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The map label for this gene is cdaR [H]

Identifier: 76819080

GI number: 76819080

Start: 2004189

End: 2005655

Strand: Direct

Name: cdaR [H]

Synonym: BURPS1710b_A1640

Alternate gene names: 76819080

Gene position: 2004189-2005655 (Clockwise)

Preceding gene: 76818303

Following gene: 76817263

Centisome position: 62.99

GC content: 71.78

Gene sequence:

>1467_bases
GTGCCGGCCCGCTTTGCCGGCCGCCTGGCGGACCGTTTCGCGGGCGGCTTCGCGCCCGCTTTGCAGATCGCTTCACAGGC
TGTTTCGCCGGCTGTTTCGCGGGCCATTTCGCGGACCATTTCGCAGGCTGCTCCGCTCGCCTGCTTCGTGATCTGTCGCG
GCCCGCGTCGCAGCCGGTTCCACGGCCCGCCCGCCGCCCGCGTGCGGACCCGTTCGCCGCCGTTTTCGCCATTCGACCCG
ACCGCCATGATGATCGATGCCCGTCTCGCGACCGAAATCGTTGTTCGCACCGTCGAGGTCATGCCGTTCGACGTGAACGT
GATGGACGCGCACGGCGTGATTCTCGCGAGCAGCGACGCGGCGCGCGTCGGCGAGATCCACGCGGGTGCGCAGCTCGCGC
TCGCCCGGGCGCGCGCGGTCGAGATAGACGCCGCGATGGCGGCGAACCTGAGCGGCGCGCGGCCCGGCATCAACCTGCCG
CTGAGCGTGCGCGGCAAGGTGTGCGGCGTGATCGGCGTCACCGGCGAGCCGGACGCGGTGCGCGGCTTCGGCGAGCTGCT
GCGGGTGACCGCGGAGCTGATCCTCGAGCGCGAGCAACTGACCGTCGAGTTGCGCCGCAACGCGCGCCATCGGGAAGAAT
TCGTCCTCCAACTGCTGAGGCGCACGGCCGCGGCCGCCGAGCTGGAGGCATGGGCCGACCGGCTCGGCATCGACATGCGG
CTCGCGCACGCGGCGATCGTGTGCCGCCTGAGCGGCGTCGACACGGAGCCGGAGGCGGGCGTCGGTCAGATCGAGGCGAT
GCAGTCGCAACTCGCGCAGGAGTGGCCGCAATTGCTGAGCGCGAAGACGTCGTATCGGGAGCTCGTGATGTTCGATGCGG
TCGATGCGCGCGCGGGGCGCGACGGCGTGCTCGCGACGCACGCGGGCAAGCGGCTCGCGGCGCTGGAGGGCACGTTGCGC
AAGGTCGCGACGCAGCCGTTCTCGCTCGCGCTCGGCATCGCGCTCGACGGCATCGACGGCTTCGAGCGCTCGTACCAGTG
CGCGCTCGCGACGCTGCGCGTCGGCGCGGCGCGCACGCCGCAACGGGCGGCGTATTCGTACTACGACTTCGTGCTGCCCG
TTCTGCTGTCGGCGCTGTCGCAGGGCTGGCAGGCGCGGCAATTGCGCTTGCCGCTCACGCGCCTGCTCGCGCGCGAGCGG
CGCTCCGGCGCGCTGCTCGACACGCTGAAGGCCTGGTACGCGCACGACGGCCACCCGAGCGCGACGGCGCAGGCGCTCGG
CATTCACCGCAACACGCTCGATTACCGGCTGCAGCAGATCCGCGACGCGACGGGCCTCGATCTCGGCGCGATCGACGATC
GGCTCTGGCTCTACATCGCGCTGCAAACGATGGCGGGCAGCGACGACGGCGATGACGACGGCCTCGACGGCGACGCCGGT
CTCGGCGACGAGCGCCCGGCGAGCTGA

Upstream 100 bases:

>100_bases
CGTCGTCGCCGCGGGCGTGCCGTTCGGCCATCCCGGCTCGACGAACCTGATGCGCATCGTCTGGCCGACCGAAATGACGC
GACAATAGCGTCGAGCCGGT

Downstream 100 bases:

>100_bases
AGCCTGGCGGCACGAGCCTGACGCGGCAAGCCTAACGCGTCGCACGCGGCGCTTGCGCAAGGGCGCATGGCCGCCGCGCG
GGCCCATGCGCCGGCGTGCG

Product: putative transcriptional regulator

Products: NA

Alternate protein names: Sugar diacid regulator [H]

Number of amino acids: Translated: 488; Mature: 487

Protein sequence:

>488_residues
MPARFAGRLADRFAGGFAPALQIASQAVSPAVSRAISRTISQAAPLACFVICRGPRRSRFHGPPAARVRTRSPPFSPFDP
TAMMIDARLATEIVVRTVEVMPFDVNVMDAHGVILASSDAARVGEIHAGAQLALARARAVEIDAAMAANLSGARPGINLP
LSVRGKVCGVIGVTGEPDAVRGFGELLRVTAELILEREQLTVELRRNARHREEFVLQLLRRTAAAAELEAWADRLGIDMR
LAHAAIVCRLSGVDTEPEAGVGQIEAMQSQLAQEWPQLLSAKTSYRELVMFDAVDARAGRDGVLATHAGKRLAALEGTLR
KVATQPFSLALGIALDGIDGFERSYQCALATLRVGAARTPQRAAYSYYDFVLPVLLSALSQGWQARQLRLPLTRLLARER
RSGALLDTLKAWYAHDGHPSATAQALGIHRNTLDYRLQQIRDATGLDLGAIDDRLWLYIALQTMAGSDDGDDDGLDGDAG
LGDERPAS

Sequences:

>Translated_488_residues
MPARFAGRLADRFAGGFAPALQIASQAVSPAVSRAISRTISQAAPLACFVICRGPRRSRFHGPPAARVRTRSPPFSPFDP
TAMMIDARLATEIVVRTVEVMPFDVNVMDAHGVILASSDAARVGEIHAGAQLALARARAVEIDAAMAANLSGARPGINLP
LSVRGKVCGVIGVTGEPDAVRGFGELLRVTAELILEREQLTVELRRNARHREEFVLQLLRRTAAAAELEAWADRLGIDMR
LAHAAIVCRLSGVDTEPEAGVGQIEAMQSQLAQEWPQLLSAKTSYRELVMFDAVDARAGRDGVLATHAGKRLAALEGTLR
KVATQPFSLALGIALDGIDGFERSYQCALATLRVGAARTPQRAAYSYYDFVLPVLLSALSQGWQARQLRLPLTRLLARER
RSGALLDTLKAWYAHDGHPSATAQALGIHRNTLDYRLQQIRDATGLDLGAIDDRLWLYIALQTMAGSDDGDDDGLDGDAG
LGDERPAS
>Mature_487_residues
PARFAGRLADRFAGGFAPALQIASQAVSPAVSRAISRTISQAAPLACFVICRGPRRSRFHGPPAARVRTRSPPFSPFDPT
AMMIDARLATEIVVRTVEVMPFDVNVMDAHGVILASSDAARVGEIHAGAQLALARARAVEIDAAMAANLSGARPGINLPL
SVRGKVCGVIGVTGEPDAVRGFGELLRVTAELILEREQLTVELRRNARHREEFVLQLLRRTAAAAELEAWADRLGIDMRL
AHAAIVCRLSGVDTEPEAGVGQIEAMQSQLAQEWPQLLSAKTSYRELVMFDAVDARAGRDGVLATHAGKRLAALEGTLRK
VATQPFSLALGIALDGIDGFERSYQCALATLRVGAARTPQRAAYSYYDFVLPVLLSALSQGWQARQLRLPLTRLLARERR
SGALLDTLKAWYAHDGHPSATAQALGIHRNTLDYRLQQIRDATGLDLGAIDDRLWLYIALQTMAGSDDGDDDGLDGDAGL
GDERPAS

Specific function: Seems to regulate the expression of the operons for the enzymes involved in D-galactarate, D-glucarate and D-glycerate utilization [H]

COG id: COG3835

COG function: function code KT; Sugar diacid utilization regulator

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CdaR family [H]

Homologues:

Organism=Escherichia coli, GI87081694, Length=378, Percent_Identity=40.2116402116402, Blast_Score=270, Evalue=1e-73,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008599 [H]

Pfam domain/function: PF05651 Diacid_rec [H]

EC number: NA

Molecular weight: Translated: 52514; Mature: 52383

Theoretical pI: Translated: 7.94; Mature: 7.94

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPARFAGRLADRFAGGFAPALQIASQAVSPAVSRAISRTISQAAPLACFVICRGPRRSRF
CCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCCC
HGPPAARVRTRSPPFSPFDPTAMMIDARLATEIVVRTVEVMPFDVNVMDAHGVILASSDA
CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHEEEEEEEEECCCEEEECCCC
ARVGEIHAGAQLALARARAVEIDAAMAANLSGARPGINLPLSVRGKVCGVIGVTGEPDAV
HHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEECCCEEEEEECCCCCHHH
RGFGELLRVTAELILEREQLTVELRRNARHREEFVLQLLRRTAAAAELEAWADRLGIDMR
HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
LAHAAIVCRLSGVDTEPEAGVGQIEAMQSQLAQEWPQLLSAKTSYRELVMFDAVDARAGR
HHHHHHHHEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHEEECHHCCCCC
DGVLATHAGKRLAALEGTLRKVATQPFSLALGIALDGIDGFERSYQCALATLRVGAARTP
CCEEEECCCCHHHHHHHHHHHHHCCCHHEEEEEEECCCCHHHHHHHHHHHHHHHCCCCCC
QRAAYSYYDFVLPVLLSALSQGWQARQLRLPLTRLLARERRSGALLDTLKAWYAHDGHPS
HHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCHHHHHHHHHHCCHHHHHHHHHHCCCCCCC
ATAQALGIHRNTLDYRLQQIRDATGLDLGAIDDRLWLYIALQTMAGSDDGDDDGLDGDAG
HHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEHHCCCCCCCCCCCCCCCC
LGDERPAS
CCCCCCCC
>Mature Secondary Structure 
PARFAGRLADRFAGGFAPALQIASQAVSPAVSRAISRTISQAAPLACFVICRGPRRSRF
CCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCCC
HGPPAARVRTRSPPFSPFDPTAMMIDARLATEIVVRTVEVMPFDVNVMDAHGVILASSDA
CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHEEEEEEEEECCCEEEECCCC
ARVGEIHAGAQLALARARAVEIDAAMAANLSGARPGINLPLSVRGKVCGVIGVTGEPDAV
HHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEECCCEEEEEECCCCCHHH
RGFGELLRVTAELILEREQLTVELRRNARHREEFVLQLLRRTAAAAELEAWADRLGIDMR
HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
LAHAAIVCRLSGVDTEPEAGVGQIEAMQSQLAQEWPQLLSAKTSYRELVMFDAVDARAGR
HHHHHHHHEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHEEECHHCCCCC
DGVLATHAGKRLAALEGTLRKVATQPFSLALGIALDGIDGFERSYQCALATLRVGAARTP
CCEEEECCCCHHHHHHHHHHHHHCCCHHEEEEEEECCCCHHHHHHHHHHHHHHHCCCCCC
QRAAYSYYDFVLPVLLSALSQGWQARQLRLPLTRLLARERRSGALLDTLKAWYAHDGHPS
HHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCHHHHHHHHHHCCHHHHHHHHHHCCCCCCC
ATAQALGIHRNTLDYRLQQIRDATGLDLGAIDDRLWLYIALQTMAGSDDGDDDGLDGDAG
HHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEHHCCCCCCCCCCCCCCCC
LGDERPAS
CCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8202364; 9278503; 10762278 [H]