_386_residues PLSLLILALSAFAIGTTEFVIMGLLPNVAADLGVSIPGAGWLVTGYALGVAIGAPFMAMATAKLPRKAALVTLMGIFIIG NLLCAIATDYNVLMFARVVTALCHGAFFGIGSVVAANLVAPNKRASAVALMFTGLTLANVLGVPLGTALGQEAGWRSTFW AVTVIGVIALIGLIRFLPAKRDEEKLDMRAELAALKGAGIWLSLSMTALFAASVFTLFTYVAPLLGDVTGVSPRGVTWTL MLIGLGLTVGNIIGGKLADKGLAATLIGVFIAMAVTSTVLTWTSIALIPTEITLFLWATACFAAVPALQVNVVTYGQAAP NLVSTLNIGAFNVGNALGAWVGGSVIAHGYGLTSVPLAAAALAVLALLVTLITFRQNGNPELATAN
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the major facilitator superfamily [H]
Homologues:
Organism=Escherichia coli, GI1787947, Length=378, Percent_Identity=46.5608465608466, Blast_Score=284, Evalue=8e-78, Organism=Escherichia coli, GI1786595, Length=379, Percent_Identity=33.245382585752, Blast_Score=207, Evalue=9e-55, Organism=Escherichia coli, GI1787808, Length=376, Percent_Identity=29.7872340425532, Blast_Score=122, Evalue=5e-29, Organism=Escherichia coli, GI145693198, Length=356, Percent_Identity=26.685393258427, Blast_Score=102, Evalue=3e-23, Organism=Escherichia coli, GI87081723, Length=229, Percent_Identity=28.3842794759825, Blast_Score=63, Evalue=4e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR020846 - InterPro: IPR011701 - InterPro: IPR016196 [H]
Pfam domain/function: PF07690 MFS_1 [H]
EC number: NA
Molecular weight: Translated: 39623; Mature: 39492
Theoretical pI: Translated: 9.18; Mature: 9.18
Prosite motif: PS50850 MFS
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPLSLLILALSAFAIGTTEFVIMGLLPNVAADLGVSIPGAGWLVTGYALGVAIGAPFMAM CCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCHHHHH ATAKLPRKAALVTLMGIFIIGNLLCAIATDYNVLMFARVVTALCHGAFFGIGSVVAANLV HHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC APNKRASAVALMFTGLTLANVLGVPLGTALGQEAGWRSTFWAVTVIGVIALIGLIRFLPA CCCCCHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCC KRDEEKLDMRAELAALKGAGIWLSLSMTALFAASVFTLFTYVAPLLGDVTGVSPRGVTWT CCCHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHH LMLIGLGLTVGNIIGGKLADKGLAATLIGVFIAMAVTSTVLTWTSIALIPTEITLFLWAT HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ACFAAVPALQVNVVTYGQAAPNLVSTLNIGAFNVGNALGAWVGGSVIAHGYGLTSVPLAA HHHHHCCHHEEEEEEECCCCCHHHHHHCCCCCCCCCHHHHHHCCHHHHCCCCCHHHHHHH AALAVLALLVTLITFRQNGNPELATAN HHHHHHHHHHHHHHHHCCCCCCCEECC >Mature Secondary Structure PLSLLILALSAFAIGTTEFVIMGLLPNVAADLGVSIPGAGWLVTGYALGVAIGAPFMAM CHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCHHHHH ATAKLPRKAALVTLMGIFIIGNLLCAIATDYNVLMFARVVTALCHGAFFGIGSVVAANLV HHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC APNKRASAVALMFTGLTLANVLGVPLGTALGQEAGWRSTFWAVTVIGVIALIGLIRFLPA CCCCCHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCC KRDEEKLDMRAELAALKGAGIWLSLSMTALFAASVFTLFTYVAPLLGDVTGVSPRGVTWT CCCHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHH LMLIGLGLTVGNIIGGKLADKGLAATLIGVFIAMAVTSTVLTWTSIALIPTEITLFLWAT HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ACFAAVPALQVNVVTYGQAAPNLVSTLNIGAFNVGNALGAWVGGSVIAHGYGLTSVPLAA HHHHHCCHHEEEEEEECCCCCHHHHHHCCCCCCCCCHHHHHHCCHHHHCCCCCHHHHHHH AALAVLALLVTLITFRQNGNPELATAN HHHHHHHHHHHHHHHHCCCCCCCEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]