| Definition | Nitrobacter winogradskyi Nb-255, complete genome. |
|---|---|
| Accession | NC_007406 |
| Length | 3,402,093 |
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The map label for this gene is foxA [H]
Identifier: 75676503
GI number: 75676503
Start: 2535457
End: 2537796
Strand: Direct
Name: foxA [H]
Synonym: Nwi_2318
Alternate gene names: 75676503
Gene position: 2535457-2537796 (Clockwise)
Preceding gene: 75676502
Following gene: 75676504
Centisome position: 74.53
GC content: 63.16
Gene sequence:
>2340_bases ATGTCGAACGATACCGCCCTCGGCCGGGGTGGCGCGCTTTGCTGCGTGCTCGCAACCGTGGCCGCGATCGAATCCTGCTC GACTGCTTCGGCGCAGTCGAATTCCGATACCGTGCTGCCGGCGGTGACGATCACCGAACCGGCCCGGCAACCCCTTCGGT CCCAGCCAAACCGCGCCTTCCGCGCCTCCGCCGCACGACGCGCAACGCATCAATCGGCTTCGCGAACCCCCGCGGTCACG CCGTCAGCCGCCCTCCCCGCCACCGCGCCCGGCACGATGAATGCGGAAGGAGCGCCGGGCCCGCTGAATCTCGGTATCCC GAATGCGGCCGGCAGCCTCGTTGGGCTGACGCCGCGCGAGACGCCGGCGACCGTCAACATCATCACACAGCGGGATATGC AGGAAAAAGGCCTCCGCACGATGGTGGAAACCTTCAACTCGGTTCCGGGCGTCATGTCCGGAAACCTCCCCGGCGAACCC GGCGTCATCTCCATGCGCGGGTTCTCCCGCGCAGCGACCGGATATGCGGTCGACGGCGTTCGCGCGCCAGACCCGTTGAT CGTCTCCCGCGATTTCGACACCTTCAGTTTCGAGCGTGTCGAAATCCTGAAAGGACCCGCGTCCGTCATTCAGGGTGTCG GCGCCTTGGCCGGAGCCGTGAATCTTGTAACCAAGCAGCCCAAGCTCGGCCAGGCAGGCGCCCAGGGCCTGTTGAGCTAT GGCAGCTTCAACTCGCTGCGGACGGGCATCGATATCAACGCTCCGATCGGATCAAACGCGGCCGTCCGCTCGACGCTGAG CTACGGACAATCCGACGGCTTTATCAACGACACCCGATCGCGCAAGGTGGGCGCAACGACCAGCGGGACGCTCGCCCCGA CCGACAGGCTCACCTTCACAAGCTCCGCCAGCTTCTTTCACGACGAGTTCCGGACACCCTATCAGGGCACCCCGCTGATC GCCCGCTCGCTCGCGCGCGATCCCACGAACCTCGTCTCGGCCCCCGGCGGGCTTGTGATCGACCGTTCCATCCGCAATCA GAACTATAATGTCGAGAATGGGCTGATGACGTCGGACACTGTCTGGCTGCGCGGCGGCGCCGAATACAAGCTGACCGACA ACTGGACACTGCGGAACGATCTCAGTTTCTTCAAGTCCGACCGGTACTGGGCCAGTTCCGAAGACTTCACGTTCAATTCC GTGAGCGGCCTGCTCGACCGTTCGACAACGAAAATCACGCACGCGCACCAGATCTGGTCGGAGCGTGCGGCGGCGGCCTA TGACGGCATCATCGGAGGATTCCGCAACCGCTTCGCTGCCGGGCTCGAATACACCGACACGGATTTCGACTCGAGCAGAC GGTTCGGATCCGCCACGCCGGTCGATCCCTTCAATCCGGATCGCGGCTACTTCCCTGCCGATACGGCTGCGAACTTCCCG ACCCGACAGGATTTCACCAGCGGACTAAAAACGTTCGCAGCCTTCGCGGAGAACGCCATCAACCTGACGCCGGACTGGCT GATGCTCGCCAGCGTCCGGCACGAGAGCATGAAGCTCGATCGACGGATCGACGATCTGAACACGGGTACGGTCACCCGCT TCGAAAAGACGTTCGACAATCTCTCGTGGCGGGTCGGAACGGTTTACAACGTAACGTCCGGAACGGCCTTATTCGGCCAG TATAATCGCGCCGCCATTCCGGTCTCGGGGCTGTTGCTCAGCAATCTCGCCAACGGACGGTTCGACCTGTCCACCGGAAG TTCGATCGAGGGCGGAATCAAATCGTCGCTCTTGGACAACCGTTTGGTGACGACCGCTTCGGTCTATCAGATCGAGCAGA ACAATATCCTGACCCGCGATCCGACAACTCCGGCGCTGACGGTGCAGGGCGGCAGCCAGCGCTCCCGCGGCGTGGAACTG GATGTCGCGGTATCACTGACGCCGCAGTGGAGAGTGAACGCGAACGCGTCATTCATCAAGGCGGAGTTTACCGAGTTGCG TAGCGCCACGCTCGATCTGCGCGGGAACCGCCCGATCAACGTGCCGGCGCAGGCGTTCATGGTCTCGACCAGCTATCGCT TCGATCCGGTGCCGCTGACAATCGGCGCATCGGCGCAGCACGTAGGGTCTTTCTACACCGACACCGCCAACACCATCGAG GTAAGCGGGCGAACCCTGCTTGACGCCTGGGTGGCCTACGACATCGGCGGCGGAACGTTGCGGCTGCGCGGCCGCAATCT CACCAACGCATTCTATGCGAACTGGTCCGGATACAGTCCCACCCAGGTGTATCTCGGCGCGCCGCGCAATTTCGACCTCT CCTACAACGTCAGGTTCTGA
Upstream 100 bases:
>100_bases CAACAAATCCGCTCGACCGCCGCGACACCTTCGCGTTCGCGGCGGTCCGATCTGTTTGAACGCTCCGGGCGATAGCCCGC ATCAGGAAACAAAATACATC
Downstream 100 bases:
>100_bases TGCGTGAAACACGGCGTCTCGCCGGTGCTCCGATGAGGCGTCCCCATTCCGATGTCTGAAAGCAAACGCCGATGTCCAAC TCCTTCTCAGCCCTGGCTCT
Product: TonB-dependent siderophore receptor
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 779; Mature: 778
Protein sequence:
>779_residues MSNDTALGRGGALCCVLATVAAIESCSTASAQSNSDTVLPAVTITEPARQPLRSQPNRAFRASAARRATHQSASRTPAVT PSAALPATAPGTMNAEGAPGPLNLGIPNAAGSLVGLTPRETPATVNIITQRDMQEKGLRTMVETFNSVPGVMSGNLPGEP GVISMRGFSRAATGYAVDGVRAPDPLIVSRDFDTFSFERVEILKGPASVIQGVGALAGAVNLVTKQPKLGQAGAQGLLSY GSFNSLRTGIDINAPIGSNAAVRSTLSYGQSDGFINDTRSRKVGATTSGTLAPTDRLTFTSSASFFHDEFRTPYQGTPLI ARSLARDPTNLVSAPGGLVIDRSIRNQNYNVENGLMTSDTVWLRGGAEYKLTDNWTLRNDLSFFKSDRYWASSEDFTFNS VSGLLDRSTTKITHAHQIWSERAAAAYDGIIGGFRNRFAAGLEYTDTDFDSSRRFGSATPVDPFNPDRGYFPADTAANFP TRQDFTSGLKTFAAFAENAINLTPDWLMLASVRHESMKLDRRIDDLNTGTVTRFEKTFDNLSWRVGTVYNVTSGTALFGQ YNRAAIPVSGLLLSNLANGRFDLSTGSSIEGGIKSSLLDNRLVTTASVYQIEQNNILTRDPTTPALTVQGGSQRSRGVEL DVAVSLTPQWRVNANASFIKAEFTELRSATLDLRGNRPINVPAQAFMVSTSYRFDPVPLTIGASAQHVGSFYTDTANTIE VSGRTLLDAWVAYDIGGGTLRLRGRNLTNAFYANWSGYSPTQVYLGAPRNFDLSYNVRF
Sequences:
>Translated_779_residues MSNDTALGRGGALCCVLATVAAIESCSTASAQSNSDTVLPAVTITEPARQPLRSQPNRAFRASAARRATHQSASRTPAVT PSAALPATAPGTMNAEGAPGPLNLGIPNAAGSLVGLTPRETPATVNIITQRDMQEKGLRTMVETFNSVPGVMSGNLPGEP GVISMRGFSRAATGYAVDGVRAPDPLIVSRDFDTFSFERVEILKGPASVIQGVGALAGAVNLVTKQPKLGQAGAQGLLSY GSFNSLRTGIDINAPIGSNAAVRSTLSYGQSDGFINDTRSRKVGATTSGTLAPTDRLTFTSSASFFHDEFRTPYQGTPLI ARSLARDPTNLVSAPGGLVIDRSIRNQNYNVENGLMTSDTVWLRGGAEYKLTDNWTLRNDLSFFKSDRYWASSEDFTFNS VSGLLDRSTTKITHAHQIWSERAAAAYDGIIGGFRNRFAAGLEYTDTDFDSSRRFGSATPVDPFNPDRGYFPADTAANFP TRQDFTSGLKTFAAFAENAINLTPDWLMLASVRHESMKLDRRIDDLNTGTVTRFEKTFDNLSWRVGTVYNVTSGTALFGQ YNRAAIPVSGLLLSNLANGRFDLSTGSSIEGGIKSSLLDNRLVTTASVYQIEQNNILTRDPTTPALTVQGGSQRSRGVEL DVAVSLTPQWRVNANASFIKAEFTELRSATLDLRGNRPINVPAQAFMVSTSYRFDPVPLTIGASAQHVGSFYTDTANTIE VSGRTLLDAWVAYDIGGGTLRLRGRNLTNAFYANWSGYSPTQVYLGAPRNFDLSYNVRF >Mature_778_residues SNDTALGRGGALCCVLATVAAIESCSTASAQSNSDTVLPAVTITEPARQPLRSQPNRAFRASAARRATHQSASRTPAVTP SAALPATAPGTMNAEGAPGPLNLGIPNAAGSLVGLTPRETPATVNIITQRDMQEKGLRTMVETFNSVPGVMSGNLPGEPG VISMRGFSRAATGYAVDGVRAPDPLIVSRDFDTFSFERVEILKGPASVIQGVGALAGAVNLVTKQPKLGQAGAQGLLSYG SFNSLRTGIDINAPIGSNAAVRSTLSYGQSDGFINDTRSRKVGATTSGTLAPTDRLTFTSSASFFHDEFRTPYQGTPLIA RSLARDPTNLVSAPGGLVIDRSIRNQNYNVENGLMTSDTVWLRGGAEYKLTDNWTLRNDLSFFKSDRYWASSEDFTFNSV SGLLDRSTTKITHAHQIWSERAAAAYDGIIGGFRNRFAAGLEYTDTDFDSSRRFGSATPVDPFNPDRGYFPADTAANFPT RQDFTSGLKTFAAFAENAINLTPDWLMLASVRHESMKLDRRIDDLNTGTVTRFEKTFDNLSWRVGTVYNVTSGTALFGQY NRAAIPVSGLLLSNLANGRFDLSTGSSIEGGIKSSLLDNRLVTTASVYQIEQNNILTRDPTTPALTVQGGSQRSRGVELD VAVSLTPQWRVNANASFIKAEFTELRSATLDLRGNRPINVPAQAFMVSTSYRFDPVPLTIGASAQHVGSFYTDTANTIEV SGRTLLDAWVAYDIGGGTLRLRGRNLTNAFYANWSGYSPTQVYLGAPRNFDLSYNVRF
Specific function: Ferrioxamine binding and uptake, in association with the tonB protein. May play a role in intestinal colonization [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell outer membrane [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the tonB-dependent receptor family [H]
Homologues:
Organism=Escherichia coli, GI1787024, Length=727, Percent_Identity=23.6588720770289, Blast_Score=116, Evalue=7e-27, Organism=Escherichia coli, GI1786344, Length=283, Percent_Identity=27.208480565371, Blast_Score=89, Evalue=1e-18, Organism=Escherichia coli, GI1787344, Length=247, Percent_Identity=25.1012145748988, Blast_Score=76, Evalue=9e-15, Organism=Escherichia coli, GI1788478, Length=120, Percent_Identity=36.6666666666667, Blast_Score=74, Evalue=3e-14,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012910 - InterPro: IPR000531 - InterPro: IPR010105 [H]
Pfam domain/function: PF07715 Plug; PF00593 TonB_dep_Rec [H]
EC number: NA
Molecular weight: Translated: 83648; Mature: 83517
Theoretical pI: Translated: 9.06; Mature: 9.06
Prosite motif: PS01156 TONB_DEPENDENT_REC_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 1.7 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 1.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSNDTALGRGGALCCVLATVAAIESCSTASAQSNSDTVLPAVTITEPARQPLRSQPNRAF CCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEECCHHHHHHHCCCCHHH RASAARRATHQSASRTPAVTPSAALPATAPGTMNAEGAPGPLNLGIPNAAGSLVGLTPRE HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCEEECCCCC TPATVNIITQRDMQEKGLRTMVETFNSVPGVMSGNLPGEPGVISMRGFSRAATGYAVDGV CCCEEEEEECCCHHHHHHHHHHHHHHCCCCCEECCCCCCCCEEEECCCCCCCCCEEECCC RAPDPLIVSRDFDTFSFERVEILKGPASVIQGVGALAGAVNLVTKQPKLGQAGAQGLLSY CCCCCEEEECCCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHC GSFNSLRTGIDINAPIGSNAAVRSTLSYGQSDGFINDTRSRKVGATTSGTLAPTDRLTFT CCCCHHHCCCEECCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEE SSASFFHDEFRTPYQGTPLIARSLARDPTNLVSAPGGLVIDRSIRNQNYNVENGLMTSDT CCCHHHHHHHCCCCCCCHHHHHHHCCCCHHHHCCCCCEEEEECCCCCCCCCCCCEEECCE VWLRGGAEYKLTDNWTLRNDLSFFKSDRYWASSEDFTFNSVSGLLDRSTTKITHAHQIWS