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The map label for this gene is yrvJ [H]

Identifier: 75908485

GI number: 75908485

Start: 2823814

End: 2825571

Strand: Direct

Name: yrvJ [H]

Synonym: Ava_2268

Alternate gene names: 75908485

Gene position: 2823814-2825571 (Clockwise)

Preceding gene: 75908482

Following gene: 75908494

Centisome position: 44.36

GC content: 45.34

Gene sequence:

>1758_bases
GTGAAAAAAGTTCTCATCCCAGTAATATTAAGCTGCGTTGTCACCTCCTCCGTTGCTTTGTCTTCCTCACCTCTCAAAGT
TGTTTATCCGCCGACAAACCACCAGACTAGTGCAGAAAAAATCTTTTTTATTGGTACAGCACCACCAAACGGCCAAGTTC
TCGTTAATGGTAAGCCAATTAATCGCAGTCGGTCTGGCCATTTTGCCCCAAGTTTTCCCTTACAGTTAGGAGAGAATATC
TTCACAGTACGTCACCAAAATCAAGAGCTTCAGATTAAGGTGACAAGGCTGAGTAATCAACCAGAGCTACCACAGGGTTT
AGCATTTGCTAAAGGTTCTCTCACACCAACTGCCGACATTGCCAGACTACCCGGAGAACTAATTTGTTTTAGCGCTATTG
CACCTCCTAACGCCAGTGTCTCTGTGAAACTGGGTAATCAAACTGTGGCACTTTTACCTCAACCACAACAAGCAATACTA
CCAAGTAATTTGGCTGCGCTCACTGGACAAAATCAACCCACTACCCAGTCTATCCCAGGAAAGTATGAGGGTTGCACAAC
AGTATCAGTTGCAACAGATTTGGAACAACCTCAATACCAACTGACACTTAATGGTAAGACGATAACTCAACCAAGTGCTG
GCAAAATTACAATTCTCTCACCCACGCAGTTACCTGTAGCTGAGGTGGTAGCAGACGCAGGAGTTGCCCGGACTGGTCCT
AGTACCGATTTTTCTCGACTTACACCACTGCCTAAAGGAACACGAGCCACTGTCACAGGTAAAGAAGGTGAATGGTTTCG
CCTAGAATATGGTGCTTGGATTAATAGTCAGGAAACTCGCATTCTTCCAGGAAGCGTTCCGCCACGGACTGTTATACGTA
GTGTCGGATATCGAAGACTTCCAGGTACGACAGAAATGCTTTTCCCTCTCCAAACCCCTGTACCTGTGAGTGTGCAACAA
GGAGAAAAAACTTTCACCCTGACACTCTACAACACCACTGCCCAAACAGATATTATTCGCCTTGATGATGACCCTCTAAT
TTCTCGTCTAGATTGGCAGCAAATAGCCTCAGGAGAGGTAAAATACACCTTCAACCTGAAAAAAGCTCAACAGTGGGGAT
ATAAGCTGAGATACGACGGTACAACCCTGGTGTTAGCTTTACGCCATGCGCCTGTTATCAGGCAGAATAGGCAAAAGCCC
TTATCTGGTATCAAGATTCTACTCGATCCTGGTCATGGTGGTAAAGAATCTGGCGCAACTGGGCCGACTGGATATTTAGA
AAAGGACGTAAATCTGGCAGTATCTAAGTTATTGCGTGATGAATTGCTCAAATTAGGGGCAAATGTAGTGATGACTAGGG
ATGATGATCGGGATGTGTCTTTGCCAGAGCGTCAAGCAATTATCAATCGAGAAGAACCAGCGATCGCTCTTTCCGTCCAT
TACAATTCCCTACCCGATAATGGTGATGCGGAAAACACTAAGGGAGTTGGTACATTTTGGTACAATGCTCAAGCCCATAG
TCTAGCAGTATTTATGCACAATTACCTTGTGAATAAACTCCGTAGACCTTCTTATGGTGTGTTTTGGAATAACCTGGCAC
TCACACGCCCCGCCGCCGCACCCTCAGTATTATTAGAGTTGGGTTTTATGAGCAATCCCGATGAATTTGAGTGGGTGACA
AACCCCCAAGAGCAGAAGAAGTTAGCGGAGGTTTTGGCTGAAGGGATAACCGAGTGGTTTAGGAGTGTTAAATCCTAA

Upstream 100 bases:

>100_bases
TCATAGTAGTTTGAATTTTTATCAACTGCTAACGATACCTTCCAAAATCCATCTCGTCATTGTGCCACAGTCACATAGTG
AATACTTCTGTGATACTGCT

Downstream 100 bases:

>100_bases
AACGCACACAGTAGGGAGTGGAAACTAGAGGAAATGAGGAAACGGTGAACAGTTATCAAAACAAAAAATACTGATAACTG
TTCATTGTTGACTGAATGAA

Product: cell wall hydrolase/autolysin

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 585; Mature: 585

Protein sequence:

>585_residues
MKKVLIPVILSCVVTSSVALSSSPLKVVYPPTNHQTSAEKIFFIGTAPPNGQVLVNGKPINRSRSGHFAPSFPLQLGENI
FTVRHQNQELQIKVTRLSNQPELPQGLAFAKGSLTPTADIARLPGELICFSAIAPPNASVSVKLGNQTVALLPQPQQAIL
PSNLAALTGQNQPTTQSIPGKYEGCTTVSVATDLEQPQYQLTLNGKTITQPSAGKITILSPTQLPVAEVVADAGVARTGP
STDFSRLTPLPKGTRATVTGKEGEWFRLEYGAWINSQETRILPGSVPPRTVIRSVGYRRLPGTTEMLFPLQTPVPVSVQQ
GEKTFTLTLYNTTAQTDIIRLDDDPLISRLDWQQIASGEVKYTFNLKKAQQWGYKLRYDGTTLVLALRHAPVIRQNRQKP
LSGIKILLDPGHGGKESGATGPTGYLEKDVNLAVSKLLRDELLKLGANVVMTRDDDRDVSLPERQAIINREEPAIALSVH
YNSLPDNGDAENTKGVGTFWYNAQAHSLAVFMHNYLVNKLRRPSYGVFWNNLALTRPAAAPSVLLELGFMSNPDEFEWVT
NPQEQKKLAEVLAEGITEWFRSVKS

Sequences:

>Translated_585_residues
MKKVLIPVILSCVVTSSVALSSSPLKVVYPPTNHQTSAEKIFFIGTAPPNGQVLVNGKPINRSRSGHFAPSFPLQLGENI
FTVRHQNQELQIKVTRLSNQPELPQGLAFAKGSLTPTADIARLPGELICFSAIAPPNASVSVKLGNQTVALLPQPQQAIL
PSNLAALTGQNQPTTQSIPGKYEGCTTVSVATDLEQPQYQLTLNGKTITQPSAGKITILSPTQLPVAEVVADAGVARTGP
STDFSRLTPLPKGTRATVTGKEGEWFRLEYGAWINSQETRILPGSVPPRTVIRSVGYRRLPGTTEMLFPLQTPVPVSVQQ
GEKTFTLTLYNTTAQTDIIRLDDDPLISRLDWQQIASGEVKYTFNLKKAQQWGYKLRYDGTTLVLALRHAPVIRQNRQKP
LSGIKILLDPGHGGKESGATGPTGYLEKDVNLAVSKLLRDELLKLGANVVMTRDDDRDVSLPERQAIINREEPAIALSVH
YNSLPDNGDAENTKGVGTFWYNAQAHSLAVFMHNYLVNKLRRPSYGVFWNNLALTRPAAAPSVLLELGFMSNPDEFEWVT
NPQEQKKLAEVLAEGITEWFRSVKS
>Mature_585_residues
MKKVLIPVILSCVVTSSVALSSSPLKVVYPPTNHQTSAEKIFFIGTAPPNGQVLVNGKPINRSRSGHFAPSFPLQLGENI
FTVRHQNQELQIKVTRLSNQPELPQGLAFAKGSLTPTADIARLPGELICFSAIAPPNASVSVKLGNQTVALLPQPQQAIL
PSNLAALTGQNQPTTQSIPGKYEGCTTVSVATDLEQPQYQLTLNGKTITQPSAGKITILSPTQLPVAEVVADAGVARTGP
STDFSRLTPLPKGTRATVTGKEGEWFRLEYGAWINSQETRILPGSVPPRTVIRSVGYRRLPGTTEMLFPLQTPVPVSVQQ
GEKTFTLTLYNTTAQTDIIRLDDDPLISRLDWQQIASGEVKYTFNLKKAQQWGYKLRYDGTTLVLALRHAPVIRQNRQKP
LSGIKILLDPGHGGKESGATGPTGYLEKDVNLAVSKLLRDELLKLGANVVMTRDDDRDVSLPERQAIINREEPAIALSVH
YNSLPDNGDAENTKGVGTFWYNAQAHSLAVFMHNYLVNKLRRPSYGVFWNNLALTRPAAAPSVLLELGFMSNPDEFEWVT
NPQEQKKLAEVLAEGITEWFRSVKS

Specific function: Probably involved in cell-wall metabolism [H]

COG id: COG0860

COG function: function code M; N-acetylmuramoyl-L-alanine amidase

Gene ontology:

Cell location: Secreted, cell wall [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the N-acetylmuramoyl-L-alanine amidase 3 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002508
- InterPro:   IPR017293
- InterPro:   IPR003646
- InterPro:   IPR013247 [H]

Pfam domain/function: PF01520 Amidase_3; PF08239 SH3_3 [H]

EC number: =3.5.1.28 [H]

Molecular weight: Translated: 63957; Mature: 63957

Theoretical pI: Translated: 9.62; Mature: 9.62

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKVLIPVILSCVVTSSVALSSSPLKVVYPPTNHQTSAEKIFFIGTAPPNGQVLVNGKPI
CCCCHHHHHHHHHHHHHHEECCCCEEEEECCCCCCCCCCEEEEEECCCCCCEEEECCCCC
NRSRSGHFAPSFPLQLGENIFTVRHQNQELQIKVTRLSNQPELPQGLAFAKGSLTPTADI
CCCCCCCCCCCCCHHHCCCEEEEEECCCEEEEEEEEECCCCCCCCCCEECCCCCCCCHHH
ARLPGELICFSAIAPPNASVSVKLGNQTVALLPQPQQAILPSNLAALTGQNQPTTQSIPG
HHCCCCEEEEEECCCCCCEEEEEECCEEEEEECCCHHHHCCCCHHEECCCCCCCCCCCCC
KYEGCTTVSVATDLEQPQYQLTLNGKTITQPSAGKITILSPTQLPVAEVVADAGVARTGP
CCCCEEEEEEEECCCCCCEEEEECCEEECCCCCCEEEEECCCCCCHHHHHHHCCCCCCCC
STDFSRLTPLPKGTRATVTGKEGEWFRLEYGAWINSQETRILPGSVPPRTVIRSVGYRRL
CCCHHHCCCCCCCCEEEEECCCCCEEEEEECCEECCCCCEEECCCCCHHHHHHHCCCEEC
PGTTEMLFPLQTPVPVSVQQGEKTFTLTLYNTTAQTDIIRLDDDPLISRLDWQQIASGEV
CCCCEEEEECCCCCCCEEECCCEEEEEEEEECCCCCEEEEECCCHHHHHCCHHHHCCCCE
KYTFNLKKAQQWGYKLRYDGTTLVLALRHAPVIRQNRQKPLSGIKILLDPGHGGKESGAT
EEEEEEHHHHHCCEEEEECCCEEEEEEECCCHHHHCCCCCCCCEEEEEECCCCCCCCCCC
GPTGYLEKDVNLAVSKLLRDELLKLGANVVMTRDDDRDVSLPERQAIINREEPAIALSVH
CCCCCHHCHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCHHHHHCCCCCCEEEEEEE
YNSLPDNGDAENTKGVGTFWYNAQAHSLAVFMHNYLVNKLRRPSYGVFWNNLALTRPAAA
ECCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHCCCCCCEEECCEEEECCCCC
PSVLLELGFMSNPDEFEWVTNPQEQKKLAEVLAEGITEWFRSVKS
HHHHHEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MKKVLIPVILSCVVTSSVALSSSPLKVVYPPTNHQTSAEKIFFIGTAPPNGQVLVNGKPI
CCCCHHHHHHHHHHHHHHEECCCCEEEEECCCCCCCCCCEEEEEECCCCCCEEEECCCCC
NRSRSGHFAPSFPLQLGENIFTVRHQNQELQIKVTRLSNQPELPQGLAFAKGSLTPTADI
CCCCCCCCCCCCCHHHCCCEEEEEECCCEEEEEEEEECCCCCCCCCCEECCCCCCCCHHH
ARLPGELICFSAIAPPNASVSVKLGNQTVALLPQPQQAILPSNLAALTGQNQPTTQSIPG
HHCCCCEEEEEECCCCCCEEEEEECCEEEEEECCCHHHHCCCCHHEECCCCCCCCCCCCC
KYEGCTTVSVATDLEQPQYQLTLNGKTITQPSAGKITILSPTQLPVAEVVADAGVARTGP
CCCCEEEEEEEECCCCCCEEEEECCEEECCCCCCEEEEECCCCCCHHHHHHHCCCCCCCC
STDFSRLTPLPKGTRATVTGKEGEWFRLEYGAWINSQETRILPGSVPPRTVIRSVGYRRL
CCCHHHCCCCCCCCEEEEECCCCCEEEEEECCEECCCCCEEECCCCCHHHHHHHCCCEEC
PGTTEMLFPLQTPVPVSVQQGEKTFTLTLYNTTAQTDIIRLDDDPLISRLDWQQIASGEV
CCCCEEEEECCCCCCCEEECCCEEEEEEEEECCCCCEEEEECCCHHHHHCCHHHHCCCCE
KYTFNLKKAQQWGYKLRYDGTTLVLALRHAPVIRQNRQKPLSGIKILLDPGHGGKESGAT
EEEEEEHHHHHCCEEEEECCCEEEEEEECCCHHHHCCCCCCCCEEEEEECCCCCCCCCCC
GPTGYLEKDVNLAVSKLLRDELLKLGANVVMTRDDDRDVSLPERQAIINREEPAIALSVH
CCCCCHHCHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCHHHHHCCCCCCEEEEEEE
YNSLPDNGDAENTKGVGTFWYNAQAHSLAVFMHNYLVNKLRRPSYGVFWNNLALTRPAAA
ECCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHCCCCCCEEECCEEEECCCCC
PSVLLELGFMSNPDEFEWVTNPQEQKKLAEVLAEGITEWFRSVKS
HHHHHEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]