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The map label for this gene is ybfI [H]

Identifier: 76817453

GI number: 76817453

Start: 1146431

End: 1147381

Strand: Direct

Name: ybfI [H]

Synonym: BURPS1710b_A0886

Alternate gene names: 76817453

Gene position: 1146431-1147381 (Clockwise)

Preceding gene: 76818561

Following gene: 76819775

Centisome position: 36.03

GC content: 63.72

Gene sequence:

>951_bases
ATGTCTCCGAAACGAGGTCGACTTGGTTTACCATCGAAGCTCCAGCGCGCCATCTTTTTTGAATGGGTAGCTTATGGAAG
CGTCAGGGAGGCTGTCTTGAACGATTGTGCACGCGACATCGCGCCCGACCGAGATCAAATTCGGATCGGATCCGGCGCCC
CAGGCATCGAACGCGTGGAGGCGCACTTCCTCGATCATGCGTTCACGCCGCATCGTCACGACACGTACGCGATCGGCATC
ACGCTCTCGGGCTTGCAAACCTTCGGCTATCTCGGCGAAATCCACCACTGCCTGCCGGGACAGTGCCATATCCTGCACCC
CGACGAGTTGCACGACGGCCGCGCGGGAACCGACGAAGGCTTCGGTTACCGAATCATCTACGTCGATCCCGCGCTCGTCC
AGGAAGCGCTCGGCGGCCGCATGCTGCCGTTCGTTCGCTCACCGATCTTCCAGGCACCCGCCGTTTCCGAGGCGCTCGCG
GCCGGCATCTGGAACCTGGACGAGGAAATCGACAACGTATCGCGCATCGACATCGCCGTCGCCGTCGCGAACCTGCTGAC
GGCCGCCGCCGCGAAGGGCAGCGCGCCGAAAGCCGGCCCGCTCGCGATGGTCGAATTGACACGTATCCGCGATATCATCG
CCTCCTGTCCGCGCGAGCCGATCTCGATGGACGCGCTCGAGCACGCATCGGGACTCGACCGCTGGACGATCGCCCGCCAG
TTCCGACGGCTGTTCGGCACGAGCCCGAGCCGCTTTCGCACGCAGCGACAGCTCAATCTCGTGCGTCGGCTATTGATGGA
AGGCGAATCGCTGTCGACCGCCTCCACCGACGCGGGCTTTTCCGATCAGAGCCACATGTCGCGGCACTTCAAGAGTACTT
ACGGCATCACGCCGGGTGCGTGGATTTCCGCCGTGCGCACCCGGCACGCGCAGCACCCGTCGGACCACTAA

Upstream 100 bases:

>100_bases
ACTCCGTAGGACGCGCCCATCGCGGTCGCACTGACGGTGGAGGGCCCGGGGCTGCCCATCACCACAGCCGCAGCGAAAAG
CAGGGCCACCAGAGAGCGCA

Downstream 100 bases:

>100_bases
ACACGTCCGACCGGACGGCGGCGAAACACCCTCGCGCCGCTTTCTTTCGATCGCCGTGCCCGCCCAACAGGCGGATATGG
CGTTCCGTCCCAGCGCTCGC

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 316; Mature: 315

Protein sequence:

>316_residues
MSPKRGRLGLPSKLQRAIFFEWVAYGSVREAVLNDCARDIAPDRDQIRIGSGAPGIERVEAHFLDHAFTPHRHDTYAIGI
TLSGLQTFGYLGEIHHCLPGQCHILHPDELHDGRAGTDEGFGYRIIYVDPALVQEALGGRMLPFVRSPIFQAPAVSEALA
AGIWNLDEEIDNVSRIDIAVAVANLLTAAAAKGSAPKAGPLAMVELTRIRDIIASCPREPISMDALEHASGLDRWTIARQ
FRRLFGTSPSRFRTQRQLNLVRRLLMEGESLSTASTDAGFSDQSHMSRHFKSTYGITPGAWISAVRTRHAQHPSDH

