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The map label for this gene is yscR [C]

Identifier: 76818756

GI number: 76818756

Start: 599020

End: 599670

Strand: Direct

Name: yscR [C]

Synonym: BURPS1710b_A0430

Alternate gene names: 76818756

Gene position: 599020-599670 (Clockwise)

Preceding gene: 76819487

Following gene: 76818013

Centisome position: 18.83

GC content: 57.14

Gene sequence:

>651_bases
ATGGTACAGTTCAGTGACATCACCGGGCTGCTGCTCGTTGTCATCGCAATCAGCTTGTTGCCGTTCATTGCGATGGTCGT
GACGTCGTATGCGAAGATCGTCGTCGTGCTGGGGCTTCTGCGCAACGCGCTCGGCGTGCAACAGGTTCCGCCCAATATGG
TTCTCAACGGGATCGCGATTCTGGTATCGCTCTACGTGATGGCACCTATCGGCATGCAGGCGGCGAAGGCGCTCGACGAA
CAACAGCTCGCCTCGCAGTCCTCCCAGGCCATCATCCAAGCGCTCGGTTCAGCACGCGAACCGTTCCGATCGTTTCTCGA
GAAACACACTCCCGAACGCGAAAAACGCTTCTTTATTCGTTCCGCTTCCGTCATCTGGCCGAAGGAAGAAGCATCGCTTC
TGAACGAGCGCGACCTCATCGTTCTCGCACCGGCGTTCGCGCTATCGGAGTTGACCGACGCGTTCAAGATCGGCTTTCTG
CTGTACATCGTGTTCATCATCGTCGATCTGGTGATCGCCAATGTGCTCCTGGCGCTGGGGCTCAACCAGATCACGCCGAC
CAACGTCGCCATACCATTCAAGCTGCTGCTGTTCGTTGCCATGGACGGTTGGTCCACGCTCATCCACGGCCTGGTCATGA
CTTACAAATGA

Upstream 100 bases:

>100_bases
CGGTTGCGGCTCGTCGTCCATGGTCAGACCGTCGGCTATGGGGAGCTCGTGGCTGTCGGCGAGCATCTCGGCGTTCGCAT
CATTCGAATGGCTCATCGAC

Downstream 100 bases:

>100_bases
GCGCGATAGACCGTCAAACGCCATGGAAATCGACTCGCTGATCCGTTTCTGCACGCAGGCCATGCTGCTCTGCCTGAGCG
TCTCGCTGCCGCCCGTGATC

Product: type III secretion system protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 216; Mature: 216

Protein sequence:

>216_residues
MVQFSDITGLLLVVIAISLLPFIAMVVTSYAKIVVVLGLLRNALGVQQVPPNMVLNGIAILVSLYVMAPIGMQAAKALDE
QQLASQSSQAIIQALGSAREPFRSFLEKHTPEREKRFFIRSASVIWPKEEASLLNERDLIVLAPAFALSELTDAFKIGFL
LYIVFIIVDLVIANVLLALGLNQITPTNVAIPFKLLLFVAMDGWSTLIHGLVMTYK

Sequences:

>Translated_216_residues
MVQFSDITGLLLVVIAISLLPFIAMVVTSYAKIVVVLGLLRNALGVQQVPPNMVLNGIAILVSLYVMAPIGMQAAKALDE
QQLASQSSQAIIQALGSAREPFRSFLEKHTPEREKRFFIRSASVIWPKEEASLLNERDLIVLAPAFALSELTDAFKIGFL
LYIVFIIVDLVIANVLLALGLNQITPTNVAIPFKLLLFVAMDGWSTLIHGLVMTYK
>Mature_216_residues
MVQFSDITGLLLVVIAISLLPFIAMVVTSYAKIVVVLGLLRNALGVQQVPPNMVLNGIAILVSLYVMAPIGMQAAKALDE
QQLASQSSQAIIQALGSAREPFRSFLEKHTPEREKRFFIRSASVIWPKEEASLLNERDLIVLAPAFALSELTDAFKIGFL
LYIVFIIVDLVIANVLLALGLNQITPTNVAIPFKLLLFVAMDGWSTLIHGLVMTYK

Specific function: Important for pathogenicity [H]

COG id: COG4790

COG function: function code U; Type III secretory pathway, component EscR

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fliP/mopC/spaP family [H]

Homologues:

Organism=Escherichia coli, GI1788259, Length=209, Percent_Identity=37.3205741626794, Blast_Score=144, Evalue=6e-36,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005838
- InterPro:   IPR005773 [H]

Pfam domain/function: PF00813 FliP [H]

EC number: NA

Molecular weight: Translated: 23663; Mature: 23663

Theoretical pI: Translated: 7.67; Mature: 7.67

Prosite motif: PS01060 FLIP_1 ; PS01061 FLIP_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVQFSDITGLLLVVIAISLLPFIAMVVTSYAKIVVVLGLLRNALGVQQVPPNMVLNGIAI
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
LVSLYVMAPIGMQAAKALDEQQLASQSSQAIIQALGSAREPFRSFLEKHTPEREKRFFIR
HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHH
SASVIWPKEEASLLNERDLIVLAPAFALSELTDAFKIGFLLYIVFIIVDLVIANVLLALG
HCCCCCCCHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
LNQITPTNVAIPFKLLLFVAMDGWSTLIHGLVMTYK
CCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHCC
>Mature Secondary Structure
MVQFSDITGLLLVVIAISLLPFIAMVVTSYAKIVVVLGLLRNALGVQQVPPNMVLNGIAI
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
LVSLYVMAPIGMQAAKALDEQQLASQSSQAIIQALGSAREPFRSFLEKHTPEREKRFFIR
HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHH
SASVIWPKEEASLLNERDLIVLAPAFALSELTDAFKIGFLLYIVFIIVDLVIANVLLALG
HCCCCCCCHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
LNQITPTNVAIPFKLLLFVAMDGWSTLIHGLVMTYK
CCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 1312532 [H]