| Definition | Anabaena variabilis ATCC 29413 chromosome, complete genome. |
|---|---|
| Accession | NC_007413 |
| Length | 6,365,727 |
Click here to switch to the map view.
The map label for this gene is tnsC [H]
Identifier: 75909694
GI number: 75909694
Start: 4327217
End: 4328887
Strand: Direct
Name: tnsC [H]
Synonym: Ava_3488
Alternate gene names: 75909694
Gene position: 4327217-4328887 (Clockwise)
Preceding gene: 75909693
Following gene: 75909695
Centisome position: 67.98
GC content: 33.87
Gene sequence:
>1671_bases GTGGACAGAATTGAGAGTGAACTGGTTAAAATTCCTAATGGAGAACTAGCAGTTATTGCCAGATATATAGATCAAAAACT GCCAGAATACAACACTAATCCATTAATTCAGGCATTACCTCCTATCCTATCAGCAGCAGAATTTATAGATAAAGTAGCCA GAGAACCAAATTTTGATGAACAAGAGAGAGAGCTAGAACCACATTATAGATTTCATTGTATTGAGAGGTTATCTAGATAT TTTGACCCTCAAAATAAAACTCTTGAATTACAAAAAGTTATTTGTACGCTTATCATGACAGGCTATCTGTCAAGGAACCT TTTAAAACCTGAATATGCAAATCGCTCTAGGCAAATTTATAATGCAATAGGTAATGGAGGAGGTAAAAATTTAGAAAACT ATGTTAATCTTCCTACATCTGCGTCCGGCTTAACTCTAATTGGCCCATCAGGTATTGGAAAGACTACAAATTTCAAAAAT ATTCTTGAGCTTTATCCCCAAATAATTTTTCATCCTGATTATAGTGTTTACCAAATAGTTTGGCTGCGGGTAGATTGCCC TAAAACTTTAAAGGGGTTATGTATAGATACTTTTGCAGGTATCGATAAATTGTTAGGAACTAATTTATTAAAGAAATTTA ACCCAGCACGCACATCTGAAGATTATCTATTGGCTCAACTTGCACAAACAGCACACACTCATCATCTAGGAGTTTTGGTG ATTGATGAAATACAAAATTTAGCAACTGCAAAAAGAAATAGAGACGAAATATTAAATTTTTTAGTAAAGCTCGATAATAC TATTGGAATTCCAGTTATTCGTGTAGGTACGAATGAAGCCATTAGTTTTCTTCAAGGTAATCTTAGAAATGCTAGAAGAA ATACTGGAGAAGGAAGTAGAATGTGGGATAGAATGGTAAATAATGATGAATGGTGTTACTTTTTAGAAGGAATATGGGAA TACCAATGGACAAAAACACCTGTTCATTTCTCGGATGAAATAAAAGAAGTTTTTTATGATGAAAGCCAGGGAATTATTGA TATTGCTATAAAACTTTACAAAATGGTTCAATGGAGAGCGATTTCAATAGGTGACCAAGAAATTATTACGGTTGATCTGA TTCGTCAAGTAGCTAAAGAAGGATTGTATTTAGTAAAGCCAATGCTAGATGCAATTAGGTTAGGGGACAGAGAGTGGATG ATTAAATATAAGGATATTGCTCCTCTCGATATTACGGAATATCACAATAGATGTGTATCTGAGATTGATGCTAAAGATTT GACAGAGATTAAGAGATTAGCTAAAAAGCAGCAGAATCAGCAGAAAGTATCTCCGAAGCTCAATTATGTAATTAGTGAGC TGTTGAAATTGGAAGTAGAATCTGGTAAAGCAAAGGAATGTGCAGAACAAATTGTTTATAGTCATGAAGATCCAGACATT CCAATTCCATCTTTAGTTAATAAGGCATATGCTCTTGCTTTGCAAGGATGTCAAGTAAATGAGAGTCTTGCTAAAACAAG TACCAGGAAAGCTAAATTAAAGACAAAGTACCAAGAGAATGATATTCGGCGAATTGTCGAGAATGCCAAGAAAGACAAAA AATCTGCATACGAGGATTTGAAATTAGCAGGTATAATCAAAAATCCAGTTGAAGATTTTATCAATATTTAG
Upstream 100 bases:
>100_bases TTTCAGGTTGCAGAGAGTACAGCAGAAACCTCCGAACAGCCAGAATCACTACAGCCAAACCATCTGAATCTTCTTAAGAA AAAGCGACAGGAGCGAAAAC
Downstream 100 bases:
>100_bases CTTCTAAATGCTTAGTTTTTTCCCAACTCTGTATCCCGATGAACTTTTATATAGCACTTTAGCTAGATACCATATTCGGA GTGGAAATAAAAGTTTCAAG
Product: Tn7-like protein transposition protein C
Products: NA
Alternate protein names: Protein E [H]
Number of amino acids: Translated: 556; Mature: 556
Protein sequence:
>556_residues MDRIESELVKIPNGELAVIARYIDQKLPEYNTNPLIQALPPILSAAEFIDKVAREPNFDEQERELEPHYRFHCIERLSRY FDPQNKTLELQKVICTLIMTGYLSRNLLKPEYANRSRQIYNAIGNGGGKNLENYVNLPTSASGLTLIGPSGIGKTTNFKN ILELYPQIIFHPDYSVYQIVWLRVDCPKTLKGLCIDTFAGIDKLLGTNLLKKFNPARTSEDYLLAQLAQTAHTHHLGVLV IDEIQNLATAKRNRDEILNFLVKLDNTIGIPVIRVGTNEAISFLQGNLRNARRNTGEGSRMWDRMVNNDEWCYFLEGIWE YQWTKTPVHFSDEIKEVFYDESQGIIDIAIKLYKMVQWRAISIGDQEIITVDLIRQVAKEGLYLVKPMLDAIRLGDREWM IKYKDIAPLDITEYHNRCVSEIDAKDLTEIKRLAKKQQNQQKVSPKLNYVISELLKLEVESGKAKECAEQIVYSHEDPDI PIPSLVNKAYALALQGCQVNESLAKTSTRKAKLKTKYQENDIRRIVENAKKDKKSAYEDLKLAGIIKNPVEDFINI
Sequences:
>Translated_556_residues MDRIESELVKIPNGELAVIARYIDQKLPEYNTNPLIQALPPILSAAEFIDKVAREPNFDEQERELEPHYRFHCIERLSRY FDPQNKTLELQKVICTLIMTGYLSRNLLKPEYANRSRQIYNAIGNGGGKNLENYVNLPTSASGLTLIGPSGIGKTTNFKN ILELYPQIIFHPDYSVYQIVWLRVDCPKTLKGLCIDTFAGIDKLLGTNLLKKFNPARTSEDYLLAQLAQTAHTHHLGVLV IDEIQNLATAKRNRDEILNFLVKLDNTIGIPVIRVGTNEAISFLQGNLRNARRNTGEGSRMWDRMVNNDEWCYFLEGIWE YQWTKTPVHFSDEIKEVFYDESQGIIDIAIKLYKMVQWRAISIGDQEIITVDLIRQVAKEGLYLVKPMLDAIRLGDREWM IKYKDIAPLDITEYHNRCVSEIDAKDLTEIKRLAKKQQNQQKVSPKLNYVISELLKLEVESGKAKECAEQIVYSHEDPDI PIPSLVNKAYALALQGCQVNESLAKTSTRKAKLKTKYQENDIRRIVENAKKDKKSAYEDLKLAGIIKNPVEDFINI >Mature_556_residues MDRIESELVKIPNGELAVIARYIDQKLPEYNTNPLIQALPPILSAAEFIDKVAREPNFDEQERELEPHYRFHCIERLSRY FDPQNKTLELQKVICTLIMTGYLSRNLLKPEYANRSRQIYNAIGNGGGKNLENYVNLPTSASGLTLIGPSGIGKTTNFKN ILELYPQIIFHPDYSVYQIVWLRVDCPKTLKGLCIDTFAGIDKLLGTNLLKKFNPARTSEDYLLAQLAQTAHTHHLGVLV IDEIQNLATAKRNRDEILNFLVKLDNTIGIPVIRVGTNEAISFLQGNLRNARRNTGEGSRMWDRMVNNDEWCYFLEGIWE YQWTKTPVHFSDEIKEVFYDESQGIIDIAIKLYKMVQWRAISIGDQEIITVDLIRQVAKEGLYLVKPMLDAIRLGDREWM IKYKDIAPLDITEYHNRCVSEIDAKDLTEIKRLAKKQQNQQKVSPKLNYVISELLKLEVESGKAKECAEQIVYSHEDPDI PIPSLVNKAYALALQGCQVNESLAKTSTRKAKLKTKYQENDIRRIVENAKKDKKSAYEDLKLAGIIKNPVEDFINI
Specific function: TnsABC + tnsD promote high-frequency insertion of Tn7 into a specific target site known as att-Tn7 whereas tnsABC + tnsE promote low-frequency insertion into many different sites [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003593 - InterPro: IPR003959 - InterPro: IPR021542 [H]
Pfam domain/function: PF00004 AAA; PF11426 Tn7_TnsC [H]
EC number: NA
Molecular weight: Translated: 63745; Mature: 63745
Theoretical pI: Translated: 7.22; Mature: 7.22
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDRIESELVKIPNGELAVIARYIDQKLPEYNTNPLIQALPPILSAAEFIDKVAREPNFDE CCCHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCH QERELEPHYRFHCIERLSRYFDPQNKTLELQKVICTLIMTGYLSRNLLKPEYANRSRQIY HHHHCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH NAIGNGGGKNLENYVNLPTSASGLTLIGPSGIGKTTNFKNILELYPQIIFHPDYSVYQIV HHHCCCCCCCCHHHCCCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHEECCCCCEEEEE WLRVDCPKTLKGLCIDTFAGIDKLLGTNLLKKFNPARTSEDYLLAQLAQTAHTHHLGVLV EEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCEEE IDEIQNLATAKRNRDEILNFLVKLDNTIGIPVIRVGTNEAISFLQGNLRNARRNTGEGSR HHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCEEEECCHHHHHHHHHHHHHHHCCCCCHHH MWDRMVNNDEWCYFLEGIWEYQWTKTPVHFSDEIKEVFYDESQGIIDIAIKLYKMVQWRA HHHHHCCCCCEEEEEEHHHHCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHE ISIGDQEIITVDLIRQVAKEGLYLVKPMLDAIRLGDREWMIKYKDIAPLDITEYHNRCVS EECCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCHHHEEEECCCCCCCHHHHHHHHHH EIDAKDLTEIKRLAKKQQNQQKVSPKLNYVISELLKLEVESGKAKECAEQIVYSHEDPDI HCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCC PIPSLVNKAYALALQGCQVNESLAKTSTRKAKLKTKYQENDIRRIVENAKKDKKSAYEDL CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH KLAGIIKNPVEDFINI HHHHHHHHHHHHHHCC >Mature Secondary Structure MDRIESELVKIPNGELAVIARYIDQKLPEYNTNPLIQALPPILSAAEFIDKVAREPNFDE CCCHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCH QERELEPHYRFHCIERLSRYFDPQNKTLELQKVICTLIMTGYLSRNLLKPEYANRSRQIY HHHHCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH NAIGNGGGKNLENYVNLPTSASGLTLIGPSGIGKTTNFKNILELYPQIIFHPDYSVYQIV HHHCCCCCCCCHHHCCCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHEECCCCCEEEEE WLRVDCPKTLKGLCIDTFAGIDKLLGTNLLKKFNPARTSEDYLLAQLAQTAHTHHLGVLV EEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCEEE IDEIQNLATAKRNRDEILNFLVKLDNTIGIPVIRVGTNEAISFLQGNLRNARRNTGEGSR HHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCEEEECCHHHHHHHHHHHHHHHCCCCCHHH MWDRMVNNDEWCYFLEGIWEYQWTKTPVHFSDEIKEVFYDESQGIIDIAIKLYKMVQWRA HHHHHCCCCCEEEEEEHHHHCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHE ISIGDQEIITVDLIRQVAKEGLYLVKPMLDAIRLGDREWMIKYKDIAPLDITEYHNRCVS EECCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCHHHEEEECCCCCCCHHHHHHHHHH EIDAKDLTEIKRLAKKQQNQQKVSPKLNYVISELLKLEVESGKAKECAEQIVYSHEDPDI HCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCC PIPSLVNKAYALALQGCQVNESLAKTSTRKAKLKTKYQENDIRRIVENAKKDKKSAYEDL CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH KLAGIIKNPVEDFINI HHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 2156235; 3022239; 1655576; 1317955 [H]