| Definition | Pseudomonas fluorescens Pf0-1 chromosome, complete genome. |
|---|---|
| Accession | NC_007492 |
| Length | 6,438,405 |
Click here to switch to the map view.
The map label for this gene is 77456348
Identifier: 77456348
GI number: 77456348
Start: 126979
End: 128157
Strand: Reverse
Name: 77456348
Synonym: Pfl01_0120
Alternate gene names: NA
Gene position: 128157-126979 (Counterclockwise)
Preceding gene: 77456349
Following gene: 77456347
Centisome position: 1.99
GC content: 57.59
Gene sequence:
>1179_bases ATGCGTTCGTTTCTGGTTTTATTGCACCGGTATATCGGGTTGGCCACGGCGGTTTTTCTGCTGCTGGCGGGGATTACCGG CAGCATTCTGGCATTCAATCATGAGCTGGATGAGTGGTTGAATCCGGAGTTTTACGCGGCGTCGGCCGAGGGGGAGCGCC TAGCGCCAGGCGAGCTGGTTGATGCGCTGCAATCGGCACATCCGAAGTTGCAGGTCTGGTACATGGAGTACCCGAATGAG GCAGGCCACACGGCATTGCTCGCGGCGGTTGCGCGGAATGGTCCGGCGACCGGCGAACCGTTTGAAGAACGCAATCAAGT GTTCTATCTCGACCCGGTCAATGGCGAGCAAAAGGGCCAGCGTTACTGGGGCGAATGCTGTTTCCAGCGTGAGAACTTCG TTCCGTTCATTCTCGAGTTCCACTACAACCTGACACTGCCCGGCAACTGGGGTTTGCTGTTGATGGGGTTGGTGGCCATC GCCTGGGTAATCGATTGCTTCATCGCCCTCTGGCTGACGTTGCCGCGGGGTAAACCGTTCTGGAAGAAGTGGTCTATGGC CTGGAAGATCAAGGGCGGTCATGCCTATCGACTCAACTTCGATCTGCATCGGGCAGGGGGCTTGTGGCTGTGGTTGTTGT TGCTGCCGATCGCCGTCAGCAGCGTGGCGATGAACCTGCCGAGCCAGGTTTTCAAACCGGTGGTGTCGTTGTTTTCTCCG ATTGAACCGAGCGTGTATGAGGCGCGGGGGCGGATGCCTGCCGAAGAACTGGGGATCACCCGATTGAGTTATCAACAGGC ATACGAAAGGGCACAGCAGGAGGGGAAAAGGTTGGGGCTGACAGCGGCGATCGGCGAGTTGTATTACAGCTTTGAGTACA ACTTCTACGGAGCGGGGTTTGGAGAGCATGACACCGAGGCCCACGGTAAATCCTGGTTGTTCTTCCACGGTACTGACGGA CGATTACTGGGGCAGGAGATCGCAGGAGAAGGGACGTTGGGAGAGCGGTTTTATCGGTTGCAATTGCCGATACATGGGGG ACGGATCATAGGCTTCACCGGGCAAGTGATGATCGCGATATTGGGTGTTCTGATTGCGGGGTTGTCGGGGACTGGCGTCT ACATCTGGTGGCGCAAGTGGCAGGCTCGTCGGTGCAGCATGGCACGCAGAGCGGGTTGA
Upstream 100 bases:
>100_bases CGCCACGGTCAGTTACCAGTTCTAAGCCTTTGTCTTGTGCATAAAAAAGCCAGCCCCTGATTTCAGGGGCTGGCTTTGTC GTAACTGTGGGGAAATTTTC
Downstream 100 bases:
>100_bases AGATCGGACTTTTGTGGGCACTGAAACGACAAAACCCCTGTCTGCGTTAGCAGACAGGGGTTTCGGAATTCGATCTTGAC GATGACCTACTCTCACATGG
Product: PepSY-associated TM helix-containing protein
Products: NA
Alternate protein names: PepSY-Associated TM Helix; PepSY-Associated TM Helix Domain Protein; Iron-Regulated Membrane Protein; PepSY-Associated TM Helix Family; Transporter-Like Membrane Protein; Pepsy-Associated Tm Helix Domain Protein; Sulfite Reductase Flavoprotein Component
Number of amino acids: Translated: 392; Mature: 392
Protein sequence:
>392_residues MRSFLVLLHRYIGLATAVFLLLAGITGSILAFNHELDEWLNPEFYAASAEGERLAPGELVDALQSAHPKLQVWYMEYPNE AGHTALLAAVARNGPATGEPFEERNQVFYLDPVNGEQKGQRYWGECCFQRENFVPFILEFHYNLTLPGNWGLLLMGLVAI AWVIDCFIALWLTLPRGKPFWKKWSMAWKIKGGHAYRLNFDLHRAGGLWLWLLLLPIAVSSVAMNLPSQVFKPVVSLFSP IEPSVYEARGRMPAEELGITRLSYQQAYERAQQEGKRLGLTAAIGELYYSFEYNFYGAGFGEHDTEAHGKSWLFFHGTDG RLLGQEIAGEGTLGERFYRLQLPIHGGRIIGFTGQVMIAILGVLIAGLSGTGVYIWWRKWQARRCSMARRAG
Sequences:
>Translated_392_residues MRSFLVLLHRYIGLATAVFLLLAGITGSILAFNHELDEWLNPEFYAASAEGERLAPGELVDALQSAHPKLQVWYMEYPNE AGHTALLAAVARNGPATGEPFEERNQVFYLDPVNGEQKGQRYWGECCFQRENFVPFILEFHYNLTLPGNWGLLLMGLVAI AWVIDCFIALWLTLPRGKPFWKKWSMAWKIKGGHAYRLNFDLHRAGGLWLWLLLLPIAVSSVAMNLPSQVFKPVVSLFSP IEPSVYEARGRMPAEELGITRLSYQQAYERAQQEGKRLGLTAAIGELYYSFEYNFYGAGFGEHDTEAHGKSWLFFHGTDG RLLGQEIAGEGTLGERFYRLQLPIHGGRIIGFTGQVMIAILGVLIAGLSGTGVYIWWRKWQARRCSMARRAG >Mature_392_residues MRSFLVLLHRYIGLATAVFLLLAGITGSILAFNHELDEWLNPEFYAASAEGERLAPGELVDALQSAHPKLQVWYMEYPNE AGHTALLAAVARNGPATGEPFEERNQVFYLDPVNGEQKGQRYWGECCFQRENFVPFILEFHYNLTLPGNWGLLLMGLVAI AWVIDCFIALWLTLPRGKPFWKKWSMAWKIKGGHAYRLNFDLHRAGGLWLWLLLLPIAVSSVAMNLPSQVFKPVVSLFSP IEPSVYEARGRMPAEELGITRLSYQQAYERAQQEGKRLGLTAAIGELYYSFEYNFYGAGFGEHDTEAHGKSWLFFHGTDG RLLGQEIAGEGTLGERFYRLQLPIHGGRIIGFTGQVMIAILGVLIAGLSGTGVYIWWRKWQARRCSMARRAG
Specific function: Unknown
COG id: COG3182
COG function: function code S; Uncharacterized iron-regulated membrane protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 44193; Mature: 44193
Theoretical pI: Translated: 7.68; Mature: 7.68
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRSFLVLLHRYIGLATAVFLLLAGITGSILAFNHELDEWLNPEFYAASAEGERLAPGELV CHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCHHHHHCCCCEEEECCCCCCCCCHHHH DALQSAHPKLQVWYMEYPNEAGHTALLAAVARNGPATGEPFEERNQVFYLDPVNGEQKGQ HHHHHCCCCEEEEEEECCCCCCCHHHHHHHHHCCCCCCCCHHHCCCEEEEECCCCCHHHH RYWGECCFQRENFVPFILEFHYNLTLPGNWGLLLMGLVAIAWVIDCFIALWLTLPRGKPF HHHHHHHHCCCCCCEEEEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC WKKWSMAWKIKGGHAYRLNFDLHRAGGLWLWLLLLPIAVSSVAMNLPSQVFKPVVSLFSP HHCCCEEEEEECCEEEEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCC IEPSVYEARGRMPAEELGITRLSYQQAYERAQQEGKRLGLTAAIGELYYSFEYNFYGAGF CCCHHHHHHCCCCHHHHCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHEEEEEEEEECCC GEHDTEAHGKSWLFFHGTDGRLLGQEIAGEGTLGERFYRLQLPIHGGRIIGFTGQVMIAI CCCCCCCCCCEEEEEECCCCCEEHHHHCCCCCCCCEEEEEEEEECCCEEEEEHHHHHHHH LGVLIAGLSGTGVYIWWRKWQARRCSMARRAG HHHHHHCCCCCEEEEEEECHHHHHHHHHHHCC >Mature Secondary Structure MRSFLVLLHRYIGLATAVFLLLAGITGSILAFNHELDEWLNPEFYAASAEGERLAPGELV CHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCHHHHHCCCCEEEECCCCCCCCCHHHH DALQSAHPKLQVWYMEYPNEAGHTALLAAVARNGPATGEPFEERNQVFYLDPVNGEQKGQ HHHHHCCCCEEEEEEECCCCCCCHHHHHHHHHCCCCCCCCHHHCCCEEEEECCCCCHHHH RYWGECCFQRENFVPFILEFHYNLTLPGNWGLLLMGLVAIAWVIDCFIALWLTLPRGKPF HHHHHHHHCCCCCCEEEEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC WKKWSMAWKIKGGHAYRLNFDLHRAGGLWLWLLLLPIAVSSVAMNLPSQVFKPVVSLFSP HHCCCEEEEEECCEEEEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCC IEPSVYEARGRMPAEELGITRLSYQQAYERAQQEGKRLGLTAAIGELYYSFEYNFYGAGF CCCHHHHHHCCCCHHHHCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHEEEEEEEEECCC GEHDTEAHGKSWLFFHGTDGRLLGQEIAGEGTLGERFYRLQLPIHGGRIIGFTGQVMIAI CCCCCCCCCCEEEEEECCCCCEEHHHHCCCCCCCCEEEEEEEEECCCEEEEEHHHHHHHH LGVLIAGLSGTGVYIWWRKWQARRCSMARRAG HHHHHHCCCCCEEEEEEECHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA