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The map label for this gene is rbpB [H]

Identifier: 75909339

GI number: 75909339

Start: 3888835

End: 3889146

Strand: Direct

Name: rbpB [H]

Synonym: Ava_3132

Alternate gene names: 75909339

Gene position: 3888835-3889146 (Clockwise)

Preceding gene: 75909335

Following gene: 75909342

Centisome position: 61.09

GC content: 46.15

Gene sequence:

>312_bases
ATGTCAGTTTATGTAGGCAATCTTTCTTACGACGTTACAGAAGATAGTTTGAATGCGGTTTTTGCAGAATATGGTTCTGT
AAAACGTGTTCAGCTACCTACTGATCGTGAAACAGGCCGGATGCGCGGCTTTGGTTTTGTGGAAATGGGTTCAGATGCTG
AAGAAACAGCAGCCATTGAAGCACTTGATGGTGCTGAGTGGATGGGACGTGACCTCAAAGTGAACAAGGCTAAACCAAAA
GAAGATAGAGGTTCTTTTGGTGGTGGTAATCGTGGTGGCTATGGTGGCGGCGGTGGACGCAATCGCTACTAA

Upstream 100 bases:

>100_bases
CCGCGTTTGTTTTTAGTATTGACGGGCTTTTCCTTTTGGTATTTACAGACTTTTCTCCGAAACCTAAATCTCTACGTACC
TATGATTTCGGAGACAATCT

Downstream 100 bases:

>100_bases
GCTTGATTGATGTGATGCTTGAAGCTTAACACATTGATTTAGCACATTCATTGCAATTAATAATGGCTCAGGCAGAAATG
CTTGAGCTTTCTTATTGGGA

Product: RNA-binding region RNP-1

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 103; Mature: 102

Protein sequence:

>103_residues
MSVYVGNLSYDVTEDSLNAVFAEYGSVKRVQLPTDRETGRMRGFGFVEMGSDAEETAAIEALDGAEWMGRDLKVNKAKPK
EDRGSFGGGNRGGYGGGGGRNRY

Sequences:

>Translated_103_residues
MSVYVGNLSYDVTEDSLNAVFAEYGSVKRVQLPTDRETGRMRGFGFVEMGSDAEETAAIEALDGAEWMGRDLKVNKAKPK
EDRGSFGGGNRGGYGGGGGRNRY
>Mature_102_residues
SVYVGNLSYDVTEDSLNAVFAEYGSVKRVQLPTDRETGRMRGFGFVEMGSDAEETAAIEALDGAEWMGRDLKVNKAKPKE
DRGSFGGGNRGGYGGGGGRNRY

Specific function: Unknown

COG id: COG0724

COG function: function code R; RNA-binding proteins (RRM domain)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 RRM (RNA recognition motif) domain [H]

Homologues:

Organism=Homo sapiens, GI35493811, Length=85, Percent_Identity=37.6470588235294, Blast_Score=69, Evalue=1e-12,
Organism=Homo sapiens, GI4757926, Length=85, Percent_Identity=37.6470588235294, Blast_Score=69, Evalue=1e-12,
Organism=Homo sapiens, GI4557493, Length=91, Percent_Identity=41.7582417582418, Blast_Score=69, Evalue=1e-12,
Organism=Homo sapiens, GI5174637, Length=77, Percent_Identity=40.2597402597403, Blast_Score=67, Evalue=3e-12,
Organism=Homo sapiens, GI303305009, Length=77, Percent_Identity=40.2597402597403, Blast_Score=67, Evalue=3e-12,
Organism=Homo sapiens, GI45439316, Length=77, Percent_Identity=40.2597402597403, Blast_Score=67, Evalue=3e-12,
Organism=Homo sapiens, GI14149675, Length=89, Percent_Identity=42.6966292134831, Blast_Score=66, Evalue=6e-12,
Organism=Homo sapiens, GI4502847, Length=85, Percent_Identity=40, Blast_Score=65, Evalue=1e-11,
Organism=Homo sapiens, GI116734694, Length=104, Percent_Identity=33.6538461538462, Blast_Score=62, Evalue=7e-11,
Organism=Homo sapiens, GI116734698, Length=104, Percent_Identity=33.6538461538462, Blast_Score=62, Evalue=7e-11,
Organism=Homo sapiens, GI116734696, Length=104, Percent_Identity=33.6538461538462, Blast_Score=62, Evalue=7e-11,
Organism=Caenorhabditis elegans, GI17508585, Length=77, Percent_Identity=44.1558441558442, Blast_Score=74, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI17553656, Length=86, Percent_Identity=40.6976744186046, Blast_Score=74, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI17508587, Length=82, Percent_Identity=42.6829268292683, Blast_Score=74, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI17508567, Length=78, Percent_Identity=47.4358974358974, Blast_Score=72, Evalue=4e-14,
Organism=Caenorhabditis elegans, GI17539498, Length=80, Percent_Identity=38.75, Blast_Score=67, Evalue=2e-12,
Organism=Drosophila melanogaster, GI17647301, Length=84, Percent_Identity=41.6666666666667, Blast_Score=72, Evalue=6e-14,
Organism=Drosophila melanogaster, GI17137710, Length=82, Percent_Identity=40.2439024390244, Blast_Score=69, Evalue=6e-13,
Organism=Drosophila melanogaster, GI19920866, Length=74, Percent_Identity=40.5405405405405, Blast_Score=66, Evalue=5e-12,
Organism=Drosophila melanogaster, GI24582412, Length=74, Percent_Identity=40.5405405405405, Blast_Score=66, Evalue=5e-12,
Organism=Drosophila melanogaster, GI24582417, Length=85, Percent_Identity=36.4705882352941, Blast_Score=65, Evalue=6e-12,
Organism=Drosophila melanogaster, GI45550943, Length=85, Percent_Identity=36.4705882352941, Blast_Score=65, Evalue=6e-12,
Organism=Drosophila melanogaster, GI24582419, Length=85, Percent_Identity=36.4705882352941, Blast_Score=65, Evalue=6e-12,
Organism=Drosophila melanogaster, GI24582423, Length=85, Percent_Identity=36.4705882352941, Blast_Score=65, Evalue=6e-12,
Organism=Drosophila melanogaster, GI24582421, Length=85, Percent_Identity=36.4705882352941, Blast_Score=65, Evalue=6e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012677
- InterPro:   IPR000504
- InterPro:   IPR015465 [H]

Pfam domain/function: PF00076 RRM_1 [H]

EC number: NA

Molecular weight: Translated: 11092; Mature: 10961

Theoretical pI: Translated: 4.88; Mature: 4.88

Prosite motif: PS50102 RRM

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSVYVGNLSYDVTEDSLNAVFAEYGSVKRVQLPTDRETGRMRGFGFVEMGSDAEETAAIE
CEEEECCCEEECCCHHHHHHHHHCCCEEEEECCCCCCCCCCCCCEEEEECCCCCHHHEEE
ALDGAEWMGRDLKVNKAKPKEDRGSFGGGNRGGYGGGGGRNRY
CCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
SVYVGNLSYDVTEDSLNAVFAEYGSVKRVQLPTDRETGRMRGFGFVEMGSDAEETAAIE
EEEECCCEEECCCHHHHHHHHHCCCEEEEECCCCCCCCCCCCCEEEEECCCCCHHHEEE
ALDGAEWMGRDLKVNKAKPKEDRGSFGGGNRGGYGGGGGRNRY
CCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11759840 [H]