| Definition | Nitrobacter winogradskyi Nb-255, complete genome. |
|---|---|
| Accession | NC_007406 |
| Length | 3,402,093 |
Click here to switch to the map view.
The map label for this gene is prmA [H]
Identifier: 75676552
GI number: 75676552
Start: 2587694
End: 2588659
Strand: Direct
Name: prmA [H]
Synonym: Nwi_2367
Alternate gene names: 75676552
Gene position: 2587694-2588659 (Clockwise)
Preceding gene: 75676551
Following gene: 75676553
Centisome position: 76.06
GC content: 68.43
Gene sequence:
>966_bases TTGCCAAATATATCTGAGTTAAGGTCCTCCGGGATCCTTACCCTTCCCCGGATATGCTCTGGACTGCCGATGACCACTGA AATTTCGCCGGCGACGAGCCGCGCCGCCTTCGCCATCGGGGCGGAGCAAGTCGCGCGGCGGGCCGTCGATTTCCTGAGCG AGAGCCTGGAGGACGGCGAAACCGCGGTGACCGCGTTCGAACGCAGCGACGGCTGCTGGAGCGTCGCGGTTCACTTCGCC GACCCGCCGGATGAAGCGCGTGTCCGCGCGCTGGTCGCTCTCGCCGCCGGCGATGACGTCGCCCGGACCGTCGTCTTTGA CACCATCGCCGCCAGGGATTGGGTCGAGGCCAGCCTCGAAGGGTTGGCGCCGGTCCCCGCCGGGCGCTTCATCGTCCACG GCCGGCATGACCGCGACCGCGTGCCGCCGAACAAACTGGCGATCGAGATCGAGGCCGCGCTGGCGTTCGGCACCGGCCAT CACGGCACCACCCGAGGCTGCCTGCTGCTCCTCGATCACGTTCTCCGCGCCAGGATGCCGCGACGCGTCCTCGATCTTGG CGCAGGGACAGGTGTTCTGGCCATCGCCGCCGCCAAGGCGCTGCACCGGAGCGTGCTGGCCAGCGATATCGACCCGCGCT CGGCGACGGTGGCGCGGGAAAACGCTACGCTGAACGGAGTCGGCAGTCTTGTCTGGTCGATCCGCGCGACCGGCTTTTCC GCGCCGTTGTTTCGCGCGCGCGCGCCGTTCGATCTGGTGCTGGCGAACATTCTCGCCAACCCGCTGCGGCGGATGGCTCC GGCCATGGCGCGCCATCTCGCGCCCGAAGCCATGGTGATCCTCTCCGGGCTGCTGCCGCAGCATACCCGCGGCGTCATCG CGGCCTACCGCGCGCAGGGGCTGGTGTTGATCCGGCAGTTGCGGATCGACGGATGGTGCAGCCTGCTGATGCAGAACAGA GGGTGA
Upstream 100 bases:
>100_bases TGGGAGAGTGGCGGCATCATCGCGGTTCTGAAAGGCTGGCTTGTGATGGTATTCGCTATCCTGCTGGTCGCCGGACCGGC CTATGGAGTCGGCTATCTCA
Downstream 100 bases:
>100_bases CTCGCCGGCTTGTTGCATGGCTGCACGCGAACGGGGTCCACTTCGCTCGAAAACGCTATATGATGCCGGCAATGTTCGAG GCCTATTTCCAGACATTCGA
Product: ribosomal L11 methyltransferase
Products: NA
Alternate protein names: L11 Mtase [H]
Number of amino acids: Translated: 321; Mature: 320
Protein sequence:
>321_residues MPNISELRSSGILTLPRICSGLPMTTEISPATSRAAFAIGAEQVARRAVDFLSESLEDGETAVTAFERSDGCWSVAVHFA DPPDEARVRALVALAAGDDVARTVVFDTIAARDWVEASLEGLAPVPAGRFIVHGRHDRDRVPPNKLAIEIEAALAFGTGH HGTTRGCLLLLDHVLRARMPRRVLDLGAGTGVLAIAAAKALHRSVLASDIDPRSATVARENATLNGVGSLVWSIRATGFS APLFRARAPFDLVLANILANPLRRMAPAMARHLAPEAMVILSGLLPQHTRGVIAAYRAQGLVLIRQLRIDGWCSLLMQNR G
Sequences:
>Translated_321_residues MPNISELRSSGILTLPRICSGLPMTTEISPATSRAAFAIGAEQVARRAVDFLSESLEDGETAVTAFERSDGCWSVAVHFA DPPDEARVRALVALAAGDDVARTVVFDTIAARDWVEASLEGLAPVPAGRFIVHGRHDRDRVPPNKLAIEIEAALAFGTGH HGTTRGCLLLLDHVLRARMPRRVLDLGAGTGVLAIAAAKALHRSVLASDIDPRSATVARENATLNGVGSLVWSIRATGFS APLFRARAPFDLVLANILANPLRRMAPAMARHLAPEAMVILSGLLPQHTRGVIAAYRAQGLVLIRQLRIDGWCSLLMQNR G >Mature_320_residues PNISELRSSGILTLPRICSGLPMTTEISPATSRAAFAIGAEQVARRAVDFLSESLEDGETAVTAFERSDGCWSVAVHFAD PPDEARVRALVALAAGDDVARTVVFDTIAARDWVEASLEGLAPVPAGRFIVHGRHDRDRVPPNKLAIEIEAALAFGTGHH GTTRGCLLLLDHVLRARMPRRVLDLGAGTGVLAIAAAKALHRSVLASDIDPRSATVARENATLNGVGSLVWSIRATGFSA PLFRARAPFDLVLANILANPLRRMAPAMARHLAPEAMVILSGLLPQHTRGVIAAYRAQGLVLIRQLRIDGWCSLLMQNRG
