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The map label for this gene is pecC [H]

Identifier: 75909137

GI number: 75909137

Start: 3633249

End: 3634085

Strand: Direct

Name: pecC [H]

Synonym: Ava_2927

Alternate gene names: 75909137

Gene position: 3633249-3634085 (Clockwise)

Preceding gene: 75909136

Following gene: 75909138

Centisome position: 57.08

GC content: 40.86

Gene sequence:

>837_bases
ATGAGTAGTTCAGTCGCAGAAAGGCTAGCAATTAGAGATGCCATCGGCAATAAAGTTGAACTGCGCCAAAATTGGAGCGA
AGATGATTTACAACAAGTATTCCGGGCTGCTTATGAACAAATTTTTGGACGGCAAGGAATATATGCTAGCCAAAAATTTA
CGAGTGCGGAAGCTTTGTTAAGAAATGGCAAAATCAGTGTGCGGCAATTTGTGGAGGTTTTAGCCAAATCTGAGTTTTAC
AAAGAATGCTTTTTTTATAAAAACTCTCAAGTGCGTTTGATCGAATTAAACTATAAGCATTTACTAGGACGCGCACCGTA
CGATCAATCAGAGATTGCTGATCATGTAGACATTTATGCTGCTCGTGGCTACGATGCTGACATTGATGCTTACATTTACA
GTCCAGAATACGAAAATGCTTTTGGTAATTCTATTGTTCCTTATTACCGTGGATTCCAATCAATTCCTGGGATGAAAACA
GTAGGATTTAATCGCATATGTGAGCTTTATCGCGGTCGGGGTAATAGCGATAATGCACAAATGGGAAAGAAAAATTCTCG
TTTACGAACAAAAGTTTCTTTGAATTTGCCTAATGGAATTTTGCCACCAACCTCCGCCGGGACAAACTTTGTTTCCGCAG
CACCGACGTTAATCAGTTCGGCGACAAAGGGTGATAATCGGATGTTTGTGATTGAAGCGATCGCCGGTGGATTGAATACA
AATGTAGCAATCCGTCGCAGCCGACAGGTTTACACCGTTTCCTATGAAAGACTTTCTGCTACTTACCAAGAAATTCATAA
GCGTGGTGGAAAGATAGTCAAGATTTCCCAAGTGTAG

Upstream 100 bases:

>100_bases
GAGTTACTTTGTAACTGCGGTGAACATAATTGCAGCATTTTTCTAATTCCCAAGACCCAAATTTATAATCAAAAAAATTG
AGAAAGGAGCGTTTGTCAAA

Downstream 100 bases:

>100_bases
AAATGGTTGCTAGATACCCGACTCCTTCAAGTCGGGTATCTGAGTAAATTTTAAATTTCGGAGCGAAGTGATGTGACATC
TGAACCAATTCTTTCTCCAG

Product: CpcD phycobilisome linker-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 278; Mature: 277

Protein sequence:

>278_residues
MSSSVAERLAIRDAIGNKVELRQNWSEDDLQQVFRAAYEQIFGRQGIYASQKFTSAEALLRNGKISVRQFVEVLAKSEFY
KECFFYKNSQVRLIELNYKHLLGRAPYDQSEIADHVDIYAARGYDADIDAYIYSPEYENAFGNSIVPYYRGFQSIPGMKT
VGFNRICELYRGRGNSDNAQMGKKNSRLRTKVSLNLPNGILPPTSAGTNFVSAAPTLISSATKGDNRMFVIEAIAGGLNT
NVAIRRSRQVYTVSYERLSATYQEIHKRGGKIVKISQV

Sequences:

>Translated_278_residues
MSSSVAERLAIRDAIGNKVELRQNWSEDDLQQVFRAAYEQIFGRQGIYASQKFTSAEALLRNGKISVRQFVEVLAKSEFY
KECFFYKNSQVRLIELNYKHLLGRAPYDQSEIADHVDIYAARGYDADIDAYIYSPEYENAFGNSIVPYYRGFQSIPGMKT
VGFNRICELYRGRGNSDNAQMGKKNSRLRTKVSLNLPNGILPPTSAGTNFVSAAPTLISSATKGDNRMFVIEAIAGGLNT
NVAIRRSRQVYTVSYERLSATYQEIHKRGGKIVKISQV
>Mature_277_residues
SSSVAERLAIRDAIGNKVELRQNWSEDDLQQVFRAAYEQIFGRQGIYASQKFTSAEALLRNGKISVRQFVEVLAKSEFYK
ECFFYKNSQVRLIELNYKHLLGRAPYDQSEIADHVDIYAARGYDADIDAYIYSPEYENAFGNSIVPYYRGFQSIPGMKTV
GFNRICELYRGRGNSDNAQMGKKNSRLRTKVSLNLPNGILPPTSAGTNFVSAAPTLISSATKGDNRMFVIEAIAGGLNTN
VAIRRSRQVYTVSYERLSATYQEIHKRGGKIVKISQV

Specific function: Rod linker protein, associated with phycoerythrocyanin. Linker polypeptides determine the state of aggregation and the location of the disk-shaped phycobiliprotein units within the phycobilisome and modulate their spectroscopic properties in order to medi

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cellular thylakoid membrane; Peripheral membrane protein; Cytoplasmic side. Note=This protein occurs in the rod, it is associated with phycoerythrocyanin [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PBS-linker domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001297
- InterPro:   IPR016470
- InterPro:   IPR008213
- ProDom:   PD000852 [H]

Pfam domain/function: PF01383 CpcD; PF00427 PBS_linker_poly [H]

EC number: NA

Molecular weight: Translated: 31305; Mature: 31174

Theoretical pI: Translated: 9.81; Mature: 9.81

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSSVAERLAIRDAIGNKVELRQNWSEDDLQQVFRAAYEQIFGRQGIYASQKFTSAEALL
CCHHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH
RNGKISVRQFVEVLAKSEFYKECFFYKNSQVRLIELNYKHLLGRAPYDQSEIADHVDIYA
HCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECHHHHHCCCCCCHHHHHHHHHEEE
ARGYDADIDAYIYSPEYENAFGNSIVPYYRGFQSIPGMKTVGFNRICELYRGRGNSDNAQ
ECCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCCCC
MGKKNSRLRTKVSLNLPNGILPPTSAGTNFVSAAPTLISSATKGDNRMFVIEAIAGGLNT
CCCCCCCEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEEEECCCCCC
NVAIRRSRQVYTVSYERLSATYQEIHKRGGKIVKISQV
CEEEEECCEEEEEHHHHHHHHHHHHHHCCCCEEEEECC
>Mature Secondary Structure 
SSSVAERLAIRDAIGNKVELRQNWSEDDLQQVFRAAYEQIFGRQGIYASQKFTSAEALL
CHHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH
RNGKISVRQFVEVLAKSEFYKECFFYKNSQVRLIELNYKHLLGRAPYDQSEIADHVDIYA
HCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECHHHHHCCCCCCHHHHHHHHHEEE
ARGYDADIDAYIYSPEYENAFGNSIVPYYRGFQSIPGMKTVGFNRICELYRGRGNSDNAQ
ECCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCCCC
MGKKNSRLRTKVSLNLPNGILPPTSAGTNFVSAAPTLISSATKGDNRMFVIEAIAGGLNT
CCCCCCCEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEEEECCCCCC
NVAIRRSRQVYTVSYERLSATYQEIHKRGGKIVKISQV
CEEEEECCEEEEEHHHHHHHHHHHHHHCCCCEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 1556083; 11759840; 1743523 [H]