| Definition | Nitrobacter winogradskyi Nb-255, complete genome. |
|---|---|
| Accession | NC_007406 |
| Length | 3,402,093 |
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The map label for this gene is yfeW [C]
Identifier: 75676473
GI number: 75676473
Start: 2501580
End: 2502854
Strand: Direct
Name: yfeW [C]
Synonym: Nwi_2288
Alternate gene names: 75676473
Gene position: 2501580-2502854 (Clockwise)
Preceding gene: 75676465
Following gene: 75676476
Centisome position: 73.53
GC content: 62.98
Gene sequence:
>1275_bases ATGACAACCCACAATTCCGGCTCTCCCGAAGCTTCAGGGATGTCCAGCGTCGCGCTCGCGCGCATTGATGATCACCTGAA GCGACGATACATCGATGCCGGCCGGTTTCCGGGCACACAGCTGATGGTGTATCGCCGCGGCAGCCTCGTGCACCACTCCG TGCAGGGTTTCGCCGATCTGGAACGCAAGGTGCGGCTGAAGGGCGACGCCATCTTCCGCATCTATTCCATGACCAAGCCG ATCACCTCGGTGGCTTTCATGATGCTGGTGGAACAGGGCCTGGTTGCGCTCGACGATCCCGTTCACAGGTATATTCCCGA ATGGAAGAACCTTGGCGTGTTCCAGGCGGGCGCCGCGCCTGCTTTCATGACCAGGCCGCCGTCGCGGCCGATGCAGATCG TCGACCTGCTCCGCCACACATCCGGACTGACCTACGGTTTCCAGCAGCGGACCAACGTCGACGCGGCGTATCGCGACAAG CGGATCGGCACGCTCGACCCTGAGGGAACGCTCGCTTCGATGATCGCAGATCTTGCCGGTATTCCGCTGGAATTCTCGCC GGGCGAGGCCTGGAATTACTCGGTCTCCACGGATGTGATCGGCTATCTCATCGGCAGGATCAGCGGCATTCCCTTCGACC GGTACTTGAAAGAGCGCATTTTCGACCCGTTGGAAATGGCCGACACCGGCTTCTTCGTGCCGGCCGGCAAGGCGCACCGG CTCGCGGCCTGCTATAGCGCTGATGCAGGCGGCATGGTGCCGGCCCGTTCGCCGGGTGCGACGAGTGGACTGACGTTGCA GGACGATCCCGCCACCAGCCCGTTTCTCTCCCCGCCCGGCTTCGTCTCGGGAGGCGGCGGCCTGTGCTCGACGGCCACCG ACTACCTCACCTTCTGCCGGGCGCTGCTCAACGGCGGTGAACTCGGGGGCGTCAGGCTGATCGGGCCGAAAACGCTGGCG CTGATGACGAGCAATCATCTGCCCGGCAATCGGGACTTGCCGGAGATGTCGCGATCCATGTTCGCGGAGGCGACCTACAG CGGCATCGGCTTCGGACTCGGCTTCGCCGTCACCATCAATCCCGCAAAGACGCTGATAGCCGGAAGTCCCGGCGAATATG CCTGGGGCGGCGTTGCGACGACGTCGTTCTGGATCGATCCGGCGGAAGAGTTGATCGCCATCTTCATGACGCAGGTGATC CCTTCGACCGCCTATCCTGTCCGACGCGAACTTCGCACCATGGTGTATGCGGCCATCACCGACTCCAATCCTTGA
Upstream 100 bases:
>100_bases GGAACCGCGGTTCACAATCGACCGGGTCATGCGGCACATCGTGTAGGCGGACCCGGCTTGATCGATCCGAAACTGGCCCT CTCACCCGGAGCGACCCCAG
Downstream 100 bases:
>100_bases GCGACATTGCTTAAGGTACTCAAGCCTCGACGCTTATTTCGTCGTTCACTCACTCGCCGGCCGATGCGAGCGTGCGCTTC GCCGCGATCAGGTGCGGAAT
Product: beta-lactamase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 424; Mature: 423
Protein sequence:
>424_residues MTTHNSGSPEASGMSSVALARIDDHLKRRYIDAGRFPGTQLMVYRRGSLVHHSVQGFADLERKVRLKGDAIFRIYSMTKP ITSVAFMMLVEQGLVALDDPVHRYIPEWKNLGVFQAGAAPAFMTRPPSRPMQIVDLLRHTSGLTYGFQQRTNVDAAYRDK RIGTLDPEGTLASMIADLAGIPLEFSPGEAWNYSVSTDVIGYLIGRISGIPFDRYLKERIFDPLEMADTGFFVPAGKAHR LAACYSADAGGMVPARSPGATSGLTLQDDPATSPFLSPPGFVSGGGGLCSTATDYLTFCRALLNGGELGGVRLIGPKTLA LMTSNHLPGNRDLPEMSRSMFAEATYSGIGFGLGFAVTINPAKTLIAGSPGEYAWGGVATTSFWIDPAEELIAIFMTQVI PSTAYPVRRELRTMVYAAITDSNP
Sequences:
>Translated_424_residues MTTHNSGSPEASGMSSVALARIDDHLKRRYIDAGRFPGTQLMVYRRGSLVHHSVQGFADLERKVRLKGDAIFRIYSMTKP ITSVAFMMLVEQGLVALDDPVHRYIPEWKNLGVFQAGAAPAFMTRPPSRPMQIVDLLRHTSGLTYGFQQRTNVDAAYRDK RIGTLDPEGTLASMIADLAGIPLEFSPGEAWNYSVSTDVIGYLIGRISGIPFDRYLKERIFDPLEMADTGFFVPAGKAHR LAACYSADAGGMVPARSPGATSGLTLQDDPATSPFLSPPGFVSGGGGLCSTATDYLTFCRALLNGGELGGVRLIGPKTLA LMTSNHLPGNRDLPEMSRSMFAEATYSGIGFGLGFAVTINPAKTLIAGSPGEYAWGGVATTSFWIDPAEELIAIFMTQVI PSTAYPVRRELRTMVYAAITDSNP >Mature_423_residues TTHNSGSPEASGMSSVALARIDDHLKRRYIDAGRFPGTQLMVYRRGSLVHHSVQGFADLERKVRLKGDAIFRIYSMTKPI TSVAFMMLVEQGLVALDDPVHRYIPEWKNLGVFQAGAAPAFMTRPPSRPMQIVDLLRHTSGLTYGFQQRTNVDAAYRDKR IGTLDPEGTLASMIADLAGIPLEFSPGEAWNYSVSTDVIGYLIGRISGIPFDRYLKERIFDPLEMADTGFFVPAGKAHRL AACYSADAGGMVPARSPGATSGLTLQDDPATSPFLSPPGFVSGGGGLCSTATDYLTFCRALLNGGELGGVRLIGPKTLAL MTSNHLPGNRDLPEMSRSMFAEATYSGIGFGLGFAVTINPAKTLIAGSPGEYAWGGVATTSFWIDPAEELIAIFMTQVIP STAYPVRRELRTMVYAAITDSNP
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Escherichia coli, GI87082101, Length=412, Percent_Identity=25.9708737864078, Blast_Score=92, Evalue=5e-20,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012338 - InterPro: IPR001466 [H]
Pfam domain/function: PF00144 Beta-lactamase [H]
EC number: NA
Molecular weight: Translated: 45717; Mature: 45586
Theoretical pI: Translated: 7.25; Mature: 7.25
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 3.8 %Met (Translated Protein) 4.5 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 3.5 %Met (Mature Protein) 4.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTTHNSGSPEASGMSSVALARIDDHLKRRYIDAGRFPGTQLMVYRRGSLVHHSVQGFADL CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCHHHHHHHHHHHH ERKVRLKGDAIFRIYSMTKPITSVAFMMLVEQGLVALDDPVHRYIPEWKNLGVFQAGAAP HHHHEECCCEEEEEEHHHCHHHHHHHHHHHHHCCCCCCCHHHHHCCHHHCCCEEECCCCC AFMTRPPSRPMQIVDLLRHTSGLTYGFQQRTNVDAAYRDKRIGTLDPEGTLASMIADLAG CCCCCCCCCHHHHHHHHHHHCCCCCCCHHCCCCCHHHHCCCCCCCCCCHHHHHHHHHHHC IPLEFSPGEAWNYSVSTDVIGYLIGRISGIPFDRYLKERIFDPLEMADTGFFVPAGKAHR CCEEECCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHCCCCEECCCCCCHH LAACYSADAGGMVPARSPGATSGLTLQDDPATSPFLSPPGFVSGGGGLCSTATDYLTFCR EEEEECCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH ALLNGGELGGVRLIGPKTLALMTSNHLPGNRDLPEMSRSMFAEATYSGIGFGLGFAVTIN HHHCCCCCCCEEEECCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEEC PAKTLIAGSPGEYAWGGVATTSFWIDPAEELIAIFMTQVIPSTAYPVRRELRTMVYAAIT CHHHEEECCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHEEEEE DSNP CCCC >Mature Secondary Structure TTHNSGSPEASGMSSVALARIDDHLKRRYIDAGRFPGTQLMVYRRGSLVHHSVQGFADL CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCHHHHHHHHHHHH ERKVRLKGDAIFRIYSMTKPITSVAFMMLVEQGLVALDDPVHRYIPEWKNLGVFQAGAAP HHHHEECCCEEEEEEHHHCHHHHHHHHHHHHHCCCCCCCHHHHHCCHHHCCCEEECCCCC AFMTRPPSRPMQIVDLLRHTSGLTYGFQQRTNVDAAYRDKRIGTLDPEGTLASMIADLAG CCCCCCCCCHHHHHHHHHHHCCCCCCCHHCCCCCHHHHCCCCCCCCCCHHHHHHHHHHHC IPLEFSPGEAWNYSVSTDVIGYLIGRISGIPFDRYLKERIFDPLEMADTGFFVPAGKAHR CCEEECCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHCCCCEECCCCCCHH LAACYSADAGGMVPARSPGATSGLTLQDDPATSPFLSPPGFVSGGGGLCSTATDYLTFCR EEEEECCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH ALLNGGELGGVRLIGPKTLALMTSNHLPGNRDLPEMSRSMFAEATYSGIGFGLGFAVTIN HHHCCCCCCCEEEECCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEEC PAKTLIAGSPGEYAWGGVATTSFWIDPAEELIAIFMTQVIPSTAYPVRRELRTMVYAAIT CHHHEEECCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHEEEEE DSNP CCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9634230; 12218036 [H]