Click here to switch to the map view.

The map label for this gene is 75908404

Identifier: 75908404

GI number: 75908404

Start: 2708819

End: 2709493

Strand: Direct

Name: 75908404

Synonym: Ava_2185

Alternate gene names: NA

Gene position: 2708819-2709493 (Clockwise)

Preceding gene: 75908403

Following gene: 75908405

Centisome position: 42.55

GC content: 33.78

Gene sequence:

>675_bases
ATGGTTTCCCAACTTCAGCAACGAAACGATTATTCATTTGCAGACTATAGCAACTCGTGTTGGTTCATTGACTTTGCTTT
ATTGGATATAAATATTGCTGACACAAATGGTTCATTGATTGGAAGACCCTATTTAACTACAGCTATAGATATTTATTCTC
AATGCTGTATGGGTTTATTTTTGAGTTTAAAATCACCAAATCATCAAGCGATAACTCAAGCCTTGCGTCACGCAATTTTA
CCGAAAAGTTACGATTCAGAATATAACTTACGTCATGAGTGGATAACCTACGGCATCCCGGCAGGCTTACAACTCAATAA
TAGCAGTCTTACAAATTCCTATTTATTACAAGATAAATTGTCTCAACTAGGAATTAGTATATATTCTCCCAAGTCTGGCT
CAAGATTGAATGATTCTTTTACTGAAAAATTATTTTCTGAGATAAATAGATACCTAAGTTCAGATGCACTATCAAATCAA
ATATCTACTGACAATAATTCTTTCCTGACTTTGGGAGTTTTAGAAAAAATATTAGTGCTTTACTTCGTTGACAATTTTAA
TCAACAAATTCATAATGATTCCTCGCATCAAACACGTCAAGAACGGTGGGAATCAGGCTTAGGTTCTGCGTCTAAGATGA
TTGAAGAAAACTTTATCCACACATTGTTAACTTAA

Upstream 100 bases:

>100_bases
AAATTGAGTCAATCCTCTGACCATAATCTCCAAGCTCAGAAGATATTTGATGCTTTACCTAATTAGCCCAAACTGCAAAA
TCGATTTTTGGTGAAAAATT

Downstream 100 bases:

>100_bases
CAATGTACCAACAATTACAAGATTCTTATCCTGCAAACGACGATGGTGCTGTTGAATTACAAAAGCACCAAAATTCTACG
AAAACCTCTTCTAAACTGCC

Product: transposase

Products: NA

Alternate protein names: Integrase Catalytic Subunit; Transposase; Integrase Catalytic Region; Integrase

Number of amino acids: Translated: 224; Mature: 224

Protein sequence:

>224_residues
MVSQLQQRNDYSFADYSNSCWFIDFALLDINIADTNGSLIGRPYLTTAIDIYSQCCMGLFLSLKSPNHQAITQALRHAIL
PKSYDSEYNLRHEWITYGIPAGLQLNNSSLTNSYLLQDKLSQLGISIYSPKSGSRLNDSFTEKLFSEINRYLSSDALSNQ
ISTDNNSFLTLGVLEKILVLYFVDNFNQQIHNDSSHQTRQERWESGLGSASKMIEENFIHTLLT

Sequences:

>Translated_224_residues
MVSQLQQRNDYSFADYSNSCWFIDFALLDINIADTNGSLIGRPYLTTAIDIYSQCCMGLFLSLKSPNHQAITQALRHAIL
PKSYDSEYNLRHEWITYGIPAGLQLNNSSLTNSYLLQDKLSQLGISIYSPKSGSRLNDSFTEKLFSEINRYLSSDALSNQ
ISTDNNSFLTLGVLEKILVLYFVDNFNQQIHNDSSHQTRQERWESGLGSASKMIEENFIHTLLT
>Mature_224_residues
MVSQLQQRNDYSFADYSNSCWFIDFALLDINIADTNGSLIGRPYLTTAIDIYSQCCMGLFLSLKSPNHQAITQALRHAIL
PKSYDSEYNLRHEWITYGIPAGLQLNNSSLTNSYLLQDKLSQLGISIYSPKSGSRLNDSFTEKLFSEINRYLSSDALSNQ
ISTDNNSFLTLGVLEKILVLYFVDNFNQQIHNDSSHQTRQERWESGLGSASKMIEENFIHTLLT

Specific function: Unknown

COG id: COG2801

COG function: function code L; Transposase and inactivated derivatives

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 25443; Mature: 25443

Theoretical pI: Translated: 5.21; Mature: 5.21

Prosite motif: PS50994 INTEGRASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVSQLQQRNDYSFADYSNSCWFIDFALLDINIADTNGSLIGRPYLTTAIDIYSQCCMGLF
CCCCHHHCCCCCCCCCCCCEEEEEEEEEEEEEECCCCCEECCCHHHHHHHHHHHHHHHHH
LSLKSPNHQAITQALRHAILPKSYDSEYNLRHEWITYGIPAGLQLNNSSLTNSYLLQDKL
HHCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHEEEECCCCCCEECCCCCCHHHHHHHHH
SQLGISIYSPKSGSRLNDSFTEKLFSEINRYLSSDALSNQISTDNNSFLTLGVLEKILVL
HHCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEHHHHHHHHHH
YFVDNFNQQIHNDSSHQTRQERWESGLGSASKMIEENFIHTLLT
HHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MVSQLQQRNDYSFADYSNSCWFIDFALLDINIADTNGSLIGRPYLTTAIDIYSQCCMGLF
CCCCHHHCCCCCCCCCCCCEEEEEEEEEEEEEECCCCCEECCCHHHHHHHHHHHHHHHHH
LSLKSPNHQAITQALRHAILPKSYDSEYNLRHEWITYGIPAGLQLNNSSLTNSYLLQDKL
HHCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHEEEECCCCCCEECCCCCCHHHHHHHHH
SQLGISIYSPKSGSRLNDSFTEKLFSEINRYLSSDALSNQISTDNNSFLTLGVLEKILVL
HHCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEHHHHHHHHHH
YFVDNFNQQIHNDSSHQTRQERWESGLGSASKMIEENFIHTLLT
HHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA