| Definition | Pseudomonas fluorescens Pf0-1 chromosome, complete genome. |
|---|---|
| Accession | NC_007492 |
| Length | 6,438,405 |
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The map label for this gene is yadT [C]
Identifier: 77456820
GI number: 77456820
Start: 683926
End: 684873
Strand: Reverse
Name: yadT [C]
Synonym: Pfl01_0592
Alternate gene names: 77456820
Gene position: 684873-683926 (Counterclockwise)
Preceding gene: 77456821
Following gene: 77456819
Centisome position: 10.64
GC content: 60.23
Gene sequence:
>948_bases ATGACTGTGCGCTCCCTGCTTTGCCTCGCCCTGTTGCTGGGCACCACCCAAGCCTTTGCCGAGGCCACGAAGTACCCGCT GACGATCCACAGCTGCAATCGCGAAGTGACCTTCAAGCAAGCGCCGAAACACGCGGTCAGTCACGACATCAACATGACCC AGATGATGCTCGTCCTCGGCCTCAAATCGAAGATGGCCGGCTACAGCGGCGTCAGTGGCTGGAAATCGGTGACGCCTGAA ATGCAGTCGCTGCTCGACGGTTTGCCGGAACTGGCGGCCAAGTACCCGTCGGTAGAAACCCTGCTCAACGCCAACGTCGA TTTCTTCTTCGCCGGCTGGGATTACGGCATGCGCGTCGGTGGCGATCTCACCCCGCAGACCCTGCAACCGCTGGGCATCA ACGTCTATGAGCTGACCGAGTCCTGCGCCTTCGTGATGAAACGCCCGGCCGCCACGCTGGACGACACTTACAACGACCTG CGCAACCTCGGAAAGATTTTCGACGTGCAGGACCGTGCCAACGCATTGATCGCAGACATGCAAAGTCAGGTCGCGGAAAT TCGCAAAGACCTGCCTGCCGAAAAACCACGGGTATTCCTGTACGACAGCGGCGAAGACCGCGCCATGACCTCCGGCCGCC TCGGCATGCCGCAAGCGCTGATCGACGCCGCCGGCGGGCGCAACGTTCTCGATGACGTCGAAGCGAGCTGGACCCGGGTC AATTGGGAAACCGTGGTCGAGCGCAATCCGCAGGTGATCGTGATCGTCGACTACAGCGAAATCACCGCCGAGCAGAAGAT TGAATTCCTGCTGAAGAACAAGGCCCTGCAATCGGTGGACGCGATCAAGAACCAGCGCTTTATTGTCATCCCCTACGTGC AGGCCACGCCGGGGATCGACAACGTGCTGGCGGTTGAAACCCTGGCCAAAGGGTTCCACGGCGAATGA
Upstream 100 bases:
>100_bases TGCTCACCGTAGAACTGCTGCGCGACGTGTTCGGCGTCGAAGCATTGATCGATTCCCACCCCCTCCACGGCTACCCGCGA ATCACCTGGATAACCCGACC
Downstream 100 bases:
>100_bases TCGATCGTCGCTATGCGCTGCTGCTGATCGCCCTCGGTGCCGTGCTGCTGGTGTCGTGCGTGGTGTCGCTGGGCTTCGGC CCGGCACGGGTGCCGGTGGA
Product: periplasmic binding protein
Products: NA
Alternate protein names: Iron Transport Lipoprotein; Vitamin; ABC Transporter; Iron ABC Transporter Periplasmic Protein; Iron ABC Transporter; Transporter Subunit; Fe3+-Hydroxamate ABC Transporter Periplasmic Protein; Fe3+ ABC Transporter Periplasmic Protein; Iron Compound ABC Transporter; Iron(III)-Siderophore ABC Transporter Periplasmic Subunit; Lipoprotein Involved In Iron Transport
Number of amino acids: Translated: 315; Mature: 314
Protein sequence:
>315_residues MTVRSLLCLALLLGTTQAFAEATKYPLTIHSCNREVTFKQAPKHAVSHDINMTQMMLVLGLKSKMAGYSGVSGWKSVTPE MQSLLDGLPELAAKYPSVETLLNANVDFFFAGWDYGMRVGGDLTPQTLQPLGINVYELTESCAFVMKRPAATLDDTYNDL RNLGKIFDVQDRANALIADMQSQVAEIRKDLPAEKPRVFLYDSGEDRAMTSGRLGMPQALIDAAGGRNVLDDVEASWTRV NWETVVERNPQVIVIVDYSEITAEQKIEFLLKNKALQSVDAIKNQRFIVIPYVQATPGIDNVLAVETLAKGFHGE
Sequences:
>Translated_315_residues MTVRSLLCLALLLGTTQAFAEATKYPLTIHSCNREVTFKQAPKHAVSHDINMTQMMLVLGLKSKMAGYSGVSGWKSVTPE MQSLLDGLPELAAKYPSVETLLNANVDFFFAGWDYGMRVGGDLTPQTLQPLGINVYELTESCAFVMKRPAATLDDTYNDL RNLGKIFDVQDRANALIADMQSQVAEIRKDLPAEKPRVFLYDSGEDRAMTSGRLGMPQALIDAAGGRNVLDDVEASWTRV NWETVVERNPQVIVIVDYSEITAEQKIEFLLKNKALQSVDAIKNQRFIVIPYVQATPGIDNVLAVETLAKGFHGE >Mature_314_residues TVRSLLCLALLLGTTQAFAEATKYPLTIHSCNREVTFKQAPKHAVSHDINMTQMMLVLGLKSKMAGYSGVSGWKSVTPEM QSLLDGLPELAAKYPSVETLLNANVDFFFAGWDYGMRVGGDLTPQTLQPLGINVYELTESCAFVMKRPAATLDDTYNDLR NLGKIFDVQDRANALIADMQSQVAEIRKDLPAEKPRVFLYDSGEDRAMTSGRLGMPQALIDAAGGRNVLDDVEASWTRVN WETVVERNPQVIVIVDYSEITAEQKIEFLLKNKALQSVDAIKNQRFIVIPYVQATPGIDNVLAVETLAKGFHGE
Specific function: Unknown
COG id: COG0614
COG function: function code P; ABC-type Fe3+-hydroxamate transport system, periplasmic component
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 34804; Mature: 34673
Theoretical pI: Translated: 4.93; Mature: 4.93
Prosite motif: PS50983 FE_B12_PBP
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 3.5 %Met (Translated Protein) 4.4 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 3.2 %Met (Mature Protein) 4.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTVRSLLCLALLLGTTQAFAEATKYPLTIHSCNREVTFKQAPKHAVSHDINMTQMMLVLG CCHHHHHHHHHHHHCHHHHHHHHCCCEEEECCCCEEEHHHCCHHHHHCCCCHHHHHHHHH LKSKMAGYSGVSGWKSVTPEMQSLLDGLPELAAKYPSVETLLNANVDFFFAGWDYGMRVG HHHHHCCCCCCCCHHHCCHHHHHHHHHHHHHHHHCCCHHHHHCCCCEEEEECCCCCEECC GDLTPQTLQPLGINVYELTESCAFVMKRPAATLDDTYNDLRNLGKIFDVQDRANALIADM CCCCHHHHCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHH QSQVAEIRKDLPAEKPRVFLYDSGEDRAMTSGRLGMPQALIDAAGGRNVLDDVEASWTRV HHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCCCHHHHHCCCCCCHHHHHHCHHEEC NWETVVERNPQVIVIVDYSEITAEQKIEFLLKNKALQSVDAIKNQRFIVIPYVQATPGID CHHHHHCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCC NVLAVETLAKGFHGE HHHHHHHHHHCCCCC >Mature Secondary Structure TVRSLLCLALLLGTTQAFAEATKYPLTIHSCNREVTFKQAPKHAVSHDINMTQMMLVLG CHHHHHHHHHHHHCHHHHHHHHCCCEEEECCCCEEEHHHCCHHHHHCCCCHHHHHHHHH LKSKMAGYSGVSGWKSVTPEMQSLLDGLPELAAKYPSVETLLNANVDFFFAGWDYGMRVG HHHHHCCCCCCCCHHHCCHHHHHHHHHHHHHHHHCCCHHHHHCCCCEEEEECCCCCEECC GDLTPQTLQPLGINVYELTESCAFVMKRPAATLDDTYNDLRNLGKIFDVQDRANALIADM CCCCHHHHCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHH QSQVAEIRKDLPAEKPRVFLYDSGEDRAMTSGRLGMPQALIDAAGGRNVLDDVEASWTRV HHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCCCHHHHHCCCCCCHHHHHHCHHEEC NWETVVERNPQVIVIVDYSEITAEQKIEFLLKNKALQSVDAIKNQRFIVIPYVQATPGID CHHHHHCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCC NVLAVETLAKGFHGE HHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA