Definition Pseudomonas fluorescens Pf0-1 chromosome, complete genome.
Accession NC_007492
Length 6,438,405

Click here to switch to the map view.

The map label for this gene is ydhJ [C]

Identifier: 77456374

GI number: 77456374

Start: 175893

End: 177212

Strand: Direct

Name: ydhJ [C]

Synonym: Pfl01_0146

Alternate gene names: 77456374

Gene position: 175893-177212 (Clockwise)

Preceding gene: 77456373

Following gene: 77456375

Centisome position: 2.73

GC content: 65.83

Gene sequence:

>1320_bases
GTGAACGCCCCGGTGAGCGGCGCCGCCGAGCAGGTGTTCGCGCGGTTTCTCGATCTCGAACGGCAGACCCGCGCCGCTCA
TGATATTTCGCAACTGGCCTACAGCCTGGTCAATGACGGTCAGTCGCTGTTCGGTTTTCGCCATGCGGCGCTGTTGATCG
CCGGCAAGGTGCAGGCGGTGACCGGGGTCAGCGCAGTGGAGCCGAATGCGCCGTTCGTGGCATTCGTCGAGCAGGCCGTG
GCGCAGTTGTTCAAGCAGGATGTGCTGAAACAGGCGCGGGTGATCACGCCGGAAATGGTCGGTGAATCGATTCAGGCCGA
CTGGCGCAGTCTGTCGGCCATGCAAGTGTTCTGGCTGCCGTTGATCGACCGTCAGGGTCAGGTGTTCGGCGGTTTGTGGC
TGGCCCGTGATCTGCCGTGGAACCCTTCCGAACAAGTGCTGCTGTCGCAACTGGGCGACACCTACAGCCACGCCTGGCTG
GCGTTGCAACCACGCAAGCCGTGGCGCTTGCGCTGGACCCGCAAACGTCAGGTGGCGCTGGTCGCCGTGTTGTTGCTCGG
GCTGTTGATCCCGGTGCGCCAGTCGGTGCTGGCGCCCGCCGAAGTGGTGCCTCAGGGCGGGCGGGTTGTCGCCGCACCGC
TGGACGGGGTGATCGCCGAGTTTCTGGTCAAACCCAACCAGAGTGTGAAAACCGGCGACCTGTTGCTGCGTTTTGAAAGC
ACGACGCTGAAGGCTCAGGCCGATGTCGCCGAGCGTGCACTCGGGGTCGCCGAAGCGGAACTCAAAGCCAATTCCCAGCG
CTCGTTCGTTGATGCCGAATCCAGCTCCCGGGTCGATCTGCTGGCCGCCCGCGCCGAACAGAAACGCGCCGAACGCGACT
ACGCCCGCGAACTGCTCAACCGCAGCGAAGTGCGCGCCGAGCGCGACGGCATTGCGGTGTTCGCCGATGCCGAGCGCTGG
ACCGGCAAACCAGTGCAGACCGGCGAACGGCTGATGGAAATCGCCGACCCGAGCCAGGCCGAACTGCGCATCGAACTAGC
CGTGGGCGACGCGATCTCGCTGGAGCCGGGCGCCGAAGTCGCGCTGTTTCTCGACAGCGACCCGTTGCAACGCCACCTCG
CCACCCTCGAGCGTTCCGCTTACGAGGCACAGCCCACCGCCGGCGGCCAGTTGGCCTATCGGCTGGACGCCAATTTCGCC
GACGCCCCGCCGCGTATCGGCCTGCGCGGCACCGCAAAAATTTTCGGCGAGCGTGCGCCGCTGGCACTGTACCTGCTGCG
GCGTCCGCTCGCCGGACTGCGCCAGAGCGTAGGTCTGTAA

Upstream 100 bases:

>100_bases
TCGATGAAGGCAGCCAGACCCTGTTGCTGGTCGCCACACTCCCCGAAGCCAAAGGCTTGCTCGCCGGCATGAGCGGCACC
GCGCATTTTCCGGAGTTTAA

Downstream 100 bases:

>100_bases
ATGACCCTGCCGAACCTGCGTGCCGACCTGCAATTGTCGCCCGCGGCGCCGGCATTGGACGGTTCGCCGCGCTGGACCCT
GGCCGACCCGGTGCGCGGGC

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 439; Mature: 439

Protein sequence:

>439_residues
MNAPVSGAAEQVFARFLDLERQTRAAHDISQLAYSLVNDGQSLFGFRHAALLIAGKVQAVTGVSAVEPNAPFVAFVEQAV
AQLFKQDVLKQARVITPEMVGESIQADWRSLSAMQVFWLPLIDRQGQVFGGLWLARDLPWNPSEQVLLSQLGDTYSHAWL
ALQPRKPWRLRWTRKRQVALVAVLLLGLLIPVRQSVLAPAEVVPQGGRVVAAPLDGVIAEFLVKPNQSVKTGDLLLRFES
TTLKAQADVAERALGVAEAELKANSQRSFVDAESSSRVDLLAARAEQKRAERDYARELLNRSEVRAERDGIAVFADAERW
TGKPVQTGERLMEIADPSQAELRIELAVGDAISLEPGAEVALFLDSDPLQRHLATLERSAYEAQPTAGGQLAYRLDANFA
DAPPRIGLRGTAKIFGERAPLALYLLRRPLAGLRQSVGL

Sequences:

>Translated_439_residues
MNAPVSGAAEQVFARFLDLERQTRAAHDISQLAYSLVNDGQSLFGFRHAALLIAGKVQAVTGVSAVEPNAPFVAFVEQAV
AQLFKQDVLKQARVITPEMVGESIQADWRSLSAMQVFWLPLIDRQGQVFGGLWLARDLPWNPSEQVLLSQLGDTYSHAWL
ALQPRKPWRLRWTRKRQVALVAVLLLGLLIPVRQSVLAPAEVVPQGGRVVAAPLDGVIAEFLVKPNQSVKTGDLLLRFES
TTLKAQADVAERALGVAEAELKANSQRSFVDAESSSRVDLLAARAEQKRAERDYARELLNRSEVRAERDGIAVFADAERW
TGKPVQTGERLMEIADPSQAELRIELAVGDAISLEPGAEVALFLDSDPLQRHLATLERSAYEAQPTAGGQLAYRLDANFA
DAPPRIGLRGTAKIFGERAPLALYLLRRPLAGLRQSVGL
>Mature_439_residues
MNAPVSGAAEQVFARFLDLERQTRAAHDISQLAYSLVNDGQSLFGFRHAALLIAGKVQAVTGVSAVEPNAPFVAFVEQAV
AQLFKQDVLKQARVITPEMVGESIQADWRSLSAMQVFWLPLIDRQGQVFGGLWLARDLPWNPSEQVLLSQLGDTYSHAWL
ALQPRKPWRLRWTRKRQVALVAVLLLGLLIPVRQSVLAPAEVVPQGGRVVAAPLDGVIAEFLVKPNQSVKTGDLLLRFES
TTLKAQADVAERALGVAEAELKANSQRSFVDAESSSRVDLLAARAEQKRAERDYARELLNRSEVRAERDGIAVFADAERW
TGKPVQTGERLMEIADPSQAELRIELAVGDAISLEPGAEVALFLDSDPLQRHLATLERSAYEAQPTAGGQLAYRLDANFA
DAPPRIGLRGTAKIFGERAPLALYLLRRPLAGLRQSVGL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 48080; Mature: 48080

Theoretical pI: Translated: 6.99; Mature: 6.99

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
0.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
0.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNAPVSGAAEQVFARFLDLERQTRAAHDISQLAYSLVNDGQSLFGFRHAALLIAGKVQAV
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHH
TGVSAVEPNAPFVAFVEQAVAQLFKQDVLKQARVITPEMVGESIQADWRSLSAMQVFWLP
HCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
LIDRQGQVFGGLWLARDLPWNPSEQVLLSQLGDTYSHAWLALQPRKPWRLRWTRKRQVAL
HHCCCCCEEEEEEEECCCCCCCHHHHHHHHHCCHHHCEEEEECCCCCCEEEECHHHHHHH
VAVLLLGLLIPVRQSVLAPAEVVPQGGRVVAAPLDGVIAEFLVKPNQSVKTGDLLLRFES
HHHHHHHHHHHHHHHHCCCHHHCCCCCEEEECCHHHHHHHHHHCCCCCCCCCCEEEEEEC
TTLKAQADVAERALGVAEAELKANSQRSFVDAESSSRVDLLAARAEQKRAERDYARELLN
CHHHHHHHHHHHHHHHHHHHHHCCCCCCEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
RSEVRAERDGIAVFADAERWTGKPVQTGERLMEIADPSQAELRIELAVGDAISLEPGAEV
HHHHHHHCCCEEEEECCHHCCCCCHHHHHHHHHHCCCCCCEEEEEEEECCEEECCCCCCE
ALFLDSDPLQRHLATLERSAYEAQPTAGGQLAYRLDANFADAPPRIGLRGTAKIFGERAP
EEEECCCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCCCCCHHHHHCCCCC
LALYLLRRPLAGLRQSVGL
HHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MNAPVSGAAEQVFARFLDLERQTRAAHDISQLAYSLVNDGQSLFGFRHAALLIAGKVQAV
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHH
TGVSAVEPNAPFVAFVEQAVAQLFKQDVLKQARVITPEMVGESIQADWRSLSAMQVFWLP
HCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
LIDRQGQVFGGLWLARDLPWNPSEQVLLSQLGDTYSHAWLALQPRKPWRLRWTRKRQVAL
HHCCCCCEEEEEEEECCCCCCCHHHHHHHHHCCHHHCEEEEECCCCCCEEEECHHHHHHH
VAVLLLGLLIPVRQSVLAPAEVVPQGGRVVAAPLDGVIAEFLVKPNQSVKTGDLLLRFES
HHHHHHHHHHHHHHHHCCCHHHCCCCCEEEECCHHHHHHHHHHCCCCCCCCCCEEEEEEC
TTLKAQADVAERALGVAEAELKANSQRSFVDAESSSRVDLLAARAEQKRAERDYARELLN
CHHHHHHHHHHHHHHHHHHHHHCCCCCCEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
RSEVRAERDGIAVFADAERWTGKPVQTGERLMEIADPSQAELRIELAVGDAISLEPGAEV
HHHHHHHCCCEEEEECCHHCCCCCHHHHHHHHHHCCCCCCEEEEEEEECCEEECCCCCCE
ALFLDSDPLQRHLATLERSAYEAQPTAGGQLAYRLDANFADAPPRIGLRGTAKIFGERAP
EEEECCCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCCCCCHHHHHCCCCC
LALYLLRRPLAGLRQSVGL
HHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA