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The map label for this gene is fni

Identifier: 75908675

GI number: 75908675

Start: 3055135

End: 3056187

Strand: Direct

Name: fni

Synonym: Ava_2461

Alternate gene names: 75908675

Gene position: 3055135-3056187 (Clockwise)

Preceding gene: 75908673

Following gene: 75908676

Centisome position: 47.99

GC content: 46.63

Gene sequence:

>1053_bases
GTGAACTCACCTGCTACCAGCAATTCTGCTCAAACTCAATCGCGCAAAGCAGACCATATCCGCATCTGCTTAGAAGAAGA
TGTACAATTCCGCGCCACTACCAACGGACTAGAGCGTTATCGCTTCAACCATTCTTGCTTACCAGAAATAGATCGCAACG
ATATTGATCTGAGCGCAACTTTTTTAGGTAAAAAGCTGAATGCACCTTTGTTAATCTCCTCCATGACTGGAGGAACCGAA
CAAGCGGGAATTATTAACCAGCGTTTAGCCCGACTTGCCCAAGACTATAAATTTGCAATGGGTGTCGGTTCCCAAAGGGT
AGCGTTGGAAAAACCACAAGTAGCCGACACTTTCGCCATCCGCAAGTATGCGCCTGATGTGCTGCTATTCGCTAATGTAG
GTGCGGTGCAACTTAACTATAAGTATGGTTTAGACGAATGTCTGCGTATCATCGATATGCTAGAGGCGGATGCTTTGATT
TTGCATATCAATCCCTTGCAAGAGTGCATTCAGCCCAAGGGTGATGTGAATTTTCAAGGATTGCTTGACAAGATATCGGA
GTTATGCGAAGAGTTGTCAGTACCAGTAATTGCAAAGGAAGTGGGCAATGGTATTTCCGGCGCAATGGCTAAAAAGTTGA
TCGCTGCGGGAGTACAAGTAATTGATGTGGCTGGCGCGGGTGGTACTTCCTGGGCAAAGGTAGAAGGAGAAAGGGCGGAG
AATTCTATGCAAAGGCGTTTAGGTAGAACCTTTGCAGATTGGGGAATACCCACAGCAGAGTGTATTACTAGTGTGAGAGC
GATCGCCCCCCACATTCCCTTAATTGCCTCCGGCGGTTTGCGTGATGGGCTTGATATAGCCAAAGCGATCGCTTTAGGTG
CAGATATCGCCGGTTTAGCCATGCCTTTTCTGCAAGCTGCGGTAGAGTCGGAAGCCGCTCTACAGGAATTAGCTGAGGTA
TTAATTGCAGAAATCACCACAGTATTATTTTGCACTGGCAACGCTACTTTACATCAGTTAAAACACTCTGGCAGTTTACA
GCGCCTACAATAA

Upstream 100 bases:

>100_bases
TGAAACTCGTGTCATCGGGGCTACCTACGTTCGTTCTCTCCACCTCTGTGCGTGAGTAACCCATACAATAGTAATCGCAA
GCCATAAGTCATCCCTACCA

Downstream 100 bases:

>100_bases
ATGAATAGGTAAGAATGGTTAGGCGTGATTGACTTACCACTAATGACTAAATAACTAATAACTAATGAGTAACTTCTTTA
AACAAACTCTTGCTAGCTTA

Product: isopentenyl pyrophosphate isomerase

Products: NA

Alternate protein names: IPP isomerase; Isopentenyl pyrophosphate isomerase

Number of amino acids: Translated: 350; Mature: 350

Protein sequence:

>350_residues
MNSPATSNSAQTQSRKADHIRICLEEDVQFRATTNGLERYRFNHSCLPEIDRNDIDLSATFLGKKLNAPLLISSMTGGTE
QAGIINQRLARLAQDYKFAMGVGSQRVALEKPQVADTFAIRKYAPDVLLFANVGAVQLNYKYGLDECLRIIDMLEADALI
LHINPLQECIQPKGDVNFQGLLDKISELCEELSVPVIAKEVGNGISGAMAKKLIAAGVQVIDVAGAGGTSWAKVEGERAE
NSMQRRLGRTFADWGIPTAECITSVRAIAPHIPLIASGGLRDGLDIAKAIALGADIAGLAMPFLQAAVESEAALQELAEV
LIAEITTVLFCTGNATLHQLKHSGSLQRLQ

Sequences:

>Translated_350_residues
MNSPATSNSAQTQSRKADHIRICLEEDVQFRATTNGLERYRFNHSCLPEIDRNDIDLSATFLGKKLNAPLLISSMTGGTE
QAGIINQRLARLAQDYKFAMGVGSQRVALEKPQVADTFAIRKYAPDVLLFANVGAVQLNYKYGLDECLRIIDMLEADALI
LHINPLQECIQPKGDVNFQGLLDKISELCEELSVPVIAKEVGNGISGAMAKKLIAAGVQVIDVAGAGGTSWAKVEGERAE
NSMQRRLGRTFADWGIPTAECITSVRAIAPHIPLIASGGLRDGLDIAKAIALGADIAGLAMPFLQAAVESEAALQELAEV
LIAEITTVLFCTGNATLHQLKHSGSLQRLQ
>Mature_350_residues
MNSPATSNSAQTQSRKADHIRICLEEDVQFRATTNGLERYRFNHSCLPEIDRNDIDLSATFLGKKLNAPLLISSMTGGTE
QAGIINQRLARLAQDYKFAMGVGSQRVALEKPQVADTFAIRKYAPDVLLFANVGAVQLNYKYGLDECLRIIDMLEADALI
LHINPLQECIQPKGDVNFQGLLDKISELCEELSVPVIAKEVGNGISGAMAKKLIAAGVQVIDVAGAGGTSWAKVEGERAE
NSMQRRLGRTFADWGIPTAECITSVRAIAPHIPLIASGGLRDGLDIAKAIALGADIAGLAMPFLQAAVESEAALQELAEV
LIAEITTVLFCTGNATLHQLKHSGSLQRLQ

Specific function: Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its allylic isomer, dimethylallyl diphosphate (DMAPP)

COG id: COG1304

COG function: function code C; L-lactate dehydrogenase (FMN-dependent) and related alpha-hydroxy acid dehydrogenases

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the IPP isomerase type 2 family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): IDI2_ANAVT (Q3MAB0)

Other databases:

- EMBL:   CP000117
- RefSeq:   YP_322971.1
- ProteinModelPortal:   Q3MAB0
- SMR:   Q3MAB0
- STRING:   Q3MAB0
- GeneID:   3682851
- GenomeReviews:   CP000117_GR
- KEGG:   ava:Ava_2461
- NMPDR:   fig|240292.3.peg.1518
- eggNOG:   COG1304
- HOGENOM:   HBG354479
- OMA:   GSQRAAI
- ProtClustDB:   PRK05437
- BioCyc:   AVAR240292:AVA_2461-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_00354
- InterPro:   IPR013785
- InterPro:   IPR000262
- InterPro:   IPR011179
- Gene3D:   G3DSA:3.20.20.70
- PANTHER:   PTHR10578:SF3
- PIRSF:   PIRSF003314
- TIGRFAMs:   TIGR02151

Pfam domain/function: PF01070 FMN_dh

EC number: =5.3.3.2

Molecular weight: Translated: 37632; Mature: 37632

Theoretical pI: Translated: 5.44; Mature: 5.44

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNSPATSNSAQTQSRKADHIRICLEEDVQFRATTNGLERYRFNHSCLPEIDRNDIDLSAT
CCCCCCCCCHHHHHCCCCCEEEEECCCCEEEEHHHHHHHHCCCCCCCCCCCCCCCCCHHH
FLGKKLNAPLLISSMTGGTEQAGIINQRLARLAQDYKFAMGVGSQRVALEKPQVADTFAI
HHCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCHHHHHHH
RKYAPDVLLFANVGAVQLNYKYGLDECLRIIDMLEADALILHINPLQECIQPKGDVNFQG
HHHCCCEEEEECCCEEEEEECCCHHHHHHHHHHHCCCEEEEEECHHHHHCCCCCCCCHHH
LLDKISELCEELSVPVIAKEVGNGISGAMAKKLIAAGVQVIDVAGAGGTSWAKVEGERAE
HHHHHHHHHHHCCCCHHHHHHCCCHHHHHHHHHHHCCCEEEEEECCCCCCEEEECCHHHH
NSMQRRLGRTFADWGIPTAECITSVRAIAPHIPLIASGGLRDGLDIAKAIALGADIAGLA
HHHHHHHCCHHHHCCCCHHHHHHHHHHHCCCCCEEECCCCCCHHHHHHHHHHCCCHHHHH
MPFLQAAVESEAALQELAEVLIAEITTVLFCTGNATLHQLKHSGSLQRLQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MNSPATSNSAQTQSRKADHIRICLEEDVQFRATTNGLERYRFNHSCLPEIDRNDIDLSAT
CCCCCCCCCHHHHHCCCCCEEEEECCCCEEEEHHHHHHHHCCCCCCCCCCCCCCCCCHHH
FLGKKLNAPLLISSMTGGTEQAGIINQRLARLAQDYKFAMGVGSQRVALEKPQVADTFAI
HHCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCHHHHHHH
RKYAPDVLLFANVGAVQLNYKYGLDECLRIIDMLEADALILHINPLQECIQPKGDVNFQG
HHHCCCEEEEECCCEEEEEECCCHHHHHHHHHHHCCCEEEEEECHHHHHCCCCCCCCHHH
LLDKISELCEELSVPVIAKEVGNGISGAMAKKLIAAGVQVIDVAGAGGTSWAKVEGERAE
HHHHHHHHHHHCCCCHHHHHHCCCHHHHHHHHHHHCCCEEEEEECCCCCCEEEECCHHHH
NSMQRRLGRTFADWGIPTAECITSVRAIAPHIPLIASGGLRDGLDIAKAIALGADIAGLA
HHHHHHHCCHHHHCCCCHHHHHHHHHHHCCCCCEEECCCCCCHHHHHHHHHHCCCHHHHH
MPFLQAAVESEAALQELAEVLIAEITTVLFCTGNATLHQLKHSGSLQRLQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA