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The map label for this gene is ycgR [H]

Identifier: 75909415

GI number: 75909415

Start: 3988460

End: 3989512

Strand: Direct

Name: ycgR [H]

Synonym: Ava_3208

Alternate gene names: 75909415

Gene position: 3988460-3989512 (Clockwise)

Preceding gene: 75909413

Following gene: 75909416

Centisome position: 62.66

GC content: 44.35

Gene sequence:

>1053_bases
ATGAATCAACTGAACAATGGTTTCACAATATTTCTGAGTTTGCTAGTCGAGGCGATGCCCTTTTTGCTGCTTGGGGTTTT
ATTCTCCAGTTTGCTGCTGTTTTTTGTAGATGAGCGCAAATTAGTAGAAAAAATGCCCAGAAATCCCTTATTAGGTGCTT
TAGTTGGCAGTATGGTCGGCTTTTTGTTTCCAGTCTGTGAATGCGGAAATGTGCCAGTAGCGCGGCGCTTGCTGATGCAA
GGAGTACCTACACCCGTAGCGGTTGGTTTTTTACTAGCAGCACCGACAATTAACCCGATTGTGATTTGGGCAACATGGAC
AGCATTTAGGGAACAACCAGAAATAGTAGTTTTACGTGTGATATTTTCGCTCTTAATCGCCACAATTATCGGTTTTGTTT
TCAGTTTTCAAGCGGACTTAGAACCCATAGTCCAACCAGCGATCGCTCGTTATTTAAAATTTAATCCCCCAGCCAAACCA
GAAACAAAACGCCGGGGTAAATACTCCACAACAAAAGACACGAATACCCCCAGTATGTTGCGTTCTGGGACTTATATTTT
AGGTGGTCGAGCAGGTGGTGTGCCAACACGACTAGATGCTAACCTAGCCCCAACAAATGAGGCTAGCAGCAACAATAAAC
CGTTGAGAGATAAACTACGCCTGTTATTAGATAACAGCATCCAAGAATTGCGGGAGTTGGGTGCAGTCATGGTAATTGGG
AGTGCGATCGCCGCAGCCATTCAAGTCCTAGCACCCCGTGAATTAATCCTCAGTCTAGGTTCTGGCCCGATTACCTCAAT
TCTCGTCATGCTGGTGTTAGCCGCAGTAGTATCCATCTGTTCCACTGTCGATTCATTTTTTGCCCTATCATTCGCCGCCA
CCTTCAGCAGTGGTTCATTATTAGCCTTTCTCGTCTTTGGTCCCATGATTGACATCAAAAGTGTCGGCTTGATGTTATCC
ATATTCAAACCCAAGACGATCTTCTACTTATTTGCCTTAGCAGGGCTACTGACATTCTTATTCACCCTTTTCATTAACTT
GCACGTTATTTGA

Upstream 100 bases:

>100_bases
AATTTTATCTTGATCTGTCACTAAATGTGTTTGATCCCCGTTTCTATAGAATGACTAGGCTTAACCTAAAAAATCCACAG
CGCTTTTGACTGCGACACCC

Downstream 100 bases:

>100_bases
TATTTCGTCAGTGGTCAGGTGTCCTTCGTTAGTTCTTCTTCTGACTATTGACCACTGACTACTGACCACTGACTATTGAC
TAATAACCAATGACTAAATC

Product: permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 350; Mature: 350

Protein sequence:

>350_residues
MNQLNNGFTIFLSLLVEAMPFLLLGVLFSSLLLFFVDERKLVEKMPRNPLLGALVGSMVGFLFPVCECGNVPVARRLLMQ
GVPTPVAVGFLLAAPTINPIVIWATWTAFREQPEIVVLRVIFSLLIATIIGFVFSFQADLEPIVQPAIARYLKFNPPAKP
ETKRRGKYSTTKDTNTPSMLRSGTYILGGRAGGVPTRLDANLAPTNEASSNNKPLRDKLRLLLDNSIQELRELGAVMVIG
SAIAAAIQVLAPRELILSLGSGPITSILVMLVLAAVVSICSTVDSFFALSFAATFSSGSLLAFLVFGPMIDIKSVGLMLS
IFKPKTIFYLFALAGLLTFLFTLFINLHVI

Sequences:

>Translated_350_residues
MNQLNNGFTIFLSLLVEAMPFLLLGVLFSSLLLFFVDERKLVEKMPRNPLLGALVGSMVGFLFPVCECGNVPVARRLLMQ
GVPTPVAVGFLLAAPTINPIVIWATWTAFREQPEIVVLRVIFSLLIATIIGFVFSFQADLEPIVQPAIARYLKFNPPAKP
ETKRRGKYSTTKDTNTPSMLRSGTYILGGRAGGVPTRLDANLAPTNEASSNNKPLRDKLRLLLDNSIQELRELGAVMVIG
SAIAAAIQVLAPRELILSLGSGPITSILVMLVLAAVVSICSTVDSFFALSFAATFSSGSLLAFLVFGPMIDIKSVGLMLS
IFKPKTIFYLFALAGLLTFLFTLFINLHVI
>Mature_350_residues
MNQLNNGFTIFLSLLVEAMPFLLLGVLFSSLLLFFVDERKLVEKMPRNPLLGALVGSMVGFLFPVCECGNVPVARRLLMQ
GVPTPVAVGFLLAAPTINPIVIWATWTAFREQPEIVVLRVIFSLLIATIIGFVFSFQADLEPIVQPAIARYLKFNPPAKP
ETKRRGKYSTTKDTNTPSMLRSGTYILGGRAGGVPTRLDANLAPTNEASSNNKPLRDKLRLLLDNSIQELRELGAVMVIG
SAIAAAIQVLAPRELILSLGSGPITSILVMLVLAAVVSICSTVDSFFALSFAATFSSGSLLAFLVFGPMIDIKSVGLMLS
IFKPKTIFYLFALAGLLTFLFTLFINLHVI

Specific function: Unknown

COG id: COG0701

COG function: function code R; Predicted permeases

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0718 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005524 [H]

Pfam domain/function: PF03773 DUF318 [H]

EC number: NA

Molecular weight: Translated: 37979; Mature: 37979

Theoretical pI: Translated: 10.11; Mature: 10.11

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNQLNNGFTIFLSLLVEAMPFLLLGVLFSSLLLFFVDERKLVEKMPRNPLLGALVGSMVG
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
FLFPVCECGNVPVARRLLMQGVPTPVAVGFLLAAPTINPIVIWATWTAFREQPEIVVLRV
HHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHCCCCCCEEEEEEHHHHHCCCCCHHHHH
IFSLLIATIIGFVFSFQADLEPIVQPAIARYLKFNPPAKPETKRRGKYSTTKDTNTPSML
HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCCCCCCHHHH
RSGTYILGGRAGGVPTRLDANLAPTNEASSNNKPLRDKLRLLLDNSIQELRELGAVMVIG
HCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHH
SAIAAAIQVLAPRELILSLGSGPITSILVMLVLAAVVSICSTVDSFFALSFAATFSSGSL
HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCH
LAFLVFGPMIDIKSVGLMLSIFKPKTIFYLFALAGLLTFLFTLFINLHVI
HHHHHHCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MNQLNNGFTIFLSLLVEAMPFLLLGVLFSSLLLFFVDERKLVEKMPRNPLLGALVGSMVG
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
FLFPVCECGNVPVARRLLMQGVPTPVAVGFLLAAPTINPIVIWATWTAFREQPEIVVLRV
HHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHCCCCCCEEEEEEHHHHHCCCCCHHHHH
IFSLLIATIIGFVFSFQADLEPIVQPAIARYLKFNPPAKPETKRRGKYSTTKDTNTPSML
HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCCCCCCHHHH
RSGTYILGGRAGGVPTRLDANLAPTNEASSNNKPLRDKLRLLLDNSIQELRELGAVMVIG
HCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHH
SAIAAAIQVLAPRELILSLGSGPITSILVMLVLAAVVSICSTVDSFFALSFAATFSSGSL
HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCH
LAFLVFGPMIDIKSVGLMLSIFKPKTIFYLFALAGLLTFLFTLFINLHVI
HHHHHHCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8969502; 9384377 [H]