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The map label for this gene is rfaQ [C]

Identifier: 75908631

GI number: 75908631

Start: 3002882

End: 3003841

Strand: Direct

Name: rfaQ [C]

Synonym: Ava_2415

Alternate gene names: 75908631

Gene position: 3002882-3003841 (Clockwise)

Preceding gene: 75908627

Following gene: 75908640

Centisome position: 47.17

GC content: 46.56

Gene sequence:

>960_bases
ATGCGAGTAGTAGCCCTTGTACCTGGCGGAATTGGCGATCAAATTCTGTTCTTTCCGACTCTAGACGATCTGAAGCGCTA
TTACCCAAACGCTCAGTTAGATGTTGTAGTGGAACCCCGGTCAAAGGCTGCCTACCGGGTGAGCAAGTCAGTAAACGACA
TACTGACCTTCGATTACAAAGACCGTAACAGCCTAGCAGATTGGGGAAATCTCGTAGGCACAATTCGTGATCGTGAGTAT
GATGTAGCGATCGCTGTTGGACAAAGCTGGTTAGTGGGTTTATTCCTCTGGTTAACAGGAATCCCCACCCGGATCGGCTA
CCAAGGTAAAGGTGCATCATTTCTGACCAAAACTGTACCCTTCAAACCATCCCAATACGCGGCGGCGGTTTACCACGACT
TGCTGCAACCCTTTGGTATCACAACCCCTACTCCAGAGTTAGCGGTAAATGTGCCAAAACCAGATATTGACTGGGCAAAT
AGCGAACAAAAACGCCTTGGGGTTAGTGAAACAGGTTACGTTTTGATTTATGGTGGCTCTAGCTGGGTATCTCAGCCTCA
AGCCTTGGATTCAATTTACCCTGTGGAAAACTGGCAGGAAATCATTCAAGACTTTCGACAAAAGCAGCCAGATTTGCCTA
TTGTAGTCATACAAGGCCCAGATGATGAGCAATTTGTGCGATCGCTCCGAGATTATTCTTTAGATATCAAGGTGACCTCC
CCTGATAACGTCGGTAAACTAACGGCGATGATTGCTGGAGCTAACTTAATGCTGACTACCGATAGTGCGCCACTGCACTT
AAGTGTGGCAGTACAAACCTATACTATTGCTCTATTTGGTTCCACAGACCCCGTCAAGTTATTACCCCAAAGCGATAAAC
TTCTGGGCATTAAATCTCCCACAGGTAGGGTGGCAGATATTTTACCCAAAGCTGTATTAGAAAAAGTTTGGGGAGGTTGA

Upstream 100 bases:

>100_bases
AATTTTGTTGGCGCAGCCTTGCCGTAGGCTATTTTGAATTTTGAATTTTGACTTTCCCGTATTCACCTAAAATAAGGAGC
GATAAGCGTCAATAAATATT

Downstream 100 bases:

>100_bases
TCGGAGGTAGGAGGCAGGGGAGGCAGGGGAGGCAGGGGGAGAACTGACTGCAAGATTTTCGCCCAATCCCAAATCCCCAA
TCCCCATTACCCCTTATCCC

Product: glycosyl transferase family protein

Products: NA

Alternate protein names: Heptosyltransferase Family Protein; ADP-HeptoseLPS Heptosyltransferase II; Lipopolysaccharide Heptosyltransferase III; Lipopolysaccharide Heptosyltransferase I; Lipopolysaccharide Heptosyltransferase; ADP-Heptose-LPS Heptosyltransferase II; Glycosyl Transferase Family Protein; Glycosyl Transferase; Heptosyltransferase; ADP-HeptoseLPS Heptosyltransferase; Heptosyltransferase Superfamily; ADP-Heptose-LPS Heptosyltransferase II RfaF; LPS Biosynthesis; Heptosyltransferase Family; Lipopolysaccharide Core Biosynthesis Glycosyl Transferase; ADP-Heptose-Lipopolysaccharide Heptosyltransferase II; Heptosyl III Transferase; LPS Heptosyltransferase II; Family Glycosyltransferase; ADP-Heptosyltransferase; O-Antigen Polymerase; Heptosyl III Transferase WaaQ; Lipopolysaccharide Core Biosynthesis Protein; Glycosyltransferase; Family 9 Glycosyl Transferase; Glycosyltransferase Family Protein

Number of amino acids: Translated: 319; Mature: 319

Protein sequence:

>319_residues
MRVVALVPGGIGDQILFFPTLDDLKRYYPNAQLDVVVEPRSKAAYRVSKSVNDILTFDYKDRNSLADWGNLVGTIRDREY
DVAIAVGQSWLVGLFLWLTGIPTRIGYQGKGASFLTKTVPFKPSQYAAAVYHDLLQPFGITTPTPELAVNVPKPDIDWAN
SEQKRLGVSETGYVLIYGGSSWVSQPQALDSIYPVENWQEIIQDFRQKQPDLPIVVIQGPDDEQFVRSLRDYSLDIKVTS
PDNVGKLTAMIAGANLMLTTDSAPLHLSVAVQTYTIALFGSTDPVKLLPQSDKLLGIKSPTGRVADILPKAVLEKVWGG

Sequences:

>Translated_319_residues
MRVVALVPGGIGDQILFFPTLDDLKRYYPNAQLDVVVEPRSKAAYRVSKSVNDILTFDYKDRNSLADWGNLVGTIRDREY
DVAIAVGQSWLVGLFLWLTGIPTRIGYQGKGASFLTKTVPFKPSQYAAAVYHDLLQPFGITTPTPELAVNVPKPDIDWAN
SEQKRLGVSETGYVLIYGGSSWVSQPQALDSIYPVENWQEIIQDFRQKQPDLPIVVIQGPDDEQFVRSLRDYSLDIKVTS
PDNVGKLTAMIAGANLMLTTDSAPLHLSVAVQTYTIALFGSTDPVKLLPQSDKLLGIKSPTGRVADILPKAVLEKVWGG
>Mature_319_residues
MRVVALVPGGIGDQILFFPTLDDLKRYYPNAQLDVVVEPRSKAAYRVSKSVNDILTFDYKDRNSLADWGNLVGTIRDREY
DVAIAVGQSWLVGLFLWLTGIPTRIGYQGKGASFLTKTVPFKPSQYAAAVYHDLLQPFGITTPTPELAVNVPKPDIDWAN
SEQKRLGVSETGYVLIYGGSSWVSQPQALDSIYPVENWQEIIQDFRQKQPDLPIVVIQGPDDEQFVRSLRDYSLDIKVTS
PDNVGKLTAMIAGANLMLTTDSAPLHLSVAVQTYTIALFGSTDPVKLLPQSDKLLGIKSPTGRVADILPKAVLEKVWGG

Specific function: Lipopolysaccharide core biosynthesis. [C]

COG id: COG0859

COG function: function code M; ADP-heptose:LPS heptosyltransferase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: 2.-.-.- [C]

Molecular weight: Translated: 35137; Mature: 35137

Theoretical pI: Translated: 5.15; Mature: 5.15

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
0.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
0.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRVVALVPGGIGDQILFFPTLDDLKRYYPNAQLDVVVEPRSKAAYRVSKSVNDILTFDYK
CEEEEEECCCCCCCEEEECCHHHHHHHCCCCEEEEEECCCCCHHHHHHCCCCCEEEEECC
DRNSLADWGNLVGTIRDREYDVAIAVGQSWLVGLFLWLTGIPTRIGYQGKGASFLTKTVP
CCCCHHHHHHHHEEECCCCEEEEEEECCHHHHHHHHHHHCCCHHCCCCCCCCCEEEECCC
FKPSQYAAAVYHDLLQPFGITTPTPELAVNVPKPDIDWANSEQKRLGVSETGYVLIYGGS
CCCCHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCCCCHHHHCCCCCCCEEEEECCC
SWVSQPQALDSIYPVENWQEIIQDFRQKQPDLPIVVIQGPDDEQFVRSLRDYSLDIKVTS
HHCCCCHHHHCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHCCEEEEEEEC
PDNVGKLTAMIAGANLMLTTDSAPLHLSVAVQTYTIALFGSTDPVKLLPQSDKLLGIKSP
CCCCCCEEEEEECCEEEEEECCCCEEEEEEEEEEEEEEECCCCCEEECCCCCCEEEECCC
TGRVADILPKAVLEKVWGG
CCHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MRVVALVPGGIGDQILFFPTLDDLKRYYPNAQLDVVVEPRSKAAYRVSKSVNDILTFDYK
CEEEEEECCCCCCCEEEECCHHHHHHHCCCCEEEEEECCCCCHHHHHHCCCCCEEEEECC
DRNSLADWGNLVGTIRDREYDVAIAVGQSWLVGLFLWLTGIPTRIGYQGKGASFLTKTVP
CCCCHHHHHHHHEEECCCCEEEEEEECCHHHHHHHHHHHCCCHHCCCCCCCCCEEEECCC
FKPSQYAAAVYHDLLQPFGITTPTPELAVNVPKPDIDWANSEQKRLGVSETGYVLIYGGS
CCCCHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCCCCHHHHCCCCCCCEEEEECCC
SWVSQPQALDSIYPVENWQEIIQDFRQKQPDLPIVVIQGPDDEQFVRSLRDYSLDIKVTS
HHCCCCHHHHCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHCCEEEEEEEC
PDNVGKLTAMIAGANLMLTTDSAPLHLSVAVQTYTIALFGSTDPVKLLPQSDKLLGIKSP
CCCCCCEEEEEECCEEEEEECCCCEEEEEEEEEEEEEEECCCCCEEECCCCCCEEEECCC
TGRVADILPKAVLEKVWGG
CCHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Glycosyltransferases; Transferring other glycosyl groups [C]

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA