| Definition | Pseudomonas fluorescens Pf0-1 chromosome, complete genome. |
|---|---|
| Accession | NC_007492 |
| Length | 6,438,405 |
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The map label for this gene is foxA [H]
Identifier: 77456349
GI number: 77456349
Start: 128233
End: 130626
Strand: Reverse
Name: foxA [H]
Synonym: Pfl01_0121
Alternate gene names: 77456349
Gene position: 130626-128233 (Counterclockwise)
Preceding gene: 77456350
Following gene: 77456348
Centisome position: 2.03
GC content: 60.15
Gene sequence:
>2394_bases ATGTTGCCGGGCCTGAGCATGGCGGCCAATGCCAGCGAGGTCAGCAGCCACCGCTACAACATCGCCGCCGGGCCATTGGG CGAGGCGCTGAACCAGTTCGCACGCCAAGCCGGCATCACCTTGTCGATGACCCCACAGCAGACTCAAGGCCGACAATCAC CCGGCGTGCAGGGCGAGTATTCGACCGATCAGGCGCTGAGTCATCTGCTCGGTGGTTCGGGTCTGGAGGCGGTCAGCCAG GACGGCAGCAGCTATGTGTTGCGCTCCGTCGCAGAAACCGAAGCACTGGCCCTGCCGACCACCGACATCAAAGGCTTCGC CCTCGGCAACGCGCTGGGCAGCATGGATGGCTATAACGCGACGCACAGCCAGATCGCCACCAAGACCAGTACCGCGTTGC TGGAAACTTCGCAAAGCGTGTCCGTGGTCACCCGTGAGCAAATGGATGACCAGGGCTCGCAAACCGTGTCCCAAGCCATG CGTTACACCCCCGGCGTGCTGACCAATCCTTACGGCGCCACGCACCGTTACGACTACGTGGCAATGCGCGGCTTCAACGA CGGTTCGGTGGACAACATCTACCTCGACGGCCTCAAGTCGATGGGCGACAGCGGCACCTACAGCACGATGCAGGTCGATC CGTATTTCCTCGAGCGCGTCGATATTCTCAAAGGCCCGTCGTCGGTACTTTACGGCCGTAGCTCGCCGGGCGGTCTGGTG GCGCTGACCAGCAAGAAGCCGCTGTACGAGGCCTATCACCAGGTTCAGGCCACCGTCGGCACTCAGGGCCAGCGCGGTGT CGGTTTTGACTTCAGCGGACCGGTCGATGACGACAAGCGCATCGCCTATCGTCTGATCGGTTTGACGGATCAGTCCGACA CGCAATTCGACCACAACAAGGAAAAGCGCTTCGCCCTCGCGCCGACCGTCAGCATCGATTTCAACGAGGACACGTCGCTG ACGCTGCAAGCGTATCTGCAGCATGACCCGGATGGCGGCTACCACGGTGGCGTGCCGGCCGACGGTACGATTCATCAGCG CAACGGCAATCGCATTTCGCCGCATTTCTTCGAAGGCGAGCCGGGCATCGATGGCTACTCCCGTGATCAGCAGTCGTTCG GTTACCAGTTCGAACACCGCTTCAACGACGTCTTCACCGCGCGGCAGAATTTCCGCTACCTCGACTCCAAAGTGAACATG GATCAGGTGTACGCCTATGGCTGGACGTCGCCGACCAGTAACGAACTGAATCGCTACTACACCGGCGGTGACGAGCGTCT CCACGCGTTCATCGTCGACAACATGCTCCAGGCCGAATTTTTCACCGGAGCGACCAAGCACACAGTGTTGATGGGAGCGG ATTATCAGCGACGCAAAACCGTGGTCGACTGGACCAGTGGCGGCCTGGCGCCGATCAACGCGTTCAACCCGGAGTCTGGC AATTCCGCTATCACGCCTTACGGCGAGACCAGCTATTTGCGGCGCCTGGAGCAGACCGGCGTTTACCTGCAAGACCTGAT CGAGATGAACAAGTGGCGCTTCTCGCTGGGACTGCGTCAGGACTGGGTGGAAACCTCCGACGAAAACCGTATCGCCGAAG CGGGCCGTCCGGTCGGCACCGAGATCAATGATCGACGCACCAAGCTCACCGGCCGTGCCGGCGCGCTGTATCTGTTCGAT AACGGGCTCGCGCCGTACGTCAGCTATTCCGAGTCGTTCAACCCGAATTCCTACGCTGACAGCGCCGGCAATCCACTCGC ACCGACCGATGGAACGCAGTGGGAAATGGGCCTGAAGTATCAGCCGCCGGGTACTGACAATCTGTTCACCGCCTCGTTGT TCCGCATCGATCAGGAGAACCTGGCGACCAAACTGCCGCAGGAAAACTTCTATCGCGCTGTAGGCGCTGTCCGCTCTCAG GGTCTGGAACTGGAAGCGCACATGCAGCTGACCGACAACCTCAAAGTCCTCGGCAGCTACACCTTTACCGACATTGAATA CTCGAAGTCGATGACCAGCACCTTGAGCACACCGACCAATGTGATCGAGAACAAAGGCAACTCGCCAACCCAGGCGCCAC GGCACATGGCATCGCTGTGGGCCGACTACAAGTTCGACAGCGCGGCACTCGACGGGCTGCGACTGGGCGGTGGTGTACGT TATGTCGGCTATAGCTGGGCGGATGCAGAGAACACCATGAAGGTGCCGTCCTACACATTGTTCGACGCATCGATTGGCTA TGACCTCGGCAAGGTCGGTCTGAAGGGTGTCGACGTACGCCTGAATGCGAACAATCTGACCAACGAATCCTACGTAGCCT CCTGCGCCAGTCTGGACTTCTGCTACATGGGCGAAGAGCGCAACGTCGCCGCCACGGTCAGTTACCAGTTCTAA
Upstream 100 bases:
>100_bases GCGCGTTACCTGTAAGAACCCTCTGAATTTCTCTGCCGAATCCGGCCTGTTGCGCCACGCCGTTCGGGCGGCGCTGTTTT CTACCGTAATGGGTGTTGGC
Downstream 100 bases:
>100_bases GCCTTTGTCTTGTGCATAAAAAAGCCAGCCCCTGATTTCAGGGGCTGGCTTTGTCGTAACTGTGGGGAAATTTTCATGCG TTCGTTTCTGGTTTTATTGC
Product: TonB-dependent siderophore receptor
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 797; Mature: 797
Protein sequence:
>797_residues MLPGLSMAANASEVSSHRYNIAAGPLGEALNQFARQAGITLSMTPQQTQGRQSPGVQGEYSTDQALSHLLGGSGLEAVSQ DGSSYVLRSVAETEALALPTTDIKGFALGNALGSMDGYNATHSQIATKTSTALLETSQSVSVVTREQMDDQGSQTVSQAM RYTPGVLTNPYGATHRYDYVAMRGFNDGSVDNIYLDGLKSMGDSGTYSTMQVDPYFLERVDILKGPSSVLYGRSSPGGLV ALTSKKPLYEAYHQVQATVGTQGQRGVGFDFSGPVDDDKRIAYRLIGLTDQSDTQFDHNKEKRFALAPTVSIDFNEDTSL TLQAYLQHDPDGGYHGGVPADGTIHQRNGNRISPHFFEGEPGIDGYSRDQQSFGYQFEHRFNDVFTARQNFRYLDSKVNM DQVYAYGWTSPTSNELNRYYTGGDERLHAFIVDNMLQAEFFTGATKHTVLMGADYQRRKTVVDWTSGGLAPINAFNPESG NSAITPYGETSYLRRLEQTGVYLQDLIEMNKWRFSLGLRQDWVETSDENRIAEAGRPVGTEINDRRTKLTGRAGALYLFD NGLAPYVSYSESFNPNSYADSAGNPLAPTDGTQWEMGLKYQPPGTDNLFTASLFRIDQENLATKLPQENFYRAVGAVRSQ GLELEAHMQLTDNLKVLGSYTFTDIEYSKSMTSTLSTPTNVIENKGNSPTQAPRHMASLWADYKFDSAALDGLRLGGGVR YVGYSWADAENTMKVPSYTLFDASIGYDLGKVGLKGVDVRLNANNLTNESYVASCASLDFCYMGEERNVAATVSYQF
Sequences:
>Translated_797_residues MLPGLSMAANASEVSSHRYNIAAGPLGEALNQFARQAGITLSMTPQQTQGRQSPGVQGEYSTDQALSHLLGGSGLEAVSQ DGSSYVLRSVAETEALALPTTDIKGFALGNALGSMDGYNATHSQIATKTSTALLETSQSVSVVTREQMDDQGSQTVSQAM RYTPGVLTNPYGATHRYDYVAMRGFNDGSVDNIYLDGLKSMGDSGTYSTMQVDPYFLERVDILKGPSSVLYGRSSPGGLV ALTSKKPLYEAYHQVQATVGTQGQRGVGFDFSGPVDDDKRIAYRLIGLTDQSDTQFDHNKEKRFALAPTVSIDFNEDTSL TLQAYLQHDPDGGYHGGVPADGTIHQRNGNRISPHFFEGEPGIDGYSRDQQSFGYQFEHRFNDVFTARQNFRYLDSKVNM DQVYAYGWTSPTSNELNRYYTGGDERLHAFIVDNMLQAEFFTGATKHTVLMGADYQRRKTVVDWTSGGLAPINAFNPESG NSAITPYGETSYLRRLEQTGVYLQDLIEMNKWRFSLGLRQDWVETSDENRIAEAGRPVGTEINDRRTKLTGRAGALYLFD NGLAPYVSYSESFNPNSYADSAGNPLAPTDGTQWEMGLKYQPPGTDNLFTASLFRIDQENLATKLPQENFYRAVGAVRSQ GLELEAHMQLTDNLKVLGSYTFTDIEYSKSMTSTLSTPTNVIENKGNSPTQAPRHMASLWADYKFDSAALDGLRLGGGVR YVGYSWADAENTMKVPSYTLFDASIGYDLGKVGLKGVDVRLNANNLTNESYVASCASLDFCYMGEERNVAATVSYQF >Mature_797_residues MLPGLSMAANASEVSSHRYNIAAGPLGEALNQFARQAGITLSMTPQQTQGRQSPGVQGEYSTDQALSHLLGGSGLEAVSQ DGSSYVLRSVAETEALALPTTDIKGFALGNALGSMDGYNATHSQIATKTSTALLETSQSVSVVTREQMDDQGSQTVSQAM RYTPGVLTNPYGATHRYDYVAMRGFNDGSVDNIYLDGLKSMGDSGTYSTMQVDPYFLERVDILKGPSSVLYGRSSPGGLV ALTSKKPLYEAYHQVQATVGTQGQRGVGFDFSGPVDDDKRIAYRLIGLTDQSDTQFDHNKEKRFALAPTVSIDFNEDTSL TLQAYLQHDPDGGYHGGVPADGTIHQRNGNRISPHFFEGEPGIDGYSRDQQSFGYQFEHRFNDVFTARQNFRYLDSKVNM DQVYAYGWTSPTSNELNRYYTGGDERLHAFIVDNMLQAEFFTGATKHTVLMGADYQRRKTVVDWTSGGLAPINAFNPESG NSAITPYGETSYLRRLEQTGVYLQDLIEMNKWRFSLGLRQDWVETSDENRIAEAGRPVGTEINDRRTKLTGRAGALYLFD NGLAPYVSYSESFNPNSYADSAGNPLAPTDGTQWEMGLKYQPPGTDNLFTASLFRIDQENLATKLPQENFYRAVGAVRSQ GLELEAHMQLTDNLKVLGSYTFTDIEYSKSMTSTLSTPTNVIENKGNSPTQAPRHMASLWADYKFDSAALDGLRLGGGVR YVGYSWADAENTMKVPSYTLFDASIGYDLGKVGLKGVDVRLNANNLTNESYVASCASLDFCYMGEERNVAATVSYQF
Specific function: Ferrioxamine binding and uptake, in association with the tonB protein. May play a role in intestinal colonization [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell outer membrane [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the tonB-dependent receptor family [H]
Homologues:
Organism=Escherichia coli, GI1786344, Length=715, Percent_Identity=39.4405594405594, Blast_Score=472, Evalue=1e-134, Organism=Escherichia coli, GI1787024, Length=733, Percent_Identity=26.3301500682128, Blast_Score=171, Evalue=2e-43, Organism=Escherichia coli, GI1787344, Length=759, Percent_Identity=24.1106719367589, Blast_Score=125, Evalue=1e-29, Organism=Escherichia coli, GI1790743, Length=861, Percent_Identity=23.1126596980255, Blast_Score=101, Evalue=2e-22,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012910 - InterPro: IPR000531 - InterPro: IPR010105 [H]
Pfam domain/function: PF07715 Plug; PF00593 TonB_dep_Rec [H]
EC number: NA
Molecular weight: Translated: 87459; Mature: 87459
Theoretical pI: Translated: 4.80; Mature: 4.80
Prosite motif: PS00501 SPASE_I_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLPGLSMAANASEVSSHRYNIAAGPLGEALNQFARQAGITLSMTPQQTQGRQSPGVQGEY CCCCCCCCCCHHHHHCCCEEEECCCHHHHHHHHHHHHCCEEEECCCHHCCCCCCCCCCCC STDQALSHLLGGSGLEAVSQDGSSYVLRSVAETEALALPTTDIKGFALGNALGSMDGYNA CHHHHHHHHHCCCCCHHHHCCCHHHHHHHHHHHHEEECCCCCCCCEEHHHHHCCCCCCCC THSQIATKTSTALLETSQSVSVVTREQMDDQGSQTVSQAMRYTPGVLTNPYGATHRYDYV HHHHHHHHHHHHHHHCCCCCEEHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCCEEEE AMRGFNDGSVDNIYLDGLKSMGDSGTYSTMQVDPYFLERVDILKGPSSVLYGRSSPGGLV EEECCCCCCCCEEEECCHHHCCCCCCEEEEEECHHHHHHHHHHCCCCCEEECCCCCCCEE ALTSKKPLYEAYHQVQATVGTQGQRGVGFDFSGPVDDDKRIAYRLIGLTDQSDTQFDHNK EECCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCC EKRFALAPTVSIDFNEDTSLTLQAYLQHDPDGGYHGGVPADGTIHQRNGNRISPHFFEGE CCEEEECCEEEEECCCCCCEEEEEEEEECCCCCCCCCCCCCCEEECCCCCCCCCEEECCC PGIDGYSRDQQSFGYQFEHRFNDVFTARQNFRYLDSKVNMDQVYAYGWTSPTSNELNRYY CCCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCHHEE TGGDERLHAFIVDNMLQAEFFTGATKHTVLMGADYQRRKTVVDWTSGGLAPINAFNPESG CCCCCEEEEEEHHHHHHHHHHCCCCCEEEEECCCHHHCCEEEEECCCCCCCCCCCCCCCC NSAITPYGETSYLRRLEQTGVYLQDLIEMNKWRFSLGLRQDWVETSDENRIAEAGRPVGT CCCCCCCCCHHHHHHHHHCCHHHHHHHHHCCEEEECCCCHHHHCCCCCCHHHHCCCCCCC EINDRRTKLTGRAGALYLFDNGLAPYVSYSESFNPNSYADSAGNPLAPTDGTQWEMGLKY CCCCCCEEECCCCCEEEEEECCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCEEECEEE QPPGTDNLFTASLFRIDQENLATKLPQENFYRAVGAVRSQGLELEAHMQLTDNLKVLGSY CCCCCCCCEEHHHEEECHHHHHHHCCHHHHHHHHHHHHHCCCEEEEEEEECCCEEEEEEE TFTDIEYSKSMTSTLSTPTNVIENKGNSPTQAPRHMASLWADYKFDSAALDGLRLGGGVR EEEEEHHHHHHHHHHCCCHHHHHCCCCCCCHHHHHHHHHHHCCCCCHHHHCCEEECCCEE YVGYSWADAENTMKVPSYTLFDASIGYDLGKVGLKGVDVRLNANNLTNESYVASCASLDF EEEEEECCCCCCEECCCEEEEECCCCCCHHHCCCCEEEEEECCCCCCCHHHHHHHHCCEE CYMGEERNVAATVSYQF EEECCCCCEEEEEEECC >Mature Secondary Structure MLPGLSMAANASEVSSHRYNIAAGPLGEALNQFARQAGITLSMTPQQTQGRQSPGVQGEY CCCCCCCCCCHHHHHCCCEEEECCCHHHHHHHHHHHHCCEEEECCCHHCCCCCCCCCCCC STDQALSHLLGGSGLEAVSQDGSSYVLRSVAETEALALPTTDIKGFALGNALGSMDGYNA CHHHHHHHHHCCCCCHHHHCCCHHHHHHHHHHHHEEECCCCCCCCEEHHHHHCCCCCCCC THSQIATKTSTALLETSQSVSVVTREQMDDQGSQTVSQAMRYTPGVLTNPYGATHRYDYV HHHHHHHHHHHHHHHCCCCCEEHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCCEEEE AMRGFNDGSVDNIYLDGLKSMGDSGTYSTMQVDPYFLERVDILKGPSSVLYGRSSPGGLV EEECCCCCCCCEEEECCHHHCCCCCCEEEEEECHHHHHHHHHHCCCCCEEECCCCCCCEE ALTSKKPLYEAYHQVQATVGTQGQRGVGFDFSGPVDDDKRIAYRLIGLTDQSDTQFDHNK EECCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCC EKRFALAPTVSIDFNEDTSLTLQAYLQHDPDGGYHGGVPADGTIHQRNGNRISPHFFEGE CCEEEECCEEEEECCCCCCEEEEEEEEECCCCCCCCCCCCCCEEECCCCCCCCCEEECCC PGIDGYSRDQQSFGYQFEHRFNDVFTARQNFRYLDSKVNMDQVYAYGWTSPTSNELNRYY CCCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCHHEE TGGDERLHAFIVDNMLQAEFFTGATKHTVLMGADYQRRKTVVDWTSGGLAPINAFNPESG CCCCCEEEEEEHHHHHHHHHHCCCCCEEEEECCCHHHCCEEEEECCCCCCCCCCCCCCCC NSAITPYGETSYLRRLEQTGVYLQDLIEMNKWRFSLGLRQDWVETSDENRIAEAGRPVGT CCCCCCCCCHHHHHHHHHCCHHHHHHHHHCCEEEECCCCHHHHCCCCCCHHHHCCCCCCC EINDRRTKLTGRAGALYLFDNGLAPYVSYSESFNPNSYADSAGNPLAPTDGTQWEMGLKY CCCCCCEEECCCCCEEEEEECCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCEEECEEE QPPGTDNLFTASLFRIDQENLATKLPQENFYRAVGAVRSQGLELEAHMQLTDNLKVLGSY CCCCCCCCEEHHHEEECHHHHHHHCCHHHHHHHHHHHHHCCCEEEEEEEECCCEEEEEEE TFTDIEYSKSMTSTLSTPTNVIENKGNSPTQAPRHMASLWADYKFDSAALDGLRLGGGVR EEEEEHHHHHHHHHHCCCHHHHHCCCCCCCHHHHHHHHHHHCCCCCHHHHCCEEECCCEE YVGYSWADAENTMKVPSYTLFDASIGYDLGKVGLKGVDVRLNANNLTNESYVASCASLDF EEEEEECCCCCCEECCCEEEEECCCCCCHHHCCCCEEEEEECCCCCCCHHHHHHHHCCEE CYMGEERNVAATVSYQF EEECCCCCEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 11677609; 10103258; 7642488 [H]