| Definition | Nitrobacter winogradskyi Nb-255, complete genome. |
|---|---|
| Accession | NC_007406 |
| Length | 3,402,093 |
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The map label for this gene is pepQ [H]
Identifier: 75676553
GI number: 75676553
Start: 2588626
End: 2590560
Strand: Direct
Name: pepQ [H]
Synonym: Nwi_2368
Alternate gene names: 75676553
Gene position: 2588626-2590560 (Clockwise)
Preceding gene: 75676552
Following gene: 75676554
Centisome position: 76.09
GC content: 67.86
Gene sequence:
>1935_bases ATGGTGCAGCCTGCTGATGCAGAACAGAGGGTGACTCGCCGGCTTGTTGCATGGCTGCACGCGAACGGGGTCCACTTCGC TCGAAAACGCTATATGATGCCGGCAATGTTCGAGGCCTATTTCCAGACATTCGAGGATCCCGAAGGTGGCGTCGCGCTGA CCGCCCGCCTCGCCGCGTTTCGCGAGGAGCTGGCGCGGCGGCAACTGACCGGATTTGTGATCCCTCGTGCCGACCGGCAG CAGAACGAGTACGTCCCGCCTTCCGAGGAGCGGCTGGCATGGCTCACCGGCTTCACCGGATCGGCCGGCCTTGCGATCGT GCTCGCGACGAAAGCCGCGGTGTTCGTCGACGGCCGCTACACCTTGCAGGCGGCGCAACAGGTGGATGTCCGGGCCTGGA GCATCGCCTCGCTGGTCGATCCGCCGCCGGAGAGCTGGCTGGCGGAGCATCTCGCGGCCGGCGACCGCCTCGGCTACGAT CCCTGGCTCCACACCTCGGCGGCGGTAGAGCGTCTTGCAAAGGCCTGTGCGAAAGCCGGCGCCGAACTGGTGCCGGTCGA CAGCAACCCGATCGACAGCGTCTGGACCGACCGCCCCGCGCCGCCGCTCGGCCCGGTCACGATCCACGACGCGGCATTCG CCGGCGAAGCGGAGGCCGACAAGCTCGCGCGGATCCGCGCCGAGATGACAAAGCTCGGCGTCGATGCGCTGGTGCTGTCG GATTCCCACGCGGTGGCGTGGACCTTCAACATCCGCGGCGCGGATGTCTCGCATACGCCGCTGCCTTTGTCCTACGCGCT GGCGCCGAAGGACGGCCGCCCCACGATCTTCATCGACCGCCGCAAACTCTCCGACAGCGCGCGCTCTCATCTCGAACGCA ACGCCGATGTGCGCGAGCCGGATGAACTGACCGACGCGCTGACGAGGACGGCCCAATCCGGCGCGGCGATCGCGCTCGAC AAAGCCACCGCCGCCGACGCATTGAGCCGCCTGATCACGTCCGCCGGCGGCAAGCCGGTGGGCGGCAACGATCCAGTCGC GCTGTTGAAGGCAGTAAAGAACCCGACCGAGATCGCGGGCGCGCGCGCCGCGCATCGGCGCGACGCCGTGGCGCTGGCGC GGTTTCTCGCCTGGATCGACCGCGAGGCGCCGAAGGGCACGCTGACCGAAATCGACGCGGTCGAGGCGCTGGAGACTTTT CGCCGCGAGACCGGCGCGCTGAAGGACGTCTCCTTTCCCACCATCTCGGGCACCGGGCCGAACGGCGCCATCGTTCACTA CCGCGTCACCCGCAAGAGCAACCGCCGCATCGTACCCGGTGACCTGCTGCTGATCGACTCCGGCGCGCAATACGAGGACG GCACCACCGACGTCACCCGCACCATCGCGATCGGCGATCCGACCGACGAAATGCGCGACCGCTTCACCCGCGTGCTGCGC GGCCATATCGCCATCGCCCGCGCGGTGTTTCCCGACGGCGCCACCGGCGCGCAACTCGATACGCTGGCGCGGCAGTTTCT CTGGCAGGCCGGCCTCGACTTCGAGCACGGCACCGGCCACGGCGTCGGCAGCTATCTGTCGGTGCATGAAGGCCCGGCGC GGATTTCGAAGCTTGGCACCACGCCGCTCAGGCGCGGCATGATCCTGTCCAACGAGCCGGGCTATTACAAGCGCGACGCG TTCGGCATCCGGATCGAAAACCTGGTGCTGGTGACGGAAGCCGGGATTGCCGGCGCTGAGAAGCCCATGAACAGCTTCGA GACCCTGACGCTGGCCCCGATCGACCGCCGCCTGATCGATCACCGCATCAGCAAGAAAGAGGTGGCGTGGCTCAACGACT ATCACGCCCGCGTCCGCCGCGAGGTGCGCCCGCATCTCGACGAGGCCACGAAACTCTGGCTCGACGCCGCGACCGAGCCG TTTTCTCTGGAATAG
Upstream 100 bases:
>100_bases TGGTGATCCTCTCCGGGCTGCTGCCGCAGCATACCCGCGGCGTCATCGCGGCCTACCGCGCGCAGGGGCTGGTGTTGATC CGGCAGTTGCGGATCGACGG
Downstream 100 bases:
>100_bases CGCGCGCAGATCGTTGCGAGCTTCCTTGCCTGGAGCAGGACAAACAGAGCTGTTGCACCGTCCACCGATCAAGCAAACCT TGCTCGATGCTATCAAGAAT
Product: peptidase M24
Products: NA
Alternate protein names: X-Pro dipeptidase; Imidodipeptidase; Proline dipeptidase; Prolidase [H]
Number of amino acids: Translated: 644; Mature: 644
Protein sequence:
>644_residues MVQPADAEQRVTRRLVAWLHANGVHFARKRYMMPAMFEAYFQTFEDPEGGVALTARLAAFREELARRQLTGFVIPRADRQ QNEYVPPSEERLAWLTGFTGSAGLAIVLATKAAVFVDGRYTLQAAQQVDVRAWSIASLVDPPPESWLAEHLAAGDRLGYD PWLHTSAAVERLAKACAKAGAELVPVDSNPIDSVWTDRPAPPLGPVTIHDAAFAGEAEADKLARIRAEMTKLGVDALVLS DSHAVAWTFNIRGADVSHTPLPLSYALAPKDGRPTIFIDRRKLSDSARSHLERNADVREPDELTDALTRTAQSGAAIALD KATAADALSRLITSAGGKPVGGNDPVALLKAVKNPTEIAGARAAHRRDAVALARFLAWIDREAPKGTLTEIDAVEALETF RRETGALKDVSFPTISGTGPNGAIVHYRVTRKSNRRIVPGDLLLIDSGAQYEDGTTDVTRTIAIGDPTDEMRDRFTRVLR GHIAIARAVFPDGATGAQLDTLARQFLWQAGLDFEHGTGHGVGSYLSVHEGPARISKLGTTPLRRGMILSNEPGYYKRDA FGIRIENLVLVTEAGIAGAEKPMNSFETLTLAPIDRRLIDHRISKKEVAWLNDYHARVRREVRPHLDEATKLWLDAATEP FSLE
Sequences:
>Translated_644_residues MVQPADAEQRVTRRLVAWLHANGVHFARKRYMMPAMFEAYFQTFEDPEGGVALTARLAAFREELARRQLTGFVIPRADRQ QNEYVPPSEERLAWLTGFTGSAGLAIVLATKAAVFVDGRYTLQAAQQVDVRAWSIASLVDPPPESWLAEHLAAGDRLGYD PWLHTSAAVERLAKACAKAGAELVPVDSNPIDSVWTDRPAPPLGPVTIHDAAFAGEAEADKLARIRAEMTKLGVDALVLS DSHAVAWTFNIRGADVSHTPLPLSYALAPKDGRPTIFIDRRKLSDSARSHLERNADVREPDELTDALTRTAQSGAAIALD KATAADALSRLITSAGGKPVGGNDPVALLKAVKNPTEIAGARAAHRRDAVALARFLAWIDREAPKGTLTEIDAVEALETF RRETGALKDVSFPTISGTGPNGAIVHYRVTRKSNRRIVPGDLLLIDSGAQYEDGTTDVTRTIAIGDPTDEMRDRFTRVLR GHIAIARAVFPDGATGAQLDTLARQFLWQAGLDFEHGTGHGVGSYLSVHEGPARISKLGTTPLRRGMILSNEPGYYKRDA FGIRIENLVLVTEAGIAGAEKPMNSFETLTLAPIDRRLIDHRISKKEVAWLNDYHARVRREVRPHLDEATKLWLDAATEP FSLE >Mature_644_residues MVQPADAEQRVTRRLVAWLHANGVHFARKRYMMPAMFEAYFQTFEDPEGGVALTARLAAFREELARRQLTGFVIPRADRQ QNEYVPPSEERLAWLTGFTGSAGLAIVLATKAAVFVDGRYTLQAAQQVDVRAWSIASLVDPPPESWLAEHLAAGDRLGYD PWLHTSAAVERLAKACAKAGAELVPVDSNPIDSVWTDRPAPPLGPVTIHDAAFAGEAEADKLARIRAEMTKLGVDALVLS DSHAVAWTFNIRGADVSHTPLPLSYALAPKDGRPTIFIDRRKLSDSARSHLERNADVREPDELTDALTRTAQSGAAIALD KATAADALSRLITSAGGKPVGGNDPVALLKAVKNPTEIAGARAAHRRDAVALARFLAWIDREAPKGTLTEIDAVEALETF RRETGALKDVSFPTISGTGPNGAIVHYRVTRKSNRRIVPGDLLLIDSGAQYEDGTTDVTRTIAIGDPTDEMRDRFTRVLR GHIAIARAVFPDGATGAQLDTLARQFLWQAGLDFEHGTGHGVGSYLSVHEGPARISKLGTTPLRRGMILSNEPGYYKRDA FGIRIENLVLVTEAGIAGAEKPMNSFETLTLAPIDRRLIDHRISKKEVAWLNDYHARVRREVRPHLDEATKLWLDAATEP FSLE
Specific function: Splits dipeptides with a prolyl in the C-terminal position and a nonpolar amino acid at the N-terminal position [H]
COG id: COG0006
COG function: function code E; Xaa-Pro aminopeptidase
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the peptidase M24B family. Archaeal-type prolidase subfamily [H]
Homologues:
Organism=Homo sapiens, GI264681563, Length=613, Percent_Identity=40.4567699836868, Blast_Score=428, Evalue=1e-120, Organism=Homo sapiens, GI264681565, Length=613, Percent_Identity=38.8254486133768, Blast_Score=397, Evalue=1e-110, Organism=Homo sapiens, GI93141226, Length=612, Percent_Identity=35.6209150326797, Blast_Score=381, Evalue=1e-105, Organism=Escherichia coli, GI1788728, Length=238, Percent_Identity=33.1932773109244, Blast_Score=100, Evalue=3e-22, Organism=Caenorhabditis elegans, GI17509539, Length=597, Percent_Identity=35.0083752093802, Blast_Score=357, Evalue=1e-98, Organism=Caenorhabditis elegans, GI25149105, Length=611, Percent_Identity=28.9689034369885, Blast_Score=260, Evalue=2e-69, Organism=Saccharomyces cerevisiae, GI6322999, Length=655, Percent_Identity=32.6717557251908, Blast_Score=332, Evalue=8e-92, Organism=Drosophila melanogaster, GI17137632, Length=615, Percent_Identity=34.9593495934959, Blast_Score=337, Evalue=2e-92, Organism=Drosophila melanogaster, GI161078230, Length=596, Percent_Identity=31.3758389261745, Blast_Score=287, Evalue=2e-77, Organism=Drosophila melanogaster, GI21357287, Length=596, Percent_Identity=31.3758389261745, Blast_Score=287, Evalue=2e-77,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000587 - InterPro: IPR001714 - InterPro: IPR000994 - InterPro: IPR001131 [H]
Pfam domain/function: PF01321 Creatinase_N; PF00557 Peptidase_M24 [H]
EC number: =3.4.13.9 [H]
Molecular weight: Translated: 70289; Mature: 70289
Theoretical pI: Translated: 6.89; Mature: 6.89
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 1.4 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 1.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVQPADAEQRVTRRLVAWLHANGVHFARKRYMMPAMFEAYFQTFEDPEGGVALTARLAAF CCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEHHHHHHHH REELARRQLTGFVIPRADRQQNEYVPPSEERLAWLTGFTGSAGLAIVLATKAAVFVDGRY HHHHHHHHHHCEEECCCCCCCCCCCCCCHHHEEEEECCCCCCCEEEEEEECEEEEECCCH TLQAAQQVDVRAWSIASLVDPPPESWLAEHLAAGDRLGYDPWLHTSAAVERLAKACAKAG HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCC AELVPVDSNPIDSVWTDRPAPPLGPVTIHDAAFAGEAEADKLARIRAEMTKLGVDALVLS CEEEECCCCCCCCCCCCCCCCCCCCEEEECCHHCCCCHHHHHHHHHHHHHHHCCEEEEEE DSHAVAWTFNIRGADVSHTPLPLSYALAPKDGRPTIFIDRRKLSDSARSHLERNADVREP CCCEEEEEEEECCCCCCCCCCCEEEEECCCCCCCEEEEEHHHHHHHHHHHHHHCCCCCCH DELTDALTRTAQSGAAIALDKATAADALSRLITSAGGKPVGGNDPVALLKAVKNPTEIAG HHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCHHHHH ARAAHRRDAVALARFLAWIDREAPKGTLTEIDAVEALETFRRETGALKDVSFPTISGTGP HHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCC NGAIVHYRVTRKSNRRIVPGDLLLIDSGAQYEDGTTDVTRTIAIGDPTDEMRDRFTRVLR CCCEEEEEEECCCCCEECCCCEEEEECCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHH GHIAIARAVFPDGATGAQLDTLARQFLWQAGLDFEHGTGHGVGSYLSVHEGPARISKLGT HHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCEECCCCHHHHHHCCC TPLRRGMILSNEPGYYKRDAFGIRIENLVLVTEAGIAGAEKPMNSFETLTLAPIDRRLID CHHHCCEEECCCCCCEECCCCCEEEEEEEEEEECCCCCCCCCCCCCCEEEECHHHHHHHH HRISKKEVAWLNDYHARVRREVRPHLDEATKLWLDAATEPFSLE HHCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCC >Mature Secondary Structure MVQPADAEQRVTRRLVAWLHANGVHFARKRYMMPAMFEAYFQTFEDPEGGVALTARLAAF CCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEHHHHHHHH REELARRQLTGFVIPRADRQQNEYVPPSEERLAWLTGFTGSAGLAIVLATKAAVFVDGRY HHHHHHHHHHCEEECCCCCCCCCCCCCCHHHEEEEECCCCCCCEEEEEEECEEEEECCCH TLQAAQQVDVRAWSIASLVDPPPESWLAEHLAAGDRLGYDPWLHTSAAVERLAKACAKAG HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCC AELVPVDSNPIDSVWTDRPAPPLGPVTIHDAAFAGEAEADKLARIRAEMTKLGVDALVLS CEEEECCCCCCCCCCCCCCCCCCCCEEEECCHHCCCCHHHHHHHHHHHHHHHCCEEEEEE DSHAVAWTFNIRGADVSHTPLPLSYALAPKDGRPTIFIDRRKLSDSARSHLERNADVREP CCCEEEEEEEECCCCCCCCCCCEEEEECCCCCCCEEEEEHHHHHHHHHHHHHHCCCCCCH DELTDALTRTAQSGAAIALDKATAADALSRLITSAGGKPVGGNDPVALLKAVKNPTEIAG HHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCHHHHH ARAAHRRDAVALARFLAWIDREAPKGTLTEIDAVEALETFRRETGALKDVSFPTISGTGP HHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCC NGAIVHYRVTRKSNRRIVPGDLLLIDSGAQYEDGTTDVTRTIAIGDPTDEMRDRFTRVLR CCCEEEEEEECCCCCEECCCCEEEEECCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHH GHIAIARAVFPDGATGAQLDTLARQFLWQAGLDFEHGTGHGVGSYLSVHEGPARISKLGT HHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCEECCCCHHHHHHCCC TPLRRGMILSNEPGYYKRDAFGIRIENLVLVTEAGIAGAEKPMNSFETLTLAPIDRRLID CHHHCCEEECCCCCCEECCCCCEEEEEEEEEEECCCCCCCCCCCCCCEEEECHHHHHHHH HRISKKEVAWLNDYHARVRREVRPHLDEATKLWLDAATEPFSLE HHCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9733678; 11223522; 11210522 [H]