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The map label for this gene is yvoA [H]

Identifier: 77457234

GI number: 77457234

Start: 1173368

End: 1174171

Strand: Reverse

Name: yvoA [H]

Synonym: Pfl01_1007

Alternate gene names: 77457234

Gene position: 1174171-1173368 (Counterclockwise)

Preceding gene: 77457235

Following gene: 77457233

Centisome position: 18.24

GC content: 62.31

Gene sequence:

>804_bases
ATGCAAGTGGTATTAGGTTTCGCCCGACTACCGAGCGACAACAATCCTATATCAGCGCCGGAAATGCCTTACATGAATGA
CCTCCACGCCCTACGCCCCGACGATTCCCAGCCGACGCCGCTGTACCTGCAACTGGCGCGCAACCTGGAAGCCGCGATCC
ATGCCGGCCAGTGGAAAGCCGAACAGGCGATGCCCTCGGAGCGCAATCTCAGCGAGATGCTGGGGATTTCCCGGGTCACC
GCGCGCAAAGCGCTGGAAGTCCTGCTCGATCAAGGTTTGATCCGCCGCCTGCAAGGCTCCGGCACCTTCATCACCCCACG
CCTTGAACAACCGCTGTCGCGCCTCTCGGGTTTCAGCGAAATGCTCCGTCTCAAGGGCTTCGTGCCCAGCTCGCAATGGC
TGGAGCGGGAAATCACCCTGCCGACCCACGAAGAACTGATCCGCCTCGGCCTGTCGCCGAACGACAAGGTCGCGCGCATG
AAACGCCTGCGCAAGGCCGACGACACCGTGATGGCCATCGAGATGAGCACCCTGCCCGCCTCGATCATGCCCAAGCCACA
GGTGGTGGGCGATTCCCTCTACGAACACCTCGACAGCATCGGCAAGCCGATCGTGCGCGCCTTGCAGCACATCCAGGCGA
TCAACGCCTCGGACGAGTTCGCCGCACTCGTCGGCATCGCCCCCGGCACCGCGATGCTGCTGATGACCCGGGTCGGCTAC
CTGGAAGACAACACGCCGATCGAAGTCACCGACACCTATTGCCGCAACGACTACTACGACTTTGTTGCAGAGCTTCGCCG
CTGA

Upstream 100 bases:

>100_bases
TTTTGCTTTCCAGCGCCCAGCGCTAATACCACTTGAAACCACCGAGCCTGAAACACCCGATTCCAAAGGACTACAGGCCT
TTCCGACGCGTTGACATGGT

Downstream 100 bases:

>100_bases
TCAGCAGCCAGGCCAAACGAGAGAAGCGAAATGTCCGAAGACAACATCCTCACCGCTGACGGCTGGATTCGCGGCCGGCT
GATCCACGAACACGGCAGAG

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 267; Mature: 267

Protein sequence:

>267_residues
MQVVLGFARLPSDNNPISAPEMPYMNDLHALRPDDSQPTPLYLQLARNLEAAIHAGQWKAEQAMPSERNLSEMLGISRVT
ARKALEVLLDQGLIRRLQGSGTFITPRLEQPLSRLSGFSEMLRLKGFVPSSQWLEREITLPTHEELIRLGLSPNDKVARM
KRLRKADDTVMAIEMSTLPASIMPKPQVVGDSLYEHLDSIGKPIVRALQHIQAINASDEFAALVGIAPGTAMLLMTRVGY
LEDNTPIEVTDTYCRNDYYDFVAELRR

Sequences:

>Translated_267_residues
MQVVLGFARLPSDNNPISAPEMPYMNDLHALRPDDSQPTPLYLQLARNLEAAIHAGQWKAEQAMPSERNLSEMLGISRVT
ARKALEVLLDQGLIRRLQGSGTFITPRLEQPLSRLSGFSEMLRLKGFVPSSQWLEREITLPTHEELIRLGLSPNDKVARM
KRLRKADDTVMAIEMSTLPASIMPKPQVVGDSLYEHLDSIGKPIVRALQHIQAINASDEFAALVGIAPGTAMLLMTRVGY
LEDNTPIEVTDTYCRNDYYDFVAELRR
>Mature_267_residues
MQVVLGFARLPSDNNPISAPEMPYMNDLHALRPDDSQPTPLYLQLARNLEAAIHAGQWKAEQAMPSERNLSEMLGISRVT
ARKALEVLLDQGLIRRLQGSGTFITPRLEQPLSRLSGFSEMLRLKGFVPSSQWLEREITLPTHEELIRLGLSPNDKVARM
KRLRKADDTVMAIEMSTLPASIMPKPQVVGDSLYEHLDSIGKPIVRALQHIQAINASDEFAALVGIAPGTAMLLMTRVGY
LEDNTPIEVTDTYCRNDYYDFVAELRR

Specific function: Acts as a weak repressor of yflG expression [H]

COG id: COG2188

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788418, Length=226, Percent_Identity=30.0884955752212, Blast_Score=125, Evalue=3e-30,
Organism=Escherichia coli, GI1786950, Length=227, Percent_Identity=30.3964757709251, Blast_Score=98, Evalue=6e-22,
Organism=Escherichia coli, GI87082252, Length=222, Percent_Identity=25.6756756756757, Blast_Score=76, Evalue=3e-15,
Organism=Escherichia coli, GI1790118, Length=232, Percent_Identity=25, Blast_Score=65, Evalue=7e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000524
- InterPro:   IPR011663
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00392 GntR; PF07702 UTRA [H]

EC number: NA

Molecular weight: Translated: 29906; Mature: 29906

Theoretical pI: Translated: 6.05; Mature: 6.05

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
4.5 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
4.5 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQVVLGFARLPSDNNPISAPEMPYMNDLHALRPDDSQPTPLYLQLARNLEAAIHAGQWKA
CCEEEEEHHCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCH
EQAMPSERNLSEMLGISRVTARKALEVLLDQGLIRRLQGSGTFITPRLEQPLSRLSGFSE
HHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCHHHHHHHHHHHHHH
MLRLKGFVPSSQWLEREITLPTHEELIRLGLSPNDKVARMKRLRKADDTVMAIEMSTLPA
HHHHHCCCCCHHHHHHCCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCCEEEEEECCCCC
SIMPKPQVVGDSLYEHLDSIGKPIVRALQHIQAINASDEFAALVGIAPGTAMLLMTRVGY
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHEECCCHHHHHHHHHHHC
LEDNTPIEVTDTYCRNDYYDFVAELRR
CCCCCCEEEEHHHHHCHHHHHHHHHCC
>Mature Secondary Structure
MQVVLGFARLPSDNNPISAPEMPYMNDLHALRPDDSQPTPLYLQLARNLEAAIHAGQWKA
CCEEEEEHHCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCH
EQAMPSERNLSEMLGISRVTARKALEVLLDQGLIRRLQGSGTFITPRLEQPLSRLSGFSE
HHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCHHHHHHHHHHHHHH
MLRLKGFVPSSQWLEREITLPTHEELIRLGLSPNDKVARMKRLRKADDTVMAIEMSTLPA
HHHHHCCCCCHHHHHHCCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCCEEEEEECCCCC
SIMPKPQVVGDSLYEHLDSIGKPIVRALQHIQAINASDEFAALVGIAPGTAMLLMTRVGY
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHEECCCHHHHHHHHHHHC
LEDNTPIEVTDTYCRNDYYDFVAELRR
CCCCCCEEEEHHHHHCHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]