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The map label for this gene is omp38

Identifier: 76818322

GI number: 76818322

Start: 988464

End: 989756

Strand: Direct

Name: omp38

Synonym: BURPS1710b_A0745

Alternate gene names: NA

Gene position: 988464-989756 (Clockwise)

Preceding gene: 76817269

Following gene: 76817779

Centisome position: 31.07

GC content: 63.11

Gene sequence:

>1293_bases
GTGGTTGATATAAAACGACTTTCCATCGCTGTCACCTTTTTGAGACACTTTATTTTTTTGGATTTCTTGCGTCTGGTGCA
GTGCGCTATTCTCCAATCCGCAACAAATAACGAATCACTCGCGTGGAGAAATAACTCGATGAAGAAACTCGCTCTGTCTA
CCCTCTCGCTCGCGCTGCTGGGCGCAGCCGGTGCAGCTCAGGCTCAAAGCAGCGTCACGCTGTACGGCGTGATTGATACG
TCGATCACTTATGTCCACGGCAACGACGGCAAGGCCAACAACGCCTGGCTGATGGGCAGCGGCAACCTGCAAGGCAGCCG
CTGGGGCCTGAAGGGCACCGAGGATCTCGGCGCCGGCCTGAAGGCGATCTTCCAGTTGGAAAATGGCTTCAACTCGAACG
ACGGCACGCTCGGCCAAGGCAAGCGCATGTTCGGCCGCCAGGCGTTCGTCGGTCTGCAGCATGACCAGTACGGCACGCTG
ACGCTCGGCCGTCAGTACGATCCGCTCGTCGACCTCGTGCAACCGGTGACGGCCGACAACTACTTCGGCAGCCTGTTCGC
CACCCCGGGTGACGTCGACAACAACGACAACAGCCTGCGCGTGAACAACACGGTCAAGTACACGTCGCCCGTGTTCGCCG
GCTTCCAGTTCGAAGCCCTGTACGGCTTCAGCGGCATCGCGGGCTCGCCGGGCCAAGGCCAGACGTGGTCGGCCGCCGCC
GCATACAACAACGGCCCGATCGGCGTCGCGGCCGGCTACTTCTACACGTCGAACCCGTCGCCGACGGCCGGCTCGCGCTC
GACGTGGAGCGGCTCGTCCGACGCGATCTTCGACGGCGCGATCAACAGCGGCTACACGAGCGCGAAGTCGATCGGCATCG
CACAGGTGGCCGGCCAGTACGTGTTCGGCCCGGTCACGGTCGGCCTCGGCTACAGCAACGCGCAATACAAGCCGGACGGC
TTCTCGGGCTTCTCGTCGACCGAGAAGTACAACACGGGCCGCGGCTTCGTGACGTACCAGGCCACGCCGGCGCTGCTGCT
CGGCCTCGGCTACGCATACACGAAGGCGAGCGGCGACACGGACGCGAAGTACCACCAAGTGTCGATCGGCGCGGACTACG
CGCTGTCCAAGCGCACGGACGTCTACCTCGCCGGTGCGTACCAGCACGCGAGCGGCACGCAGCGCGTCGATGCGACGACG
ACGCAAACGGCGCAGGCATCGATCGGCTCGTACGGCGTGAACGGTACGAAGTCGCAAGAGATGGTGGCTCTGGGCCTGCG
CCACAAGTTCTAA

Upstream 100 bases:

>100_bases
CTGCCCAAAATCGCGAGCCCCCACGCCCGGGACACCTATTGTCGCAACAATCGCAACGCAACAATCGGCCAACGTTCCCC
GAATCGAAACAGTCGTTTAT

Downstream 100 bases:

>100_bases
GCGCAGCCGCGACGCGCAGTGCGGCGGCGTCTCCCGACGCCGCGAGCCGCAGTTGCCAAGCCAGCCTGACGCGTATGCGG
ACGGCTGGCTTTTTTCATTG

Product: outer membrane porin

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 430; Mature: 430

Protein sequence:

>430_residues
MVDIKRLSIAVTFLRHFIFLDFLRLVQCAILQSATNNESLAWRNNSMKKLALSTLSLALLGAAGAAQAQSSVTLYGVIDT
SITYVHGNDGKANNAWLMGSGNLQGSRWGLKGTEDLGAGLKAIFQLENGFNSNDGTLGQGKRMFGRQAFVGLQHDQYGTL
TLGRQYDPLVDLVQPVTADNYFGSLFATPGDVDNNDNSLRVNNTVKYTSPVFAGFQFEALYGFSGIAGSPGQGQTWSAAA
AYNNGPIGVAAGYFYTSNPSPTAGSRSTWSGSSDAIFDGAINSGYTSAKSIGIAQVAGQYVFGPVTVGLGYSNAQYKPDG
FSGFSSTEKYNTGRGFVTYQATPALLLGLGYAYTKASGDTDAKYHQVSIGADYALSKRTDVYLAGAYQHASGTQRVDATT
TQTAQASIGSYGVNGTKSQEMVALGLRHKF

Sequences:

>Translated_430_residues
MVDIKRLSIAVTFLRHFIFLDFLRLVQCAILQSATNNESLAWRNNSMKKLALSTLSLALLGAAGAAQAQSSVTLYGVIDT
SITYVHGNDGKANNAWLMGSGNLQGSRWGLKGTEDLGAGLKAIFQLENGFNSNDGTLGQGKRMFGRQAFVGLQHDQYGTL
TLGRQYDPLVDLVQPVTADNYFGSLFATPGDVDNNDNSLRVNNTVKYTSPVFAGFQFEALYGFSGIAGSPGQGQTWSAAA
AYNNGPIGVAAGYFYTSNPSPTAGSRSTWSGSSDAIFDGAINSGYTSAKSIGIAQVAGQYVFGPVTVGLGYSNAQYKPDG
FSGFSSTEKYNTGRGFVTYQATPALLLGLGYAYTKASGDTDAKYHQVSIGADYALSKRTDVYLAGAYQHASGTQRVDATT
TQTAQASIGSYGVNGTKSQEMVALGLRHKF
>Mature_430_residues
MVDIKRLSIAVTFLRHFIFLDFLRLVQCAILQSATNNESLAWRNNSMKKLALSTLSLALLGAAGAAQAQSSVTLYGVIDT
SITYVHGNDGKANNAWLMGSGNLQGSRWGLKGTEDLGAGLKAIFQLENGFNSNDGTLGQGKRMFGRQAFVGLQHDQYGTL
TLGRQYDPLVDLVQPVTADNYFGSLFATPGDVDNNDNSLRVNNTVKYTSPVFAGFQFEALYGFSGIAGSPGQGQTWSAAA
AYNNGPIGVAAGYFYTSNPSPTAGSRSTWSGSSDAIFDGAINSGYTSAKSIGIAQVAGQYVFGPVTVGLGYSNAQYKPDG
FSGFSSTEKYNTGRGFVTYQATPALLLGLGYAYTKASGDTDAKYHQVSIGADYALSKRTDVYLAGAYQHASGTQRVDATT
TQTAQASIGSYGVNGTKSQEMVALGLRHKF

Specific function: Forms anion selective channels [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: To bacterial outer membrane proteins and porins [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001702
- InterPro:   IPR002299 [H]

Pfam domain/function: PF00267 Porin_1 [H]

EC number: NA

Molecular weight: Translated: 45515; Mature: 45515

Theoretical pI: Translated: 8.92; Mature: 8.92

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVDIKRLSIAVTFLRHFIFLDFLRLVQCAILQSATNNESLAWRNNSMKKLALSTLSLALL
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHHHH
GAAGAAQAQSSVTLYGVIDTSITYVHGNDGKANNAWLMGSGNLQGSRWGLKGTEDLGAGL
CCCCCCCCCCCEEEEEEEECEEEEEECCCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHH
KAIFQLENGFNSNDGTLGQGKRMFGRQAFVGLQHDQYGTLTLGRQYDPLVDLVQPVTADN
HHHHHHHCCCCCCCCCCCCCHHHHCCHHEEEECCCCCCEEEECCCCCHHHHHHCCCCCCC
YFGSLFATPGDVDNNDNSLRVNNTVKYTSPVFAGFQFEALYGFSGIAGSPGQGQTWSAAA
CCCEEECCCCCCCCCCCCEEECCEEEECCCEECCEEEEEEECCCCCCCCCCCCCCEEEEE
AYNNGPIGVAAGYFYTSNPSPTAGSRSTWSGSSDAIFDGAINSGYTSAKSIGIAQVAGQY
ECCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCEEECCCCCCCCHHHHCCHHHHCCCE
VFGPVTVGLGYSNAQYKPDGFSGFSSTEKYNTGRGFVTYQATPALLLGLGYAYTKASGDT
EEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHCCHHEEECCCCC
DAKYHQVSIGADYALSKRTDVYLAGAYQHASGTQRVDATTTQTAQASIGSYGVNGTKSQE
CCEEEEEEECCCEEECCCCEEEEEEEEECCCCCCEECCCCCHHHHHHCCCCCCCCCCCCH
MVALGLRHKF
HEEECCCCCC
>Mature Secondary Structure
MVDIKRLSIAVTFLRHFIFLDFLRLVQCAILQSATNNESLAWRNNSMKKLALSTLSLALL
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHHHH
GAAGAAQAQSSVTLYGVIDTSITYVHGNDGKANNAWLMGSGNLQGSRWGLKGTEDLGAGL
CCCCCCCCCCCEEEEEEEECEEEEEECCCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHH
KAIFQLENGFNSNDGTLGQGKRMFGRQAFVGLQHDQYGTLTLGRQYDPLVDLVQPVTADN
HHHHHHHCCCCCCCCCCCCCHHHHCCHHEEEECCCCCCEEEECCCCCHHHHHHCCCCCCC
YFGSLFATPGDVDNNDNSLRVNNTVKYTSPVFAGFQFEALYGFSGIAGSPGQGQTWSAAA
CCCEEECCCCCCCCCCCCEEECCEEEECCCEECCEEEEEEECCCCCCCCCCCCCCEEEEE
AYNNGPIGVAAGYFYTSNPSPTAGSRSTWSGSSDAIFDGAINSGYTSAKSIGIAQVAGQY
ECCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCEEECCCCCCCCHHHHCCHHHHCCCE
VFGPVTVGLGYSNAQYKPDGFSGFSSTEKYNTGRGFVTYQATPALLLGLGYAYTKASGDT
EEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHCCHHEEECCCCC
DAKYHQVSIGADYALSKRTDVYLAGAYQHASGTQRVDATTTQTAQASIGSYGVNGTKSQE
CCEEEEEEECCCEEECCCCEEEEEEEEECCCCCCEECCCCCHHHHHHCCCCCCCCCCCCH
MVALGLRHKF
HEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1658537; 12910271 [H]