Sequences:

>Translated_316_residues
MSPKRGRLGLPSKLQRAIFFEWVAYGSVREAVLNDCARDIAPDRDQIRIGSGAPGIERVEAHFLDHAFTPHRHDTYAIGI
TLSGLQTFGYLGEIHHCLPGQCHILHPDELHDGRAGTDEGFGYRIIYVDPALVQEALGGRMLPFVRSPIFQAPAVSEALA
AGIWNLDEEIDNVSRIDIAVAVANLLTAAAAKGSAPKAGPLAMVELTRIRDIIASCPREPISMDALEHASGLDRWTIARQ
FRRLFGTSPSRFRTQRQLNLVRRLLMEGESLSTASTDAGFSDQSHMSRHFKSTYGITPGAWISAVRTRHAQHPSDH
>Mature_315_residues
SPKRGRLGLPSKLQRAIFFEWVAYGSVREAVLNDCARDIAPDRDQIRIGSGAPGIERVEAHFLDHAFTPHRHDTYAIGIT
LSGLQTFGYLGEIHHCLPGQCHILHPDELHDGRAGTDEGFGYRIIYVDPALVQEALGGRMLPFVRSPIFQAPAVSEALAA
GIWNLDEEIDNVSRIDIAVAVANLLTAAAAKGSAPKAGPLAMVELTRIRDIIASCPREPISMDALEHASGLDRWTIARQF
RRLFGTSPSRFRTQRQLNLVRRLLMEGESLSTASTDAGFSDQSHMSRHFKSTYGITPGAWISAVRTRHAQHPSDH

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018060 [H]

Pfam domain/function: PF02311 AraC_binding; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 34784; Mature: 34653

Theoretical pI: Translated: 7.48; Mature: 7.48

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSPKRGRLGLPSKLQRAIFFEWVAYGSVREAVLNDCARDIAPDRDQIRIGSGAPGIERVE
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCHHHHH
AHFLDHAFTPHRHDTYAIGITLSGLQTFGYLGEIHHCLPGQCHILHPDELHDGRAGTDEG
HHHHHHCCCCCCCCEEEEEEEEHHHHHHHHHHHHHHCCCCCEEEECCHHCCCCCCCCCCC
FGYRIIYVDPALVQEALGGRMLPFVRSPIFQAPAVSEALAAGIWNLDEEIDNVSRIDIAV
CCEEEEEECHHHHHHHHCCCCCHHHHCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHH
AVANLLTAAAAKGSAPKAGPLAMVELTRIRDIIASCPREPISMDALEHASGLDRWTIARQ
HHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCHHHHHHHH
FRRLFGTSPSRFRTQRQLNLVRRLLMEGESLSTASTDAGFSDQSHMSRHFKSTYGITPGA
HHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCHH
WISAVRTRHAQHPSDH
HHHHHHHHHCCCCCCC
>Mature Secondary Structure 
SPKRGRLGLPSKLQRAIFFEWVAYGSVREAVLNDCARDIAPDRDQIRIGSGAPGIERVE
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCHHHHH
AHFLDHAFTPHRHDTYAIGITLSGLQTFGYLGEIHHCLPGQCHILHPDELHDGRAGTDEG
HHHHHHCCCCCCCCEEEEEEEEHHHHHHHHHHHHHHCCCCCEEEECCHHCCCCCCCCCCC
FGYRIIYVDPALVQEALGGRMLPFVRSPIFQAPAVSEALAAGIWNLDEEIDNVSRIDIAV
CCEEEEEECHHHHHHHHCCCCCHHHHCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHH
AVANLLTAAAAKGSAPKAGPLAMVELTRIRDIIASCPREPISMDALEHASGLDRWTIARQ
HHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCHHHHHHHH
FRRLFGTSPSRFRTQRQLNLVRRLLMEGESLSTASTDAGFSDQSHMSRHFKSTYGITPGA
HHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCHH
WISAVRTRHAQHPSDH
HHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]