Specific function: Methylates ribosomal protein L11 [H]
COG id: COG2264
COG function: function code J; Ribosomal protein L11 methylase
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the methyltransferase superfamily. PrmA family [H]
Homologues:
Organism=Escherichia coli, GI2367208, Length=210, Percent_Identity=31.4285714285714, Blast_Score=80, Evalue=2e-16,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR010456 - InterPro: IPR004498 [H]
Pfam domain/function: PF06325 PrmA [H]
EC number: 2.1.1.- [C]
Molecular weight: Translated: 34294; Mature: 34163
Theoretical pI: Translated: 9.07; Mature: 9.07
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPNISELRSSGILTLPRICSGLPMTTEISPATSRAAFAIGAEQVARRAVDFLSESLEDGE CCCHHHHHHCCCEEHHHHHCCCCCCCCCCCCCCHHHHHHCHHHHHHHHHHHHHHHHCCCC TAVTAFERSDGCWSVAVHFADPPDEARVRALVALAAGDDVARTVVFDTIAARDWVEASLE HHEEEEECCCCEEEEEEEECCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH GLAPVPAGRFIVHGRHDRDRVPPNKLAIEIEAALAFGTGHHGTTRGCLLLLDHVLRARMP CCCCCCCCCEEEECCCCCCCCCCCCEEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHCC RRVLDLGAGTGVLAIAAAKALHRSVLASDIDPRSATVARENATLNGVGSLVWSIRATGFS HHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCHHHHHHHHHHHHHCCCC APLFRARAPFDLVLANILANPLRRMAPAMARHLAPEAMVILSGLLPQHTRGVIAAYRAQG CCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHHHHHH LVLIRQLRIDGWCSLLMQNRG HHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure PNISELRSSGILTLPRICSGLPMTTEISPATSRAAFAIGAEQVARRAVDFLSESLEDGE CCHHHHHHCCCEEHHHHHCCCCCCCCCCCCCCHHHHHHCHHHHHHHHHHHHHHHHCCCC TAVTAFERSDGCWSVAVHFADPPDEARVRALVALAAGDDVARTVVFDTIAARDWVEASLE HHEEEEECCCCEEEEEEEECCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH GLAPVPAGRFIVHGRHDRDRVPPNKLAIEIEAALAFGTGHHGTTRGCLLLLDHVLRARMP CCCCCCCCCEEEECCCCCCCCCCCCEEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHCC RRVLDLGAGTGVLAIAAAKALHRSVLASDIDPRSATVARENATLNGVGSLVWSIRATGFS HHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCHHHHHHHHHHHHHCCCC APLFRARAPFDLVLANILANPLRRMAPAMARHLAPEAMVILSGLLPQHTRGVIAAYRAQG CCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHHHHHH LVLIRQLRIDGWCSLLMQNRG HHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: Catalyzes the methylation of ribosomal protein L11 by S-adenosyl methionine [C]
General reaction: Transferases; Transferring one-carbon groups; Methyltransferases [C]
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 12597275 [H]