| Definition | Nitrobacter winogradskyi Nb-255, complete genome. |
|---|---|
| Accession | NC_007406 |
| Length | 3,402,093 |
Click here to switch to the map view.
The map label for this gene is yfhR [C]
Identifier: 75676465
GI number: 75676465
Start: 2490127
End: 2491347
Strand: Direct
Name: yfhR [C]
Synonym: Nwi_2280
Alternate gene names: 75676465
Gene position: 2490127-2491347 (Clockwise)
Preceding gene: 75676464
Following gene: 75676473
Centisome position: 73.19
GC content: 63.8
Gene sequence:
>1221_bases GTGCCGCACGAACGTTTCCAGTTTTCGGGATCAGGCGGTCATAAACTCGCCGCCACGCTGGACCTCCCCGACAGCGAGCC TGTGGCCTATGCGCTGTTCGCGCATTGCTTTACCTGCGGCAAGGACGTGCTTGCGGCAAGACGCATCGCCACGGGGCTGA CAGGACGAGGGATAGCCGTTCTGCGATTCGACTTCACCGGCCTCGGAGCGAGTGAAGGTGAATTCGCCAACAGCACGTTC TCATCCAATATCGCTGATCTCGTTCTGGCGGCCGACCATTTGCGGCAGACGCGCAAGGCGCCGGCGCTTCTGATCGGCCA CAGCCTCGGCGGCGCGGCCGTGCTCGCTGCCGCGGCACGGATTCCCGAAGCAGAAGCGGTGGTGACGATCGCCGCGCCCT CCGATCCCGCACATGTCACGCGCCTGTTCGCCGATCACGTCACCGATATCCACGAGCAAGGCGCGGTCGAGGTGTCCCTC GCCGGCCGCCCGTTTCCGATCAGCCGGCAGTTTCTCGACGATATCGCCGAGCACAACCTGACGGAGCAGATCGCGAACCT GCGAAGGGCGCTGCTGGTCCTGCATTCTCCGACCGACGACATCGTCGGCATCGACAACGCCACCCGCATTTTCGTTGCCG CAAAACATCCCAAAAGCTTCATATCGCTCGCTGGGGCGGATCATCTGCTAAGCGAGAAGCGCGACACCGGCTACGTGGCG GAGGTGATCGCCTCATGGGCGCAGCGCTACCTTGAGCCGCGGCCCGCCAGCGCCGCAGAAAACCCAGAATCGCGCGACGT CGTCGTCCGGGAAACCGGCCGCGGCAAATTTCAGCAGACGGTTACTGTCGGTCCGCATCGGTTGAAGGCCGACGAGCCTA TACCGGTCGGCGGCGACGATACCGGACCGGGGCCTTACGATCTCCTGCTTGCGGCGCTCGGCGCCTGCACCTCGATGACC CTGCGACTGTATGCCGAGCGGAAGGCGCTGCCGCTCGATCGCGTCACCGTCAGACTGCGGCACAGCAAGGTTCATGCAAA GGACTGCGCCGAGTGTGAGACCAAAACCGGCACGCTCGATCAGATCGAGCGTGAGATCGCGATGGAAGGAACGCTCGACC CGGATCAGCGGCAGAAACTGATCGATATCGCGGACAAGTGTCCGGTTCACAGAACGCTGACGTCGGAGGTCCGCATCACC ACACGCACGGCAAGCCGCTGA
Upstream 100 bases:
>100_bases GAAGTGGTCCGAGGGCAGCGTGCGCGGCCCACGCCAGCTTCCGCTGCTGCTCGGCAAGGCTTGAAGTCTGATTCGACTGC GCAAAAGAAGGAAGCCAGAC
Downstream 100 bases:
>100_bases ACCAGCGTCCGCTCCTGAGCGTTGACCGCGAAGCCGATGCGGCAGCTTAACAGCGTCGCCGCCTCTACTTCTTGTCTTTT GTTGTTCGCCCGGTCCCTAG
Product: OsmC-like protein
Products: NA
Alternate protein names: OsmC-Like Protein; Hydrolase; OsmC-Like Family Protein; Redox Protein; Osmc Family Protein; OsmC-Like Protein Superfamily Protein; Redox Protein Regulator Of Disulfide Bond Formation; Hydrolase Of Alpha/Beta Superfamily Protein; Hydrolases Of Alpha/Beta Superfamily; Alpha/Beta Hydrolase Fold Protein; OsmC-Like Protein/ Redox Protein; Hydroperoxide Resistance Protein OsmC-Like Protein; Alpha/Beta Fold Family Hydrolase; OsmC-Like Family; Osmotically Inducible Protein; Regulator Of Disulfide Bond Formation Redox Protein; Hydrolytic Protein; Hydrolases; Peptidase S; Secreted Protein
Number of amino acids: Translated: 406; Mature: 405
Protein sequence:
>406_residues MPHERFQFSGSGGHKLAATLDLPDSEPVAYALFAHCFTCGKDVLAARRIATGLTGRGIAVLRFDFTGLGASEGEFANSTF SSNIADLVLAADHLRQTRKAPALLIGHSLGGAAVLAAAARIPEAEAVVTIAAPSDPAHVTRLFADHVTDIHEQGAVEVSL AGRPFPISRQFLDDIAEHNLTEQIANLRRALLVLHSPTDDIVGIDNATRIFVAAKHPKSFISLAGADHLLSEKRDTGYVA EVIASWAQRYLEPRPASAAENPESRDVVVRETGRGKFQQTVTVGPHRLKADEPIPVGGDDTGPGPYDLLLAALGACTSMT LRLYAERKALPLDRVTVRLRHSKVHAKDCAECETKTGTLDQIEREIAMEGTLDPDQRQKLIDIADKCPVHRTLTSEVRIT TRTASR
Sequences:
>Translated_406_residues MPHERFQFSGSGGHKLAATLDLPDSEPVAYALFAHCFTCGKDVLAARRIATGLTGRGIAVLRFDFTGLGASEGEFANSTF SSNIADLVLAADHLRQTRKAPALLIGHSLGGAAVLAAAARIPEAEAVVTIAAPSDPAHVTRLFADHVTDIHEQGAVEVSL AGRPFPISRQFLDDIAEHNLTEQIANLRRALLVLHSPTDDIVGIDNATRIFVAAKHPKSFISLAGADHLLSEKRDTGYVA EVIASWAQRYLEPRPASAAENPESRDVVVRETGRGKFQQTVTVGPHRLKADEPIPVGGDDTGPGPYDLLLAALGACTSMT LRLYAERKALPLDRVTVRLRHSKVHAKDCAECETKTGTLDQIEREIAMEGTLDPDQRQKLIDIADKCPVHRTLTSEVRIT TRTASR >Mature_405_residues PHERFQFSGSGGHKLAATLDLPDSEPVAYALFAHCFTCGKDVLAARRIATGLTGRGIAVLRFDFTGLGASEGEFANSTFS SNIADLVLAADHLRQTRKAPALLIGHSLGGAAVLAAAARIPEAEAVVTIAAPSDPAHVTRLFADHVTDIHEQGAVEVSLA GRPFPISRQFLDDIAEHNLTEQIANLRRALLVLHSPTDDIVGIDNATRIFVAAKHPKSFISLAGADHLLSEKRDTGYVAE VIASWAQRYLEPRPASAAENPESRDVVVRETGRGKFQQTVTVGPHRLKADEPIPVGGDDTGPGPYDLLLAALGACTSMTL RLYAERKALPLDRVTVRLRHSKVHAKDCAECETKTGTLDQIEREIAMEGTLDPDQRQKLIDIADKCPVHRTLTSEVRITT RTASR
Specific function: Unknown
COG id: COG1073
COG function: function code R; Hydrolases of the alpha/beta superfamily
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 43780; Mature: 43649
Theoretical pI: Translated: 6.72; Mature: 6.72
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 0.7 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 0.5 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPHERFQFSGSGGHKLAATLDLPDSEPVAYALFAHCFTCGKDVLAARRIATGLTGRGIAV CCCCCEEECCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEE LRFDFTGLGASEGEFANSTFSSNIADLVLAADHLRQTRKAPALLIGHSLGGAAVLAAAAR EEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHH IPEAEAVVTIAAPSDPAHVTRLFADHVTDIHEQGAVEVSLAGRPFPISRQFLDDIAEHNL CCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHCCH TEQIANLRRALLVLHSPTDDIVGIDNATRIFVAAKHPKSFISLAGADHLLSEKRDTGYVA HHHHHHHHHHEEEEECCCCCEEECCCCEEEEEEECCCHHHHHHHCHHHHHHCCCCCHHHH EVIASWAQRYLEPRPASAAENPESRDVVVRETGRGKFQQTVTVGPHRLKADEPIPVGGDD HHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCC TGPGPYDLLLAALGACTSMTLRLYAERKALPLDRVTVRLRHSKVHAKDCAECETKTGTLD CCCCHHHHHHHHHHHHHHHHHHEEHHHCCCCHHHHEEEEHHCCCCHHHHHHHHCCCCCHH QIEREIAMEGTLDPDQRQKLIDIADKCPVHRTLTSEVRITTRTASR HHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCC >Mature Secondary Structure PHERFQFSGSGGHKLAATLDLPDSEPVAYALFAHCFTCGKDVLAARRIATGLTGRGIAV CCCCEEECCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEE LRFDFTGLGASEGEFANSTFSSNIADLVLAADHLRQTRKAPALLIGHSLGGAAVLAAAAR EEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHH IPEAEAVVTIAAPSDPAHVTRLFADHVTDIHEQGAVEVSLAGRPFPISRQFLDDIAEHNL CCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHCCH TEQIANLRRALLVLHSPTDDIVGIDNATRIFVAAKHPKSFISLAGADHLLSEKRDTGYVA HHHHHHHHHHEEEEECCCCCEEECCCCEEEEEEECCCHHHHHHHCHHHHHHCCCCCHHHH EVIASWAQRYLEPRPASAAENPESRDVVVRETGRGKFQQTVTVGPHRLKADEPIPVGGDD HHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCC TGPGPYDLLLAALGACTSMTLRLYAERKALPLDRVTVRLRHSKVHAKDCAECETKTGTLD CCCCHHHHHHHHHHHHHHHHHHEEHHHCCCCHHHHEEEEHHCCCCHHHHHHHHCCCCCHH QIEREIAMEGTLDPDQRQKLIDIADKCPVHRTLTSEVRITTRTASR HHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA