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The map label for this gene is yecS [H]

Identifier: 77456471

GI number: 77456471

Start: 286335

End: 287000

Strand: Reverse

Name: yecS [H]

Synonym: Pfl01_0243

Alternate gene names: 77456471

Gene position: 287000-286335 (Counterclockwise)

Preceding gene: 77456472

Following gene: 77456470

Centisome position: 4.46

GC content: 61.56

Gene sequence:

>666_bases
ATGGAAGAAGCTTTCCAACTCGCTCTGGACTCCGCGCCCTTCCTGTTGAAGGGCGCGTACTACACGGTAATCCTCAGCCT
CGGCGGCATGTTTTTCGGCCTGCTGCTGGGCTTTGGCCTGGCGTTGATGCGCCTGTCGCGTTTCAAGTCGGTCAGCTGGC
TGGCCCGCATCTACGTGTCGTTCTTTCGCGGCACGCCGTTGCTGGTGCAACTGTTCGTGATCTATTACGGCTTGCCGCAA
TTGGGCATGGAACTCGACCCGCTGCCGGCGGCACTGATCGGCTTCTCGCTGAACATGGCCGCCTACGCCTGTGAAATCCT
GCGTGCCGCGATCGGTTCGATCGAACGCGGCCAGTGGGAAGCCGCTGCGAGCATCGGCATGACCCGTGCGCAGACCCTGC
GCCGGGCCATCCTGCCGCAGGCGATGCGCACGGCGTTGCCGCCGCTGGGCAATAGTTTCATTTCACTGGTCAAGGACACC
GCACTGGCCGCCACCATTCAGGTGCCGGAGCTGTTCCGTCAGGCACAGCTGATTACCGCCCGGACTTTCGAAGTCTTCAC
CATGTATCTTGCCGCCGCGCTGATCTACTGGATTCTGGCCACGGTGCTGTCGCACTTCCAGAACAAGTTGGAAGAGCGGG
TCAATCGGCACGACCAGGAGTCCTGA

Upstream 100 bases:

>100_bases
AACTGCTGGCCGCCGTGAACAAGGCCCTCGACGAACTGCGTGCCGACGGCACCCTTGAGAAGCTGTCCAAGAAATACTTC
AACGCTGACGTCACCCAATA

Downstream 100 bases:

>100_bases
CCCCATGATTGTCGTGGAAAAACTGACAAAGCAGTTCAAGGGTCAAGTCGTGCTCAACGGCATTGACCTGGAGGTGAAGG
AAGGCGAGGTCGTGGCAATC

Product: amino acid ABC transporter permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 221; Mature: 221

Protein sequence:

>221_residues
MEEAFQLALDSAPFLLKGAYYTVILSLGGMFFGLLLGFGLALMRLSRFKSVSWLARIYVSFFRGTPLLVQLFVIYYGLPQ
LGMELDPLPAALIGFSLNMAAYACEILRAAIGSIERGQWEAAASIGMTRAQTLRRAILPQAMRTALPPLGNSFISLVKDT
ALAATIQVPELFRQAQLITARTFEVFTMYLAAALIYWILATVLSHFQNKLEERVNRHDQES

Sequences:

>Translated_221_residues
MEEAFQLALDSAPFLLKGAYYTVILSLGGMFFGLLLGFGLALMRLSRFKSVSWLARIYVSFFRGTPLLVQLFVIYYGLPQ
LGMELDPLPAALIGFSLNMAAYACEILRAAIGSIERGQWEAAASIGMTRAQTLRRAILPQAMRTALPPLGNSFISLVKDT
ALAATIQVPELFRQAQLITARTFEVFTMYLAAALIYWILATVLSHFQNKLEERVNRHDQES
>Mature_221_residues
MEEAFQLALDSAPFLLKGAYYTVILSLGGMFFGLLLGFGLALMRLSRFKSVSWLARIYVSFFRGTPLLVQLFVIYYGLPQ
LGMELDPLPAALIGFSLNMAAYACEILRAAIGSIERGQWEAAASIGMTRAQTLRRAILPQAMRTALPPLGNSFISLVKDT
ALAATIQVPELFRQAQLITARTFEVFTMYLAAALIYWILATVLSHFQNKLEERVNRHDQES

Specific function: Probably part of the binding-protein-dependent transport system yecCS for an amino acid; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0765

COG function: function code E; ABC-type amino acid transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1788226, Length=220, Percent_Identity=75, Blast_Score=335, Evalue=1e-93,
Organism=Escherichia coli, GI1787030, Length=205, Percent_Identity=38.0487804878049, Blast_Score=134, Evalue=6e-33,
Organism=Escherichia coli, GI1786873, Length=211, Percent_Identity=37.4407582938389, Blast_Score=122, Evalue=3e-29,
Organism=Escherichia coli, GI1787087, Length=244, Percent_Identity=29.9180327868852, Blast_Score=115, Evalue=3e-27,
Organism=Escherichia coli, GI1787086, Length=211, Percent_Identity=33.175355450237, Blast_Score=112, Evalue=2e-26,
Organism=Escherichia coli, GI1788645, Length=231, Percent_Identity=33.3333333333333, Blast_Score=107, Evalue=8e-25,
Organism=Escherichia coli, GI87082239, Length=204, Percent_Identity=36.2745098039216, Blast_Score=104, Evalue=5e-24,
Organism=Escherichia coli, GI1788646, Length=219, Percent_Identity=30.1369863013699, Blast_Score=99, Evalue=3e-22,
Organism=Escherichia coli, GI1786874, Length=228, Percent_Identity=32.8947368421053, Blast_Score=97, Evalue=9e-22,
Organism=Escherichia coli, GI48994930, Length=166, Percent_Identity=35.5421686746988, Blast_Score=79, Evalue=2e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010065
- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 24590; Mature: 24590

Theoretical pI: Translated: 9.33; Mature: 9.33

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEEAFQLALDSAPFLLKGAYYTVILSLGGMFFGLLLGFGLALMRLSRFKSVSWLARIYVS
CCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FFRGTPLLVQLFVIYYGLPQLGMELDPLPAALIGFSLNMAAYACEILRAAIGSIERGQWE
HHCCCHHHHHHHHHHHCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHH
AAASIGMTRAQTLRRAILPQAMRTALPPLGNSFISLVKDTALAATIQVPELFRQAQLITA
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RTFEVFTMYLAAALIYWILATVLSHFQNKLEERVNRHDQES
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MEEAFQLALDSAPFLLKGAYYTVILSLGGMFFGLLLGFGLALMRLSRFKSVSWLARIYVS
CCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FFRGTPLLVQLFVIYYGLPQLGMELDPLPAALIGFSLNMAAYACEILRAAIGSIERGQWE
HHCCCHHHHHHHHHHHCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHH
AAASIGMTRAQTLRRAILPQAMRTALPPLGNSFISLVKDTALAATIQVPELFRQAQLITA
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RTFEVFTMYLAAALIYWILATVLSHFQNKLEERVNRHDQES
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]