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The map label for this gene is oprD [H]

Identifier: 77457504

GI number: 77457504

Start: 1449996

End: 1451255

Strand: Reverse

Name: oprD [H]

Synonym: Pfl01_1277

Alternate gene names: 77457504

Gene position: 1451255-1449996 (Counterclockwise)

Preceding gene: 77457505

Following gene: 77457503

Centisome position: 22.54

GC content: 62.06

Gene sequence:

>1260_bases
ATGACAACCTCCCCTGCGCCCTACGCACTTCCCGGTCTGATCGCCCTCGCCCTGGCCGGCATCGCGCTGCCCGCTGCGGC
TGAAGAAGCCGGTTTTATCGACGGGGCCAAGGTCAACCTGAACCTGCGCAACTTCTACATCAATCGCAACTTCACCAACC
CGACCAAGGCTCAGGGCAAGGCTGAAGAGTGGACGCAGAACTTCATCCTCGACGCCAAATCCGGTTTCACCCAAGGCACC
GTCGGGTTCGGCATGGATGTGCTGGGGTTGTACTCGGTGAAGCTCGATGGCGGCAAAGGCACCGGTGGCACGCAGTTGTT
GCCGCTGGATCATGACGGACGCCCGGCGGACAACTTCGGCCGCACCAACGTCGCGTTCAAGGCAAAACTGTCGCAAACCG
AAGTGAAGGTCGGCGAGTGGATGCCGGTGTTGCCGATCCTGCGCTCGGACGACGGCCGCTCCCTGCCGCAGACCTTTCGC
GGCGGCCAGATCACCTCGAAGGAAATCGATGGCCTGACCCTTTACGGCGGCCAGTTCCGCGCCAACAGCCCGCGCGACGA
CAGCAGCATGAGCGACATGTCGATGACCGGCAAAGCCGCGTTCACCTCGGATCGCTTCAACTTCCAGGGCGGCGAATACG
TGTTCAACGACAAGCGCACCCAGATCGGCCTGTGGAACGCCGAACTCAAGGACATCTACAGCCAGCAATACGTCAACCTG
ATCCACAGCCAGCCGCTCGGCGACTGGACCCTGGGCGCCAACCTCGGCTTCTTCTATGGCAAGGACGACGGCAGTGCCCG
CGCCGGCGACCTCGATAACAAGACCTGGTCGGGGATGTTCTCGGCAAAATACGGTGGCCACACCTTCTACGTCGGCCTGC
AGAAACTCACCGGCGACAGCGCCTGGATGCGCGTCAACGGTACCAGCGGCGGCACGTTGGCCAACGACAGCTACAACGCC
AGTTACGACAACGCGCAGGAACGCTCCTGGCAGGTCCGCCACGACTACAACTTCGCCGCCCTCGGCGTTCCCGGCCTGAC
CCTGATGAACCGCTACATCAGTGGCGACAACGTCCACACCGGGACCACCACCGACGGCAAGGAATGGGGCCGCGAGTCCG
AACTGGGCTACACCGTGCAAAGCGGCGCGCTCAAGGACCTGAACGTCAGATGGCGCAACTCGACCATGCGTCGTGATTTC
AGCAACAACGAGTTTGACGAGAACCGCCTGATCGTCAGCTATCCGATCAGCCTGCTTTAA

Upstream 100 bases:

>100_bases
ATCGCCGCCGCTCGCCCCCTGATTCCATTGAATTCCTGCGCCTCAGAAAACGGCCGCAGCGCTCCCGTTCGCCCCAAAAA
AACAAGAGAGACCCGAGCCC

Downstream 100 bases:

>100_bases
GCCGCCTGTCCGAATGGCTGGCGTTGCGCCAGCCATCATTTAAAGTGAAAATACCTGAAGGACTCAGGCGCTCCACCCCC
ACCCGCTTCCGTTATCTGTT

Product: outer membrane porin

Products: NA

Alternate protein names: Imipenem/basic amino acid-specific outer membrane pore; Outer membrane protein D2 [H]

Number of amino acids: Translated: 419; Mature: 418

Protein sequence:

>419_residues
MTTSPAPYALPGLIALALAGIALPAAAEEAGFIDGAKVNLNLRNFYINRNFTNPTKAQGKAEEWTQNFILDAKSGFTQGT
VGFGMDVLGLYSVKLDGGKGTGGTQLLPLDHDGRPADNFGRTNVAFKAKLSQTEVKVGEWMPVLPILRSDDGRSLPQTFR
GGQITSKEIDGLTLYGGQFRANSPRDDSSMSDMSMTGKAAFTSDRFNFQGGEYVFNDKRTQIGLWNAELKDIYSQQYVNL
IHSQPLGDWTLGANLGFFYGKDDGSARAGDLDNKTWSGMFSAKYGGHTFYVGLQKLTGDSAWMRVNGTSGGTLANDSYNA
SYDNAQERSWQVRHDYNFAALGVPGLTLMNRYISGDNVHTGTTTDGKEWGRESELGYTVQSGALKDLNVRWRNSTMRRDF
SNNEFDENRLIVSYPISLL

Sequences:

>Translated_419_residues
MTTSPAPYALPGLIALALAGIALPAAAEEAGFIDGAKVNLNLRNFYINRNFTNPTKAQGKAEEWTQNFILDAKSGFTQGT
VGFGMDVLGLYSVKLDGGKGTGGTQLLPLDHDGRPADNFGRTNVAFKAKLSQTEVKVGEWMPVLPILRSDDGRSLPQTFR
GGQITSKEIDGLTLYGGQFRANSPRDDSSMSDMSMTGKAAFTSDRFNFQGGEYVFNDKRTQIGLWNAELKDIYSQQYVNL
IHSQPLGDWTLGANLGFFYGKDDGSARAGDLDNKTWSGMFSAKYGGHTFYVGLQKLTGDSAWMRVNGTSGGTLANDSYNA
SYDNAQERSWQVRHDYNFAALGVPGLTLMNRYISGDNVHTGTTTDGKEWGRESELGYTVQSGALKDLNVRWRNSTMRRDF
SNNEFDENRLIVSYPISLL
>Mature_418_residues
TTSPAPYALPGLIALALAGIALPAAAEEAGFIDGAKVNLNLRNFYINRNFTNPTKAQGKAEEWTQNFILDAKSGFTQGTV
GFGMDVLGLYSVKLDGGKGTGGTQLLPLDHDGRPADNFGRTNVAFKAKLSQTEVKVGEWMPVLPILRSDDGRSLPQTFRG
GQITSKEIDGLTLYGGQFRANSPRDDSSMSDMSMTGKAAFTSDRFNFQGGEYVFNDKRTQIGLWNAELKDIYSQQYVNLI
HSQPLGDWTLGANLGFFYGKDDGSARAGDLDNKTWSGMFSAKYGGHTFYVGLQKLTGDSAWMRVNGTSGGTLANDSYNAS
YDNAQERSWQVRHDYNFAALGVPGLTLMNRYISGDNVHTGTTTDGKEWGRESELGYTVQSGALKDLNVRWRNSTMRRDFS
NNEFDENRLIVSYPISLL

Specific function: Porin with a specificity for basic amino acids. Also possesses serine protease activity [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the oprD family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005318 [H]

Pfam domain/function: PF03573 OprD [H]

EC number: NA

Molecular weight: Translated: 45942; Mature: 45810

Theoretical pI: Translated: 6.07; Mature: 6.07

Prosite motif: PS00309 GALAPTIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTSPAPYALPGLIALALAGIALPAAAEEAGFIDGAKVNLNLRNFYINRNFTNPTKAQGK
CCCCCCCCHHHHHHHHHHHHHHCCCCCHHCCCCCCCEEEEEEEEEEEECCCCCCCCCCCC
AEEWTQNFILDAKSGFTQGTVGFGMDVLGLYSVKLDGGKGTGGTQLLPLDHDGRPADNFG
HHHHHHHHEEECCCCCCCCCHHCCCEEEEEEEEEECCCCCCCCCEEEEECCCCCCCCCCC
RTNVAFKAKLSQTEVKVGEWMPVLPILRSDDGRSLPQTFRGGQITSKEIDGLTLYGGQFR
CCCEEEEEECCCCEEECCCCCCCCCEEECCCCCCCHHHHCCCCEECCCCCCEEEECCEEE
ANSPRDDSSMSDMSMTGKAAFTSDRFNFQGGEYVFNDKRTQIGLWNAELKDIYSQQYVNL
CCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCEEECCCCEEEEEECHHHHHHHHHHHHHH
IHSQPLGDWTLGANLGFFYGKDDGSARAGDLDNKTWSGMFSAKYGGHTFYVGLQKLTGDS
HHCCCCCCEEECCCEEEEEECCCCCCCCCCCCCCCCCCEEEECCCCEEEEEEEEECCCCC
AWMRVNGTSGGTLANDSYNASYDNAQERSWQVRHDYNFAALGVPGLTLMNRYISGDNVHT
EEEEEECCCCCEECCCCCCCCCCCCHHCCEEEEECCCEEEECCCCHHHHHHHCCCCCEEC
GTTTDGKEWGRESELGYTVQSGALKDLNVRWRNSTMRRDFSNNEFDENRLIVSYPISLL
CCCCCHHHCCCCCCCCEEECCCCEEECEEEECCCHHHCCCCCCCCCCCEEEEECCCCCC
>Mature Secondary Structure 
TTSPAPYALPGLIALALAGIALPAAAEEAGFIDGAKVNLNLRNFYINRNFTNPTKAQGK
CCCCCCCHHHHHHHHHHHHHHCCCCCHHCCCCCCCEEEEEEEEEEEECCCCCCCCCCCC
AEEWTQNFILDAKSGFTQGTVGFGMDVLGLYSVKLDGGKGTGGTQLLPLDHDGRPADNFG
HHHHHHHHEEECCCCCCCCCHHCCCEEEEEEEEEECCCCCCCCCEEEEECCCCCCCCCCC
RTNVAFKAKLSQTEVKVGEWMPVLPILRSDDGRSLPQTFRGGQITSKEIDGLTLYGGQFR
CCCEEEEEECCCCEEECCCCCCCCCEEECCCCCCCHHHHCCCCEECCCCCCEEEECCEEE
ANSPRDDSSMSDMSMTGKAAFTSDRFNFQGGEYVFNDKRTQIGLWNAELKDIYSQQYVNL
CCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCEEECCCCEEEEEECHHHHHHHHHHHHHH
IHSQPLGDWTLGANLGFFYGKDDGSARAGDLDNKTWSGMFSAKYGGHTFYVGLQKLTGDS
HHCCCCCCEEECCCEEEEEECCCCCCCCCCCCCCCCCCEEEECCCCEEEEEEEEECCCCC
AWMRVNGTSGGTLANDSYNASYDNAQERSWQVRHDYNFAALGVPGLTLMNRYISGDNVHT
EEEEEECCCCCEECCCCCCCCCCCCHHCCEEEEECCCEEEECCCCHHHHHHHCCCCCEEC
GTTTDGKEWGRESELGYTVQSGALKDLNVRWRNSTMRRDFSNNEFDENRLIVSYPISLL
CCCCCHHHCCCCCCCCEEECCCCEEECEEEECCCHHHCCCCCCCCCCCEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1339257; 1427017; 10984043; 8012497; 2118530; 8843159; 9636669 [H]