| Definition | Burkholderia pseudomallei 1710b chromosome chromosome II, complete sequence. |
|---|---|
| Accession | NC_007435 |
| Length | 3,181,762 |
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The map label for this gene is hofQ [C]
Identifier: 76819084
GI number: 76819084
Start: 1621561
End: 1623633
Strand: Direct
Name: hofQ [C]
Synonym: BURPS1710b_A1312
Alternate gene names: 76819084
Gene position: 1621561-1623633 (Clockwise)
Preceding gene: 76817358
Following gene: 76818230
Centisome position: 50.96
GC content: 74.77
Gene sequence:
>2073_bases ATGGACACCAAACCGCAACTTTTCCGGCCGACGCCGGCGCGCTCGCGCGCCGTGCGCGGCGCGGCGCTCGCCGCCGCGTG CTGCGCCGGGCTCTTCACCGTCTTCGCCGCGGCCGCCCAGGACGCCGTCGAAAACGCCGCGATCGCGAAAGGCACGGCCG CCGCGCCGATGGCGCTCGGCCGCGCGCCGATGCAGATGACGATCAGCATGGCGCCCGCGCCCGCCGCCGGCGCCGCCGCA GCGGCCGCCGCCGTGCCGTTGCGCGGTCCGAGCTGCGTCGGCGAGATGCGCGAGTCGACGAGTGTGAGCGTGCCGCTCGG CAAATCGCTGCTCGTGCCGCTCGACGAGCCGGTGCGCAACCGCACGATCGGCAACCCCGCCGTCGCGCAGGCGACGATGG TGTCGCCGCGCACGCTCTACCTCGTCGGCATGTCCGTCGGCACGACGAACATGATCGTTCAGGGCAAGAGCGGCGCGTGC CGGATCATCGACGTCGCCGTCGGCGCGGACGCGGGCGGCCTGCAGGCGTCGCTGCGCCAGTTGATGCCGCGCGAGCGCGA CATCCGCGTGTCGACCGCGGCGGACACGATCGTGCTCGCGGGCAACGTGTCGAGCGCGCAGGCCGCGCAGCAGGCGGTCG CGATCGCGAAGGCGTACAGCAACCGCACGAACGCCGGCGCGGCCGGCAGCGGCGGCGGCGCGCGCGCCGACGTGCTGAAC ATGCTGACCGTCACGTCGCCGCAGCAGGTGATGCTCGAAGTGAAGGTCGCCGAGGTATCGAAGACGCTGATCAACCAGAT GGGATCGGCCGTCAACATCCAGGGCGGCTTCGGCTCGTGGACGGGCGCGCTCGTGACGAGCCTGCTCACGGGCGTGGGCA GCGGCATCGCGGCGAGCAAGTCGAACAAGCTGCCGTTGAACGGCTCGATCGACGCGCAGAACACCGATCAGCCGGTGAAG ATCCTCGCCGAGCCGCGGCTCGTCACGATCAGCGGCCAGGAAGCGACGTTCCTCGCCGGCGGCAAGATCTTCATTCCGGT GCCGCAGAGCAGCGGCATCGGCACGAACACGATCACGCTGCAGGAAGAGGAGTTCGGCGTCGGGCTGAAGTTCACGCCGA CCGTGCTGTCGAACGGCCGGATCAGCCTGAAGGTCGCGCCGGAGGTGTCCGAGCTGTCGCCGACGGGCGTCACGCTGTCC GCGGCGAACGTGGGCAACGTGTCGATCCTGCCGCTCATCACGACGCGGCGCGCATCGACGACCGTGCAGATGGGCGACGG CGAGACGTTCGCGATCGGCGGGCTCATCAAGGACAACGCGCAGGGCACGCTCAAGGCACTGCCCGGCATCGGCGAGCTGC CGGTGCTCGGCGCGCTGTTCCGCAGCACGTCGTTCCAGCAGGACCGCACCGAGCTCGTGTTCATCATCACGCCGCACCTG GTGCAGCCGCTCGAGACCGCCGACGTGCCGCTGCCGACCGACAGCTTCACGAAGCCGAACGAAGCCGACGTCTATGCGAC GGGCAACATGGAAGGCCGCGGCGGGCTGCGTCAGCACGGCGCCGCGCCGGCCGCGGCGCCCGCGAATGCCGCGCCCGGCG CCGCCGCGCCGACCGGTGCGGCGCCCGCCGCCGCCGTGCCTGCGCCTGCCGCGCCCGCGCCTGCCGCACCCGCGGCGCCC GCCGCCGCAGCCGCGCCCGCGAAGGACGCGGCTGCGAGCCCCGCGCCGGCGAAGCAGGCGCCCATCGCCGCGCAAGCGCC CGCGCCGCAGCCGGCGAAGCCCGCGGCGAGCGCGCCCGCGCCGGCGAACGCCCGCCCGCCGGCGACCGTGCAGGCGCCGC CGCCCGCACTGCCGTCCGCCGCCGCGCTCGCGCAGCGGCAAGGCGCGCACGCCGCCGCGCCGGACACGGCGCACGCCGGC CCAGCCGAGAGCGCGGCGGCAACCGCGTCGCCCGCGCCGGCCGCCGCGCTCGCGGCCCCGGCCGCCGCCGGCGCGACCGC GAAGCGCCAGGGCGCGCAGCCGCCGCAACAACTCGCCAACGCAGGCGCGATCGCGCCCGCCGCCGATCGCTGA
Upstream 100 bases:
>100_bases GCACTGACGATGCCTGGCGTTTGCGCTGCCCCTTTGCGTTCCGGCAGCTTTCGATAGTCAAACCCGGCGCGCCGCGCCGG GCACTGGGGGACCACACGAA
Downstream 100 bases:
>100_bases ACTTCATGCAAGGGGACGTTCATGAACCTCGACTACTTCACGCTGACGCGCCGCCTCGTGCTCGCCGCGTCGCTCGCCGC CTCGCTCGGCGGCTGCATGT
Product: phospholipid-binding domain-containing protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 690; Mature: 690
Protein sequence:
>690_residues MDTKPQLFRPTPARSRAVRGAALAAACCAGLFTVFAAAAQDAVENAAIAKGTAAAPMALGRAPMQMTISMAPAPAAGAAA AAAAVPLRGPSCVGEMRESTSVSVPLGKSLLVPLDEPVRNRTIGNPAVAQATMVSPRTLYLVGMSVGTTNMIVQGKSGAC RIIDVAVGADAGGLQASLRQLMPRERDIRVSTAADTIVLAGNVSSAQAAQQAVAIAKAYSNRTNAGAAGSGGGARADVLN MLTVTSPQQVMLEVKVAEVSKTLINQMGSAVNIQGGFGSWTGALVTSLLTGVGSGIAASKSNKLPLNGSIDAQNTDQPVK ILAEPRLVTISGQEATFLAGGKIFIPVPQSSGIGTNTITLQEEEFGVGLKFTPTVLSNGRISLKVAPEVSELSPTGVTLS AANVGNVSILPLITTRRASTTVQMGDGETFAIGGLIKDNAQGTLKALPGIGELPVLGALFRSTSFQQDRTELVFIITPHL VQPLETADVPLPTDSFTKPNEADVYATGNMEGRGGLRQHGAAPAAAPANAAPGAAAPTGAAPAAAVPAPAAPAPAAPAAP AAAAAPAKDAAASPAPAKQAPIAAQAPAPQPAKPAASAPAPANARPPATVQAPPPALPSAAALAQRQGAHAAAPDTAHAG PAESAAATASPAPAAALAAPAAAGATAKRQGAQPPQQLANAGAIAPAADR
Sequences:
>Translated_690_residues MDTKPQLFRPTPARSRAVRGAALAAACCAGLFTVFAAAAQDAVENAAIAKGTAAAPMALGRAPMQMTISMAPAPAAGAAA AAAAVPLRGPSCVGEMRESTSVSVPLGKSLLVPLDEPVRNRTIGNPAVAQATMVSPRTLYLVGMSVGTTNMIVQGKSGAC RIIDVAVGADAGGLQASLRQLMPRERDIRVSTAADTIVLAGNVSSAQAAQQAVAIAKAYSNRTNAGAAGSGGGARADVLN MLTVTSPQQVMLEVKVAEVSKTLINQMGSAVNIQGGFGSWTGALVTSLLTGVGSGIAASKSNKLPLNGSIDAQNTDQPVK ILAEPRLVTISGQEATFLAGGKIFIPVPQSSGIGTNTITLQEEEFGVGLKFTPTVLSNGRISLKVAPEVSELSPTGVTLS AANVGNVSILPLITTRRASTTVQMGDGETFAIGGLIKDNAQGTLKALPGIGELPVLGALFRSTSFQQDRTELVFIITPHL VQPLETADVPLPTDSFTKPNEADVYATGNMEGRGGLRQHGAAPAAAPANAAPGAAAPTGAAPAAAVPAPAAPAPAAPAAP AAAAAPAKDAAASPAPAKQAPIAAQAPAPQPAKPAASAPAPANARPPATVQAPPPALPSAAALAQRQGAHAAAPDTAHAG PAESAAATASPAPAAALAAPAAAGATAKRQGAQPPQQLANAGAIAPAADR >Mature_690_residues MDTKPQLFRPTPARSRAVRGAALAAACCAGLFTVFAAAAQDAVENAAIAKGTAAAPMALGRAPMQMTISMAPAPAAGAAA AAAAVPLRGPSCVGEMRESTSVSVPLGKSLLVPLDEPVRNRTIGNPAVAQATMVSPRTLYLVGMSVGTTNMIVQGKSGAC RIIDVAVGADAGGLQASLRQLMPRERDIRVSTAADTIVLAGNVSSAQAAQQAVAIAKAYSNRTNAGAAGSGGGARADVLN MLTVTSPQQVMLEVKVAEVSKTLINQMGSAVNIQGGFGSWTGALVTSLLTGVGSGIAASKSNKLPLNGSIDAQNTDQPVK ILAEPRLVTISGQEATFLAGGKIFIPVPQSSGIGTNTITLQEEEFGVGLKFTPTVLSNGRISLKVAPEVSELSPTGVTLS AANVGNVSILPLITTRRASTTVQMGDGETFAIGGLIKDNAQGTLKALPGIGELPVLGALFRSTSFQQDRTELVFIITPHL VQPLETADVPLPTDSFTKPNEADVYATGNMEGRGGLRQHGAAPAAAPANAAPGAAAPTGAAPAAAVPAPAAPAPAAPAAP AAAAAPAKDAAASPAPAKQAPIAAQAPAPQPAKPAASAPAPANARPPATVQAPPPALPSAAALAQRQGAHAAAPDTAHAG PAESAAATASPAPAAALAAPAAAGATAKRQGAQPPQQLANAGAIAPAADR
Specific function: Involved in the secretion of an unknown compound (Potential) [H]
COG id: COG4964
COG function: function code U; Flp pilus assembly protein, secretin CpaC
Gene ontology:
Cell location: Outer Membrane [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 BON domain [H]
Homologues:
Organism=Escherichia coli, GI1789793, Length=192, Percent_Identity=33.8541666666667, Blast_Score=79, Evalue=1e-15,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001775 - InterPro: IPR004846 - InterPro: IPR007055 [H]
Pfam domain/function: PF04972 BON; PF00263 Secretin [H]
EC number: NA
Molecular weight: Translated: 68050; Mature: 68050
Theoretical pI: Translated: 10.00; Mature: 10.00
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDTKPQLFRPTPARSRAVRGAALAAACCAGLFTVFAAAAQDAVENAAIAKGTAAAPMALG CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHC RAPMQMTISMAPAPAAGAAAAAAAVPLRGPSCVGEMRESTSVSVPLGKSLLVPLDEPVRN CCCEEEEEEECCCCCCCHHHHHHCCCCCCCHHHHHHHHCCEEECCCCCEEEEECCCCHHH RTIGNPAVAQATMVSPRTLYLVGMSVGTTNMIVQGKSGACRIIDVAVGADAGGLQASLRQ CCCCCCHHHHEEECCCCEEEEEEEEECCCEEEEECCCCCEEEEEEEECCCCCHHHHHHHH LMPRERDIRVSTAADTIVLAGNVSSAQAAQQAVAIAKAYSNRTNAGAAGSGGGARADVLN HCCCCCCEEEEECCCEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHH MLTVTSPQQVMLEVKVAEVSKTLINQMGSAVNIQGGFGSWTGALVTSLLTGVGSGIAASK HHHCCCCHHEEEEEHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHCCCCCCCCC SNKLPLNGSIDAQNTDQPVKILAEPRLVTISGQEATFLAGGKIFIPVPQSSGIGTNTITL CCCCCCCCCCCCCCCCCCEEEEECCEEEEEECCCEEEEECCEEEEECCCCCCCCCEEEEE QEEEFGVGLKFTPTVLSNGRISLKVAPEVSELSPTGVTLSAANVGNVSILPLITTRRAST EHHHHCCCEEECCCEECCCEEEEEECCCHHHCCCCCEEEEECCCCCEEEEEEEEECCCCE TVQMGDGETFAIGGLIKDNAQGTLKALPGIGELPVLGALFRSTSFQQDRTELVFIITPHL EEEECCCCEEEECCEEECCCCCHHHHCCCCCCCHHHHHHHHCCCCCCCCCCEEEEECCHH VQPLETADVPLPTDSFTKPNEADVYATGNMEGRGGLRQHGAAPAAAPANAAPGAAAPTGA HCCHHHCCCCCCCCCCCCCCCCEEEEECCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCC APAAAVPAPAAPAPAAPAAPAAAAAPAKDAAASPAPAKQAPIAAQAPAPQPAKPAASAPA CCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC PANARPPATVQAPPPALPSAAALAQRQGAHAAAPDTAHAGPAESAAATASPAPAAALAAP CCCCCCCCEECCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCC AAAGATAKRQGAQPPQQLANAGAIAPAADR HHCCCCHHHCCCCCHHHHHCCCCCCCCCCC >Mature Secondary Structure MDTKPQLFRPTPARSRAVRGAALAAACCAGLFTVFAAAAQDAVENAAIAKGTAAAPMALG CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHC RAPMQMTISMAPAPAAGAAAAAAAVPLRGPSCVGEMRESTSVSVPLGKSLLVPLDEPVRN CCCEEEEEEECCCCCCCHHHHHHCCCCCCCHHHHHHHHCCEEECCCCCEEEEECCCCHHH RTIGNPAVAQATMVSPRTLYLVGMSVGTTNMIVQGKSGACRIIDVAVGADAGGLQASLRQ CCCCCCHHHHEEECCCCEEEEEEEEECCCEEEEECCCCCEEEEEEEECCCCCHHHHHHHH LMPRERDIRVSTAADTIVLAGNVSSAQAAQQAVAIAKAYSNRTNAGAAGSGGGARADVLN HCCCCCCEEEEECCCEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHH MLTVTSPQQVMLEVKVAEVSKTLINQMGSAVNIQGGFGSWTGALVTSLLTGVGSGIAASK HHHCCCCHHEEEEEHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHCCCCCCCCC SNKLPLNGSIDAQNTDQPVKILAEPRLVTISGQEATFLAGGKIFIPVPQSSGIGTNTITL CCCCCCCCCCCCCCCCCCEEEEECCEEEEEECCCEEEEECCEEEEECCCCCCCCCEEEEE QEEEFGVGLKFTPTVLSNGRISLKVAPEVSELSPTGVTLSAANVGNVSILPLITTRRAST EHHHHCCCEEECCCEECCCEEEEEECCCHHHCCCCCEEEEECCCCCEEEEEEEEECCCCE TVQMGDGETFAIGGLIKDNAQGTLKALPGIGELPVLGALFRSTSFQQDRTELVFIITPHL EEEECCCCEEEECCEEECCCCCHHHHCCCCCCCHHHHHHHHCCCCCCCCCCEEEEECCHH VQPLETADVPLPTDSFTKPNEADVYATGNMEGRGGLRQHGAAPAAAPANAAPGAAAPTGA HCCHHHCCCCCCCCCCCCCCCCEEEEECCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCC APAAAVPAPAAPAPAAPAAPAAAAAPAKDAAASPAPAKQAPIAAQAPAPQPAKPAASAPA CCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC PANARPPATVQAPPPALPSAAALAQRQGAHAAAPDTAHAGPAESAAATASPAPAAALAAP CCCCCCCCEECCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCC AAAGATAKRQGAQPPQQLANAGAIAPAADR HHCCCCHHHCCCCCHHHHHCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9163424 [H]