Click here to switch to the map view.

The map label for this gene is ydcV [H]

Identifier: 77457272

GI number: 77457272

Start: 1211205

End: 1212014

Strand: Reverse

Name: ydcV [H]

Synonym: Pfl01_1045

Alternate gene names: 77457272

Gene position: 1212014-1211205 (Counterclockwise)

Preceding gene: 77457273

Following gene: 77457271

Centisome position: 18.82

GC content: 62.22

Gene sequence:

>810_bases
ATGCACTCTGAAAAGGCTTCAATAGGCTTGCGCATTGCAGCCTGGGGCGGGCTGGTGTTTCTGCACTTCCCGATCCTGAT
CATCTTCCTCTACGCCTTCAACACCGAAGACGCGGCATTCAGCTTTCCACCGAAAGGCTTCACGCTGCATTGGTTCAGCG
TGGCGTTTTCCCGGCCGGACGTGCTGGAAGCGATCAAACTGTCGCTGCAGATCGCGGCCATCGCCACGCTGATCGCGATG
GTGCTCGGCACCCTCGCTTCCGCTGCGCTCTATCGCCGGGACTTCTTCGGCAAACAGGGCATTTCGCTGATGCTGATCCT
GCCCATCGCGCTGCCGGGGATCATCACCGGGATCGCGCTGCTGGCGACCTTCAAGACGCTGGGCATTGAGCCTGGGATGT
TCACCATCATCGTCGGCCACGCGACCTTCTGCGTGGTGATCGTCTACAACAACGTCATCGCCCGTTTGCGCCGCACCTCG
CACAGCCTGATCGAGGCGTCGATGGATCTCGGCGCCGACGGCTGGCAGACCTTCCGCTACATCATCCTGCCGAACCTCGG
CTCGGCGTTGCTCGCCGGCGGCATGCTCGCGTTTGCGCTGTCGTTCGACGAAATCATCGTCACCACTTTCACCGCCGGCC
ATGAACGCACCTTGCCGCTGTGGTTGCTCAATCAACTGAGCCGCCCGCGGGACGTGCCGGTGACCAACGTCGTGGCAATG
CTGGTGATGCTGGTGACCATGCTGCCGATCCTCGGCGCCTACTACCTGACCCGGGGTGGCGAGAGCGTGGCCGGCAGCGG
CGGTAAATGA

Upstream 100 bases:

>100_bases
GGCGCAATCGGCAACATGCCGATGGCCGCAGCGTTCACGCTGGTGCCGATCGTGCTGATCGCCATTTACCTGTCCATCGT
CAAACGTCTGGGGGCCTTCG

Downstream 100 bases:

>100_bases
CTTCCCTGACCTTTCCCACCCTGAATTTGCAGTAGAAAGAGGACAACAACATGCAAACCAAACTCTTGATCAACGGCCAA
CTGGTCAACGGCGAAGGTCC

Product: binding-protein dependent transport system inner membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 269; Mature: 269

Protein sequence:

>269_residues
MHSEKASIGLRIAAWGGLVFLHFPILIIFLYAFNTEDAAFSFPPKGFTLHWFSVAFSRPDVLEAIKLSLQIAAIATLIAM
VLGTLASAALYRRDFFGKQGISLMLILPIALPGIITGIALLATFKTLGIEPGMFTIIVGHATFCVVIVYNNVIARLRRTS
HSLIEASMDLGADGWQTFRYIILPNLGSALLAGGMLAFALSFDEIIVTTFTAGHERTLPLWLLNQLSRPRDVPVTNVVAM
LVMLVTMLPILGAYYLTRGGESVAGSGGK

Sequences:

>Translated_269_residues
MHSEKASIGLRIAAWGGLVFLHFPILIIFLYAFNTEDAAFSFPPKGFTLHWFSVAFSRPDVLEAIKLSLQIAAIATLIAM
VLGTLASAALYRRDFFGKQGISLMLILPIALPGIITGIALLATFKTLGIEPGMFTIIVGHATFCVVIVYNNVIARLRRTS
HSLIEASMDLGADGWQTFRYIILPNLGSALLAGGMLAFALSFDEIIVTTFTAGHERTLPLWLLNQLSRPRDVPVTNVVAM
LVMLVTMLPILGAYYLTRGGESVAGSGGK
>Mature_269_residues
MHSEKASIGLRIAAWGGLVFLHFPILIIFLYAFNTEDAAFSFPPKGFTLHWFSVAFSRPDVLEAIKLSLQIAAIATLIAM
VLGTLASAALYRRDFFGKQGISLMLILPIALPGIITGIALLATFKTLGIEPGMFTIIVGHATFCVVIVYNNVIARLRRTS
HSLIEASMDLGADGWQTFRYIILPNLGSALLAGGMLAFALSFDEIIVTTFTAGHERTLPLWLLNQLSRPRDVPVTNVVAM
LVMLVTMLPILGAYYLTRGGESVAGSGGK

Specific function: Probably part of the binding-protein-dependent transport system ydcSTUV; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1177

COG function: function code E; ABC-type spermidine/putrescine transport system, permease component II

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787714, Length=262, Percent_Identity=79.0076335877863, Blast_Score=384, Evalue=1e-108,
Organism=Escherichia coli, GI1787368, Length=239, Percent_Identity=31.3807531380753, Blast_Score=117, Evalue=7e-28,
Organism=Escherichia coli, GI1787081, Length=254, Percent_Identity=32.6771653543307, Blast_Score=105, Evalue=3e-24,
Organism=Escherichia coli, GI87082099, Length=183, Percent_Identity=31.1475409836066, Blast_Score=65, Evalue=7e-12,
Organism=Escherichia coli, GI1788764, Length=170, Percent_Identity=30, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1787080, Length=231, Percent_Identity=27.2727272727273, Blast_Score=63, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 29098; Mature: 29098

Theoretical pI: Translated: 9.41; Mature: 9.41

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHSEKASIGLRIAAWGGLVFLHFPILIIFLYAFNTEDAAFSFPPKGFTLHWFSVAFSRPD
CCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHCCCCCCCEECCCCCCEEEEEEEECCCCH
VLEAIKLSLQIAAIATLIAMVLGTLASAALYRRDFFGKQGISLMLILPIALPGIITGIAL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHHHH
LATFKTLGIEPGMFTIIVGHATFCVVIVYNNVIARLRRTSHSLIEASMDLGADGWQTFRY
HHHHHHHCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHEEEE
IILPNLGSALLAGGMLAFALSFDEIIVTTFTAGHERTLPLWLLNQLSRPRDVPVTNVVAM
EEECCCCHHHHHHHHHHHHHHHHHEEEEEEECCCCCCCHHHHHHHHCCCCCCCHHHHHHH
LVMLVTMLPILGAYYLTRGGESVAGSGGK
HHHHHHHHHHHHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure
MHSEKASIGLRIAAWGGLVFLHFPILIIFLYAFNTEDAAFSFPPKGFTLHWFSVAFSRPD
CCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHCCCCCCCEECCCCCCEEEEEEEECCCCH
VLEAIKLSLQIAAIATLIAMVLGTLASAALYRRDFFGKQGISLMLILPIALPGIITGIAL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHHHH
LATFKTLGIEPGMFTIIVGHATFCVVIVYNNVIARLRRTSHSLIEASMDLGADGWQTFRY
HHHHHHHCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHEEEE
IILPNLGSALLAGGMLAFALSFDEIIVTTFTAGHERTLPLWLLNQLSRPRDVPVTNVVAM
EEECCCCHHHHHHHHHHHHHHHHHEEEEEEECCCCCCCHHHHHHHHCCCCCCCHHHHHHH
LVMLVTMLPILGAYYLTRGGESVAGSGGK
HHHHHHHHHHHHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]