EEEECCCEEEEECCCEECCCHHHHHCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHH ERAAAAYDGIIGGFRNRFAAGLEYTDTDFDSSRRFGSATPVDPFNPDRGYFPADTAANFP HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC TRQDFTSGLKTFAAFAENAINLTPDWLMLASVRHESMKLDRRIDDLNTGTVTRFEKTFDN CHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHC LSWRVGTVYNVTSGTALFGQYNRAAIPVSGLLLSNLANGRFDLSTGSSIEGGIKSSLLDN CCEEEEEEEEECCCEEEEECCCCCCCCHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHCC RLVTTASVYQIEQNNILTRDPTTPALTVQGGSQRSRGVELDVAVSLTPQWRVNANASFIK CCEEEEEEEEEECCCEEECCCCCCEEEEECCCCCCCCEEEEEEEEECCCEEECCCCHHHH AEFTELRSATLDLRGNRPINVPAQAFMVSTSYRFDPVPLTIGASAQHVGSFYTDTANTIE HHHHHHHHHEEEECCCCCCCCCCCEEEEECCCCCCCEEEEECCCHHHHCCEECCCCCEEE VSGRTLLDAWVAYDIGGGTLRLRGRNLTNAFYANWSGYSPTQVYLGAPRNFDLSYNVRF ECCCEEEEEEEEEECCCCEEEEECCCCCCEEEECCCCCCCCEEEEECCCCCCEEEEECC >Mature Secondary Structure SNDTALGRGGALCCVLATVAAIESCSTASAQSNSDTVLPAVTITEPARQPLRSQPNRAF CCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEECCHHHHHHHCCCCHHH RASAARRATHQSASRTPAVTPSAALPATAPGTMNAEGAPGPLNLGIPNAAGSLVGLTPRE HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCEEECCCCC TPATVNIITQRDMQEKGLRTMVETFNSVPGVMSGNLPGEPGVISMRGFSRAATGYAVDGV CCCEEEEEECCCHHHHHHHHHHHHHHCCCCCEECCCCCCCCEEEECCCCCCCCCEEECCC RAPDPLIVSRDFDTFSFERVEILKGPASVIQGVGALAGAVNLVTKQPKLGQAGAQGLLSY CCCCCEEEECCCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHC GSFNSLRTGIDINAPIGSNAAVRSTLSYGQSDGFINDTRSRKVGATTSGTLAPTDRLTFT CCCCHHHCCCEECCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEE SSASFFHDEFRTPYQGTPLIARSLARDPTNLVSAPGGLVIDRSIRNQNYNVENGLMTSDT CCCHHHHHHHCCCCCCCHHHHHHHCCCCHHHHCCCCCEEEEECCCCCCCCCCCCEEECCE VWLRGGAEYKLTDNWTLRNDLSFFKSDRYWASSEDFTFNSVSGLLDRSTTKITHAHQIWS EEEECCCEEEEECCCEECCCHHHHHCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHH ERAAAAYDGIIGGFRNRFAAGLEYTDTDFDSSRRFGSATPVDPFNPDRGYFPADTAANFP HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC TRQDFTSGLKTFAAFAENAINLTPDWLMLASVRHESMKLDRRIDDLNTGTVTRFEKTFDN CHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHC LSWRVGTVYNVTSGTALFGQYNRAAIPVSGLLLSNLANGRFDLSTGSSIEGGIKSSLLDN CCEEEEEEEEECCCEEEEECCCCCCCCHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHCC RLVTTASVYQIEQNNILTRDPTTPALTVQGGSQRSRGVELDVAVSLTPQWRVNANASFIK CCEEEEEEEEEECCCEEECCCCCCEEEEECCCCCCCCEEEEEEEEECCCEEECCCCHHHH AEFTELRSATLDLRGNRPINVPAQAFMVSTSYRFDPVPLTIGASAQHVGSFYTDTANTIE HHHHHHHHHEEEECCCCCCCCCCCEEEEECCCCCCCEEEEECCCHHHHCCEECCCCCEEE VSGRTLLDAWVAYDIGGGTLRLRGRNLTNAFYANWSGYSPTQVYLGAPRNFDLSYNVRF ECCCEEEEEEEEEECCCCEEEEECCCCCCEEEECCCCCCCCEEEEECCCCCCEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 11677609; 10103258; 7642488 [H]