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The map label for this gene is yggS [C]

Identifier: 75909109

GI number: 75909109

Start: 3602972

End: 3603640

Strand: Direct

Name: yggS [C]

Synonym: Ava_2899

Alternate gene names: 75909109

Gene position: 3602972-3603640 (Clockwise)

Preceding gene: 75909108

Following gene: 75909110

Centisome position: 56.6

GC content: 42.0

Gene sequence:

>669_bases
ATGATTAGTTCGATCAACGAACGTATTACTCACATTCGGGCTTCCCTACCGCCTTCAGTCAGGCTAATTGCTGTCACAAA
GCAAATGCCGACTGAAGTTATTCGTGCTGCTTATGCTGCTGGTGTCCGCGATTTTGGCGAAAATCGTATCCAAGAAGCTG
CTAGTAAGCAAGCCCAGTTACAAGACTTACCAGATATTACTTGGCACTTTATTGGACATTTGCAAGCGAACAAAGCCAAA
AAAGCTCTAGAACAATTTCAATGGATTCACTCTGTAGATAACTTGAAACTAGCACAGCGTTTAGACCAATTAGCGCAACA
GCTAGGAGTCAATCCTCAAGTTTGTCTACAGGTGAAAATCCTCCCAGATCCCAATAAGTCTGGTTGGAGTGTACCAGAAC
TGCTGGCAGATTTACCCGCACTCAACCAGTGTAAAACTTTACAAATTCAGGGTTTAATGACAATTCCACCTTTTGGTTTA
AATGATGCGAAAATTCTTCATGTATTTAATAGCACTTCCAAATTAGCAGAAGATATTGCTGAACAAAACTGGGATCATAT
TCACATGGAGCAGTTATCGATGGGTATGTCAGGGGACTACCAACTTGCAGTACAAGCTGGAGCAACGATGGTACGATTGG
GAACCATATTATTTGGCCAGCGTACTTAA

Upstream 100 bases:

>100_bases
AGGCAAGAATGTTGTTAGAAAATCGCTTGCGTAATTTGCGCCGCAATGGTCAATCACAGGAGTACGATCAGCTTCAGAGT
GTTTTCCAACGCACCTTCCA

Downstream 100 bases:

>100_bases
GACATATTACTCAGATTTTTTTTCTAGTATCAAATAGCCCTGGGTATGAATTACGGACAATAATTTTCTATACCAGTGTA
ATAAATTACAAAATTTTTAC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 222; Mature: 222

Protein sequence:

>222_residues
MISSINERITHIRASLPPSVRLIAVTKQMPTEVIRAAYAAGVRDFGENRIQEAASKQAQLQDLPDITWHFIGHLQANKAK
KALEQFQWIHSVDNLKLAQRLDQLAQQLGVNPQVCLQVKILPDPNKSGWSVPELLADLPALNQCKTLQIQGLMTIPPFGL
NDAKILHVFNSTSKLAEDIAEQNWDHIHMEQLSMGMSGDYQLAVQAGATMVRLGTILFGQRT

Sequences:

>Translated_222_residues
MISSINERITHIRASLPPSVRLIAVTKQMPTEVIRAAYAAGVRDFGENRIQEAASKQAQLQDLPDITWHFIGHLQANKAK
KALEQFQWIHSVDNLKLAQRLDQLAQQLGVNPQVCLQVKILPDPNKSGWSVPELLADLPALNQCKTLQIQGLMTIPPFGL
NDAKILHVFNSTSKLAEDIAEQNWDHIHMEQLSMGMSGDYQLAVQAGATMVRLGTILFGQRT
>Mature_222_residues
MISSINERITHIRASLPPSVRLIAVTKQMPTEVIRAAYAAGVRDFGENRIQEAASKQAQLQDLPDITWHFIGHLQANKAK
KALEQFQWIHSVDNLKLAQRLDQLAQQLGVNPQVCLQVKILPDPNKSGWSVPELLADLPALNQCKTLQIQGLMTIPPFGL
NDAKILHVFNSTSKLAEDIAEQNWDHIHMEQLSMGMSGDYQLAVQAGATMVRLGTILFGQRT

Specific function: Unknown

COG id: COG0325

COG function: function code R; Predicted enzyme with a TIM-barrel fold

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0001 family [H]

Homologues:

Organism=Homo sapiens, GI6005842, Length=235, Percent_Identity=34.8936170212766, Blast_Score=118, Evalue=4e-27,
Organism=Escherichia coli, GI1789321, Length=210, Percent_Identity=37.6190476190476, Blast_Score=132, Evalue=1e-32,
Organism=Caenorhabditis elegans, GI17533025, Length=230, Percent_Identity=33.4782608695652, Blast_Score=104, Evalue=3e-23,
Organism=Saccharomyces cerevisiae, GI6319435, Length=211, Percent_Identity=33.6492890995261, Blast_Score=102, Evalue=4e-23,
Organism=Drosophila melanogaster, GI45550861, Length=213, Percent_Identity=38.4976525821596, Blast_Score=118, Evalue=3e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001608
- InterPro:   IPR011078 [H]

Pfam domain/function: PF01168 Ala_racemase_N [H]

EC number: NA

Molecular weight: Translated: 24689; Mature: 24689

Theoretical pI: Translated: 7.71; Mature: 7.71

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MISSINERITHIRASLPPSVRLIAVTKQMPTEVIRAAYAAGVRDFGENRIQEAASKQAQL
CCCCHHHHHHHHHHCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QDLPDITWHFIGHLQANKAKKALEQFQWIHSVDNLKLAQRLDQLAQQLGVNPQVCLQVKI
HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEE
LPDPNKSGWSVPELLADLPALNQCKTLQIQGLMTIPPFGLNDAKILHVFNSTSKLAEDIA
ECCCCCCCCCHHHHHHHCCCCCCCCEEEEEEEEECCCCCCCCCEEEEEECCHHHHHHHHH
EQNWDHIHMEQLSMGMSGDYQLAVQAGATMVRLGTILFGQRT
HCCCCEEEHHHHHCCCCCCEEEEECCCCHHHHHHHHHHCCCC
>Mature Secondary Structure
MISSINERITHIRASLPPSVRLIAVTKQMPTEVIRAAYAAGVRDFGENRIQEAASKQAQL
CCCCHHHHHHHHHHCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QDLPDITWHFIGHLQANKAKKALEQFQWIHSVDNLKLAQRLDQLAQQLGVNPQVCLQVKI
HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEE
LPDPNKSGWSVPELLADLPALNQCKTLQIQGLMTIPPFGLNDAKILHVFNSTSKLAEDIA
ECCCCCCCCCHHHHHHHCCCCCCCCEEEEEEEEECCCCCCCCCEEEEEECCHHHHHHHHH
EQNWDHIHMEQLSMGMSGDYQLAVQAGATMVRLGTILFGQRT
HCCCCEEEHHHHHCCCCCCEEEEECCCCHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231 [H]