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The map label for this gene is ydcU [H]

Identifier: 77457273

GI number: 77457273

Start: 1212004

End: 1212939

Strand: Reverse

Name: ydcU [H]

Synonym: Pfl01_1046

Alternate gene names: 77457273

Gene position: 1212939-1212004 (Counterclockwise)

Preceding gene: 77457274

Following gene: 77457272

Centisome position: 18.84

GC content: 62.61

Gene sequence:

>936_bases
ATGACCGCCCTCGCCCTCCCGCAATCGGCGCCGTTGCGCAGGTTTTCCAACCTGCTCTATCGCAAGCCGAATCTGTATCT
GTCGATGCTGCTGGTGCCGCCGCTGCTGTGGTTCGGCGCGATCTATCTGGGCTCGCTGCTGGTGCTGTTGTGGCAAGGTT
TCTACACCTTCGACGACTTCACCATGGCGGTCACCCCGGACCTGACCCTGGCCAATTTCGCCGCGCTGTTTCAGCCGTCG
AACTTCGACATCATCCTGCGCACCCTGAGCATGGCCGTCGTGGTGTCGATCGCCAGCGCCATCGTCGCGTTCCCGATTGC
CTACTACATGGCGCGCTACACCACCGGCAAGACCAAGGCGTTTTTCTACATCGCGGTGATGATGCCGATGTGGGCCAGTT
ACATCGTCAAGGCCTACGCCTGGACGCTGCTGCTGGCCAAGGGCGGCGTGGCGCAGTGGTTCGTTCAGCACCTGGGGCTG
GAGCCGGTTCTGCAGTTCATTCTGGGGATTCCCGGGGTCGGTGGCAGCACCTTGTCGACCTCGCATCTGGGGCGGTTCAT
GGTGTTCGTCTACATCTGGCTGCCGTTCATGATCCTGCCGATCCAGGCCTCGCTGGAACGCCTGCCGCCGTCGTTGCTGC
AAGCCTCCGCCGACCTCGGGGCCAAGCCGCGCCAGACCTTCATGCAGGTGATTCTGCCGCTGTCGGTGCCAGGGATTGCG
GCCGGTTCGATCTTCACCTTTTCGCTGACCCTGGGCGACTTCATCGTGCCGCAACTGGTGGGCCCGCCGGGCTACTTCGT
CGGCAGCATGGTCTACGCGCAACAAGGCGCAATCGGCAACATGCCGATGGCCGCAGCGTTCACGCTGGTGCCGATCGTGC
TGATCGCCATTTACCTGTCCATCGTCAAACGTCTGGGGGCCTTCGATGCACTCTGA

Upstream 100 bases:

>100_bases
GACACCAGCTCGCAGCACCAGACCGGTCAGCGCATCAGCGCGCGCTGGGCGCGGGAAGCGATGATTCCGTTGCACGACAC
CGTTGCGAGCGGGGTGTGAC

Downstream 100 bases:

>100_bases
AAAGGCTTCAATAGGCTTGCGCATTGCAGCCTGGGGCGGGCTGGTGTTTCTGCACTTCCCGATCCTGATCATCTTCCTCT
ACGCCTTCAACACCGAAGAC

Product: binding-protein dependent transport system inner membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 311; Mature: 310

Protein sequence:

>311_residues
MTALALPQSAPLRRFSNLLYRKPNLYLSMLLVPPLLWFGAIYLGSLLVLLWQGFYTFDDFTMAVTPDLTLANFAALFQPS
NFDIILRTLSMAVVVSIASAIVAFPIAYYMARYTTGKTKAFFYIAVMMPMWASYIVKAYAWTLLLAKGGVAQWFVQHLGL
EPVLQFILGIPGVGGSTLSTSHLGRFMVFVYIWLPFMILPIQASLERLPPSLLQASADLGAKPRQTFMQVILPLSVPGIA
AGSIFTFSLTLGDFIVPQLVGPPGYFVGSMVYAQQGAIGNMPMAAAFTLVPIVLIAIYLSIVKRLGAFDAL

Sequences:

>Translated_311_residues
MTALALPQSAPLRRFSNLLYRKPNLYLSMLLVPPLLWFGAIYLGSLLVLLWQGFYTFDDFTMAVTPDLTLANFAALFQPS
NFDIILRTLSMAVVVSIASAIVAFPIAYYMARYTTGKTKAFFYIAVMMPMWASYIVKAYAWTLLLAKGGVAQWFVQHLGL
EPVLQFILGIPGVGGSTLSTSHLGRFMVFVYIWLPFMILPIQASLERLPPSLLQASADLGAKPRQTFMQVILPLSVPGIA
AGSIFTFSLTLGDFIVPQLVGPPGYFVGSMVYAQQGAIGNMPMAAAFTLVPIVLIAIYLSIVKRLGAFDAL
>Mature_310_residues
TALALPQSAPLRRFSNLLYRKPNLYLSMLLVPPLLWFGAIYLGSLLVLLWQGFYTFDDFTMAVTPDLTLANFAALFQPSN
FDIILRTLSMAVVVSIASAIVAFPIAYYMARYTTGKTKAFFYIAVMMPMWASYIVKAYAWTLLLAKGGVAQWFVQHLGLE
PVLQFILGIPGVGGSTLSTSHLGRFMVFVYIWLPFMILPIQASLERLPPSLLQASADLGAKPRQTFMQVILPLSVPGIAA
GSIFTFSLTLGDFIVPQLVGPPGYFVGSMVYAQQGAIGNMPMAAAFTLVPIVLIAIYLSIVKRLGAFDAL

Specific function: Probably part of the binding-protein-dependent transport system ydcSTUV; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1176

COG function: function code E; ABC-type spermidine/putrescine transport system, permease component I

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787713, Length=311, Percent_Identity=76.8488745980707, Blast_Score=468, Evalue=1e-133,
Organism=Escherichia coli, GI1787080, Length=243, Percent_Identity=30.4526748971193, Blast_Score=118, Evalue=6e-28,
Organism=Escherichia coli, GI1787369, Length=259, Percent_Identity=28.957528957529, Blast_Score=112, Evalue=2e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 34042; Mature: 33911

Theoretical pI: Translated: 9.88; Mature: 9.88

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.5 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTALALPQSAPLRRFSNLLYRKPNLYLSMLLVPPLLWFGAIYLGSLLVLLWQGFYTFDDF
CCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHCCE
TMAVTPDLTLANFAALFQPSNFDIILRTLSMAVVVSIASAIVAFPIAYYMARYTTGKTKA
EEEECCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH
FFYIAVMMPMWASYIVKAYAWTLLLAKGGVAQWFVQHLGLEPVLQFILGIPGVGGSTLST
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCH
SHLGRFMVFVYIWLPFMILPIQASLERLPPSLLQASADLGAKPRQTFMQVILPLSVPGIA
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCC
AGSIFTFSLTLGDFIVPQLVGPPGYFVGSMVYAQQGAIGNMPMAAAFTLVPIVLIAIYLS
CCCCEEEEEHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHH
IVKRLGAFDAL
HHHHHHHCCCC
>Mature Secondary Structure 
TALALPQSAPLRRFSNLLYRKPNLYLSMLLVPPLLWFGAIYLGSLLVLLWQGFYTFDDF
CCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHCCE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HHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]