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The map label for this gene is arpC [H]

Identifier: 77457505

GI number: 77457505

Start: 1451545

End: 1453005

Strand: Reverse

Name: arpC [H]

Synonym: Pfl01_1278

Alternate gene names: 77457505

Gene position: 1453005-1451545 (Counterclockwise)

Preceding gene: 77457506

Following gene: 77457504

Centisome position: 22.57

GC content: 64.54

Gene sequence:

>1461_bases
ATGAGCAAGTCGCTACTCTCCATCGCAGTCGCCGCCTTCGTGCTGAGCGGTTGCTCGCTGATACCGGATTATCAGCAGCC
GGAAGCACCGGTGGCCGCGCAGTTCCCGCAGGGCCCGGCGTACTCGCCGGCCCAGGCACCGGCGCAGGCCGCTGCCGAGC
AGGGCTGGAAACAGTTTTTCCATGACCCGGCCCTGCAACAGCTGATCCAGGTCGCCCTGGAAAACAATCGCGACCTGCGT
GTCGCGGCGCTGAACATCGACGCCTATGCGGCTCAATACCGCATCCAGCGCGCCGACCTGTTCCCGGCCGTGTCGGCCAA
TGCCAGCGGCAGCCGTCAGCGGGTTCCGGCCCGTGCGTCGCAGACCGGTGAAGCGGCCATCAGCAGTTCCTACTCCGCTA
CCGTCGGCATCAGCGCCTACGAACTCGACCTGTTCGGTCGGGTTCGCAGCCTGAGCGAACAAGCGCTGCAACAATACTTC
GCCACCGAAGAAGCGCGCCGCAGCACCCAGATCAGCCTGGTGGCCAGCGTGGCCAACGCCTACCTGACCTGGCAGGCCGA
CAAGGAACTGCTCAAGCTGACGCAAGACACCCTCGGTGCCTTCGAGGAAAGCTACAAGCTGACCAGTCGCAGCAACGAAG
TCGGTGTGGCCTCGGCGCTGGACCTGGCGCAGTCGCGTACCTCGGTGGAAAACGCCCGGGCACAACTGGCGCGTTATACC
CGCCAGGTGGCCCAAGACGAAAACAGCCTGACCCTGCTGCTGGGCACCGGCATCCCGGCCAACCTGCAAGCGGCCAAGCC
GCTGTCGGATGACCTGCTGGCCGACGTACCGGCCGGTCTGCCGTCGGATCTGCTGCAACGTCGTCCGGACATCCTGCAGG
CCGAGTACAACCTGAAGGCCGCCAACGCCAACATCGGCGCGGCCCGTGCAGCGTTCTTCCCGAGCATCAGCCTGACCGCC
AACGCGGGCAGCCTGAGCCCGGACCTGTCCGGCCTGTTCAAGGGCGGTTCGGGTACGTGGCTGTTCCAGCCGCAGATCAA
CCTGCCGATCTTCAACGCCGGCAGCCTGCGTGCAAGCCTCGACTACGCCAAGATCCAGAAGGACATTGGCGTGGCGAACT
ACGAGAAGTCCATTCAAACGGCCTTCCAGGAAGTCGCCGACGGCCTCGCCGCCCGCCAGACCTACACCGAGCAGTTGCAG
GCCCAGCGTGATTTCGTTCAGGCCAACCAGGATTACTACCGCCTGGCCGAGCGTCGCTATCGCATTGGCGTCGATAGCAA
CCTGACCTTCCTCGATGCCCAGCGTCAGCTGTTCAGCGCACAACAATCGCTGATCACCGACCGCCTCGCGCAGCTGACCA
GTGCGGTCAACCTGTACAAGGCCCTGGGCGGTGGCTGGAATGCGCAGACCGCGCAGAACGAGCCGCTCAAAGAAGAAGCG
CCGAAGATGAAGCTGTTCTGA

Upstream 100 bases:

>100_bases
TATTCTGGGTTCCACTGTTCTTCGTCACTGTGTCGTCCATGGGTCAGCGCAAAAACGCCGGCAAGGATGACGCCATAGAA
ACTCCTAAAGAGGCTGGCCA

Downstream 100 bases:

>100_bases
TCATCTGCTGAATACAAGAAGCCCACCGTTTGGTGGGCTTTTTGTTGCCTGCGAATCTTGCGTTCGATAATCGCCCGAAT
TCCACTTTCGCCGATTGAAT

Product: RND efflux system outer membrane lipoprotein NodT

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 486; Mature: 485

Protein sequence:

>486_residues
MSKSLLSIAVAAFVLSGCSLIPDYQQPEAPVAAQFPQGPAYSPAQAPAQAAAEQGWKQFFHDPALQQLIQVALENNRDLR
VAALNIDAYAAQYRIQRADLFPAVSANASGSRQRVPARASQTGEAAISSSYSATVGISAYELDLFGRVRSLSEQALQQYF
ATEEARRSTQISLVASVANAYLTWQADKELLKLTQDTLGAFEESYKLTSRSNEVGVASALDLAQSRTSVENARAQLARYT
RQVAQDENSLTLLLGTGIPANLQAAKPLSDDLLADVPAGLPSDLLQRRPDILQAEYNLKAANANIGAARAAFFPSISLTA
NAGSLSPDLSGLFKGGSGTWLFQPQINLPIFNAGSLRASLDYAKIQKDIGVANYEKSIQTAFQEVADGLAARQTYTEQLQ
AQRDFVQANQDYYRLAERRYRIGVDSNLTFLDAQRQLFSAQQSLITDRLAQLTSAVNLYKALGGGWNAQTAQNEPLKEEA
PKMKLF

Sequences:

>Translated_486_residues
MSKSLLSIAVAAFVLSGCSLIPDYQQPEAPVAAQFPQGPAYSPAQAPAQAAAEQGWKQFFHDPALQQLIQVALENNRDLR
VAALNIDAYAAQYRIQRADLFPAVSANASGSRQRVPARASQTGEAAISSSYSATVGISAYELDLFGRVRSLSEQALQQYF
ATEEARRSTQISLVASVANAYLTWQADKELLKLTQDTLGAFEESYKLTSRSNEVGVASALDLAQSRTSVENARAQLARYT
RQVAQDENSLTLLLGTGIPANLQAAKPLSDDLLADVPAGLPSDLLQRRPDILQAEYNLKAANANIGAARAAFFPSISLTA
NAGSLSPDLSGLFKGGSGTWLFQPQINLPIFNAGSLRASLDYAKIQKDIGVANYEKSIQTAFQEVADGLAARQTYTEQLQ
AQRDFVQANQDYYRLAERRYRIGVDSNLTFLDAQRQLFSAQQSLITDRLAQLTSAVNLYKALGGGWNAQTAQNEPLKEEA
PKMKLF
>Mature_485_residues
SKSLLSIAVAAFVLSGCSLIPDYQQPEAPVAAQFPQGPAYSPAQAPAQAAAEQGWKQFFHDPALQQLIQVALENNRDLRV
AALNIDAYAAQYRIQRADLFPAVSANASGSRQRVPARASQTGEAAISSSYSATVGISAYELDLFGRVRSLSEQALQQYFA
TEEARRSTQISLVASVANAYLTWQADKELLKLTQDTLGAFEESYKLTSRSNEVGVASALDLAQSRTSVENARAQLARYTR
QVAQDENSLTLLLGTGIPANLQAAKPLSDDLLADVPAGLPSDLLQRRPDILQAEYNLKAANANIGAARAAFFPSISLTAN
AGSLSPDLSGLFKGGSGTWLFQPQINLPIFNAGSLRASLDYAKIQKDIGVANYEKSIQTAFQEVADGLAARQTYTEQLQA
QRDFVQANQDYYRLAERRYRIGVDSNLTFLDAQRQLFSAQQSLITDRLAQLTSAVNLYKALGGGWNAQTAQNEPLKEEAP
KMKLF

Specific function: The outer membrane component of an antibiotic efflux pump. Confers resistance to numerous structurally unrelated antibiotics such as carbenicillin, chloramphenicol, erythromycin, novobiocin, streptomycin and tetracycline. Is not involved in organic solven

COG id: COG1538

COG function: function code MU; Outer membrane protein

Gene ontology:

Cell location: Cell outer membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the outer membrane factor (OMF) (TC 1.B.17) family [H]

Homologues:

Organism=Escherichia coli, GI1786785, Length=471, Percent_Identity=42.0382165605096, Blast_Score=328, Evalue=6e-91,
Organism=Escherichia coli, GI2367348, Length=482, Percent_Identity=28.0082987551867, Blast_Score=130, Evalue=2e-31,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003423
- InterPro:   IPR010131 [H]

Pfam domain/function: PF02321 OEP [H]

EC number: NA

Molecular weight: Translated: 52698; Mature: 52566

Theoretical pI: Translated: 5.34; Mature: 5.34

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
0.4 %Met     (Translated Protein)
0.6 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
0.2 %Met     (Mature Protein)
0.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKSLLSIAVAAFVLSGCSLIPDYQQPEAPVAAQFPQGPAYSPAQAPAQAAAEQGWKQFF
CCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
HDPALQQLIQVALENNRDLRVAALNIDAYAAQYRIQRADLFPAVSANASGSRQRVPARAS
CCHHHHHHHHHHHCCCCCEEEEEEECHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
QTGEAAISSSYSATVGISAYELDLFGRVRSLSEQALQQYFATEEARRSTQISLVASVANA
CCCHHHHHCCCCEEECCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YLTWQADKELLKLTQDTLGAFEESYKLTSRSNEVGVASALDLAQSRTSVENARAQLARYT
HEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
RQVAQDENSLTLLLGTGIPANLQAAKPLSDDLLADVPAGLPSDLLQRRPDILQAEYNLKA
HHHHCCCCCEEEEEECCCCCCCCCCCCCCHHHHHHCCCCCCHHHHHCCCCCEECCCCEEE
ANANIGAARAAFFPSISLTANAGSLSPDLSGLFKGGSGTWLFQPQINLPIFNAGSLRASL
CCCCCCHHHHHHCCCEEEEECCCCCCCCHHHHEECCCCCEEECCCCCCEEECCCCCHHHH
DYAKIQKDIGVANYEKSIQTAFQEVADGLAARQTYTEQLQAQRDFVQANQDYYRLAERRY
HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
RIGVDSNLTFLDAQRQLFSAQQSLITDRLAQLTSAVNLYKALGGGWNAQTAQNEPLKEEA
EECCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHC
PKMKLF
CCCCCC
>Mature Secondary Structure 
SKSLLSIAVAAFVLSGCSLIPDYQQPEAPVAAQFPQGPAYSPAQAPAQAAAEQGWKQFF
CHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
HDPALQQLIQVALENNRDLRVAALNIDAYAAQYRIQRADLFPAVSANASGSRQRVPARAS
CCHHHHHHHHHHHCCCCCEEEEEEECHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
QTGEAAISSSYSATVGISAYELDLFGRVRSLSEQALQQYFATEEARRSTQISLVASVANA
CCCHHHHHCCCCEEECCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YLTWQADKELLKLTQDTLGAFEESYKLTSRSNEVGVASALDLAQSRTSVENARAQLARYT
HEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
RQVAQDENSLTLLLGTGIPANLQAAKPLSDDLLADVPAGLPSDLLQRRPDILQAEYNLKA
HHHHCCCCCEEEEEECCCCCCCCCCCCCCHHHHHHCCCCCCHHHHHCCCCCEECCCCEEE
ANANIGAARAAFFPSISLTANAGSLSPDLSGLFKGGSGTWLFQPQINLPIFNAGSLRASL
CCCCCCHHHHHHCCCEEEEECCCCCCCCHHHHEECCCCCEEECCCCCCEEECCCCCHHHH
DYAKIQKDIGVANYEKSIQTAFQEVADGLAARQTYTEQLQAQRDFVQANQDYYRLAERRY
HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
RIGVDSNLTFLDAQRQLFSAQQSLITDRLAQLTSAVNLYKALGGGWNAQTAQNEPLKEEA
EECCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHC
PKMKLF
CCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11160799 [H]