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The map label for this gene is sctS [H]

Identifier: 76818013

GI number: 76818013

Start: 599693

End: 599956

Strand: Direct

Name: sctS [H]

Synonym: BURPS1710b_A0431

Alternate gene names: 76818013

Gene position: 599693-599956 (Clockwise)

Preceding gene: 76818756

Following gene: 76817282

Centisome position: 18.85

GC content: 61.74

Gene sequence:

>264_bases
ATGGAAATCGACTCGCTGATCCGTTTCTGCACGCAGGCCATGCTGCTCTGCCTGAGCGTCTCGCTGCCGCCCGTGATCGT
GGCGGCTCTGGTCGGGCTTGGCGTATCGTTCGTGCAGGCGATCACGTCGCTGCAGGATCAGACCTTGCCGCAAGTGCTCA
AGCTGATCGCGGTCACGATCACGATCATGGTTGCCGCGCCGACCGGCTGTGCGGCGATCCTGCATTTCGCGAATCAGATG
ATGCAGCTTGCCGTCCCGCAATGA

Upstream 100 bases:

>100_bases
CCATTCAAGCTGCTGCTGTTCGTTGCCATGGACGGTTGGTCCACGCTCATCCACGGCCTGGTCATGACTTACAAATGAGC
GCGATAGACCGTCAAACGCC

Downstream 100 bases:

>100_bases
ATGCATGCCTGCACGAAAATCCTCCGAGGAGGCTTGCGTGAATCGCTCATTTCGTTCTTCCAATCATTTGTCCTCGCCGG
CCCAGCTGCAACAGTCCGCA

Product: type III secretion inner membrane protein SctS

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 87; Mature: 87

Protein sequence:

>87_residues
MEIDSLIRFCTQAMLLCLSVSLPPVIVAALVGLGVSFVQAITSLQDQTLPQVLKLIAVTITIMVAAPTGCAAILHFANQM
MQLAVPQ

Sequences:

>Translated_87_residues
MEIDSLIRFCTQAMLLCLSVSLPPVIVAALVGLGVSFVQAITSLQDQTLPQVLKLIAVTITIMVAAPTGCAAILHFANQM
MQLAVPQ
>Mature_87_residues
MEIDSLIRFCTQAMLLCLSVSLPPVIVAALVGLGVSFVQAITSLQDQTLPQVLKLIAVTITIMVAAPTGCAAILHFANQM
MQLAVPQ

Specific function: Component of the Yop secretion machinery [H]

COG id: COG4794

COG function: function code U; Type III secretory pathway, component EscS

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the FliQ/MopD/SpaQ family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002191
- InterPro:   IPR006306 [H]

Pfam domain/function: PF01313 Bac_export_3 [H]

EC number: NA

Molecular weight: Translated: 9193; Mature: 9193

Theoretical pI: Translated: 5.52; Mature: 5.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.4 %Cys     (Translated Protein)
5.7 %Met     (Translated Protein)
9.2 %Cys+Met (Translated Protein)
3.4 %Cys     (Mature Protein)
5.7 %Met     (Mature Protein)
9.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEIDSLIRFCTQAMLLCLSVSLPPVIVAALVGLGVSFVQAITSLQDQTLPQVLKLIAVTI
CCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TIMVAAPTGCAAILHFANQMMQLAVPQ
HHHHHCCHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MEIDSLIRFCTQAMLLCLSVSLPPVIVAALVGLGVSFVQAITSLQDQTLPQVLKLIAVTI
CCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TIMVAAPTGCAAILHFANQMMQLAVPQ
HHHHHCCHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8300512; 9746557; 9748454; 11586360 [H]