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The map label for this gene is yddH [H]

Identifier: 75909602

GI number: 75909602

Start: 4224196

End: 4224900

Strand: Direct

Name: yddH [H]

Synonym: Ava_3396

Alternate gene names: 75909602

Gene position: 4224196-4224900 (Clockwise)

Preceding gene: 75909600

Following gene: 75909603

Centisome position: 66.36

GC content: 44.96

Gene sequence:

>705_bases
ATGCTCTCTAATTTAGAATCGTCCATCCAAAGCCCCAAATCGGGAGAATACCAATGTCTTGCTGCGTTGAATTTATATGA
TTCTCCTGAATGTACCAGCTTGGCAACTCAGGCCGCAGTTGGGCGACATTTGCAGGTAACATCAAATCAGCAAGGTGCGG
CAGTTGAGGTGTGTTTATGTGAGGATGACTACCCAGGGTGGCTATCCCTTGGAGACTTGGGTTTATTAAAACCTGCTACT
GTACTTTATCAGGCTAAATCATTTTCGGAATCGGAAATTAAAAAACTGCTACCAGGGGCGATCGCTTTTACCCAAAAAGC
CATGCAGCAATCGAATTACTATCTTTGGGGCGGTACGGTCGGGCCGAATTATGATTGTTCTGGTTTAATGCAGGCGGCGT
TTGTATCTGTGGGGATTTGGCTACCCAGAGACGCTTATCAACAAGAGGCTTTTACCCAAGCAATTACTATTGATGAATTA
GCACCGGGTGACCTAGTATTTTTTGGCACTCCTGTAAAAGCTACTCATGTAGGGCTGTATTTAGGAGATGGTTGTTATAT
CCATAGTTCTGGTAAAGCACAAGGACGCGATGGTATTGGCATTGATATCCTCTCGGAACAGGGAGATGTGGTAAGTCGGT
CATATTACCAGCAACTACGGGGTGCCGGCAGAGTTGTTAAGAGTTACAAACCACAAAGACACTAA

Upstream 100 bases:

>100_bases
GGTTACGGGCTAAAGTCGGAAATGCCGTCCAAGTAGCTTCTAAAATACCGTTACCCAGATTTTCTAGTTGTTCGTCTTTT
TGAAAAAAAACCATTGCAGA

Downstream 100 bases:

>100_bases
GGAAACTGAGGAATATGAGGAATGGAGTAATTTTGGCCAGGGTGAACGAAGGAAATGAAAGTATTTCCGCCATTATTCCT
AATGTTTCCGTGGTGGTTCC

Product: NLP/P60

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 234; Mature: 234

Protein sequence:

>234_residues
MLSNLESSIQSPKSGEYQCLAALNLYDSPECTSLATQAAVGRHLQVTSNQQGAAVEVCLCEDDYPGWLSLGDLGLLKPAT
VLYQAKSFSESEIKKLLPGAIAFTQKAMQQSNYYLWGGTVGPNYDCSGLMQAAFVSVGIWLPRDAYQQEAFTQAITIDEL
APGDLVFFGTPVKATHVGLYLGDGCYIHSSGKAQGRDGIGIDILSEQGDVVSRSYYQQLRGAGRVVKSYKPQRH

Sequences:

>Translated_234_residues
MLSNLESSIQSPKSGEYQCLAALNLYDSPECTSLATQAAVGRHLQVTSNQQGAAVEVCLCEDDYPGWLSLGDLGLLKPAT
VLYQAKSFSESEIKKLLPGAIAFTQKAMQQSNYYLWGGTVGPNYDCSGLMQAAFVSVGIWLPRDAYQQEAFTQAITIDEL
APGDLVFFGTPVKATHVGLYLGDGCYIHSSGKAQGRDGIGIDILSEQGDVVSRSYYQQLRGAGRVVKSYKPQRH
>Mature_234_residues
MLSNLESSIQSPKSGEYQCLAALNLYDSPECTSLATQAAVGRHLQVTSNQQGAAVEVCLCEDDYPGWLSLGDLGLLKPAT
VLYQAKSFSESEIKKLLPGAIAFTQKAMQQSNYYLWGGTVGPNYDCSGLMQAAFVSVGIWLPRDAYQQEAFTQAITIDEL
APGDLVFFGTPVKATHVGLYLGDGCYIHSSGKAQGRDGIGIDILSEQGDVVSRSYYQQLRGAGRVVKSYKPQRH

Specific function: Unknown

COG id: COG0791

COG function: function code M; Cell wall-associated hydrolases (invasion-associated proteins)

Gene ontology:

Cell location: Attached To The Membrane By A Lipid Anchor [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nlpC/p60 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008258
- InterPro:   IPR000064 [H]

Pfam domain/function: PF00877 NLPC_P60; PF01464 SLT [H]

EC number: NA

Molecular weight: Translated: 25315; Mature: 25315

Theoretical pI: Translated: 5.24; Mature: 5.24

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.6 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
2.6 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLSNLESSIQSPKSGEYQCLAALNLYDSPECTSLATQAAVGRHLQVTSNQQGAAVEVCLC
CCCCHHHHHCCCCCCCEEEEEEEECCCCCCHHHHHHHHHHCCEEEEECCCCCCEEEEEEE
EDDYPGWLSLGDLGLLKPATVLYQAKSFSESEIKKLLPGAIAFTQKAMQQSNYYLWGGTV
CCCCCCEEEECCCCCCCHHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHHHCCEEEEECCC
GPNYDCSGLMQAAFVSVGIWLPRDAYQQEAFTQAITIDELAPGDLVFFGTPVKATHVGLY
CCCCCHHHHHHHHHHHHCEECCCHHHHHHHHHHHEECCCCCCCCEEEEECCCCEEEEEEE
LGDGCYIHSSGKAQGRDGIGIDILSEQGDVVSRSYYQQLRGAGRVVKSYKPQRH
ECCCEEEECCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MLSNLESSIQSPKSGEYQCLAALNLYDSPECTSLATQAAVGRHLQVTSNQQGAAVEVCLC
CCCCHHHHHCCCCCCCEEEEEEEECCCCCCHHHHHHHHHHCCEEEEECCCCCCEEEEEEE
EDDYPGWLSLGDLGLLKPATVLYQAKSFSESEIKKLLPGAIAFTQKAMQQSNYYLWGGTV
CCCCCCEEEECCCCCCCHHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHHHCCEEEEECCC
GPNYDCSGLMQAAFVSVGIWLPRDAYQQEAFTQAITIDELAPGDLVFFGTPVKATHVGLY
CCCCCHHHHHHHHHHHHCEECCCHHHHHHHHHHHEECCCCCCCCEEEEECCCCEEEEEEE
LGDGCYIHSSGKAQGRDGIGIDILSEQGDVVSRSYYQQLRGAGRVVKSYKPQRH
ECCCEEEECCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]