| Definition | Nitrobacter winogradskyi Nb-255, complete genome. |
|---|---|
| Accession | NC_007406 |
| Length | 3,402,093 |
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The map label for this gene is thrS [H]
Identifier: 75676225
GI number: 75676225
Start: 2224074
End: 2226134
Strand: Direct
Name: thrS [H]
Synonym: Nwi_2035
Alternate gene names: 75676225
Gene position: 2224074-2226134 (Clockwise)
Preceding gene: 75676224
Following gene: 75676226
Centisome position: 65.37
GC content: 63.27
Gene sequence:
>2061_bases ATGTCCGAAAACCAAGACCCCGCCGGATTCCGGTACGGCCTCGCCAACCTGAAACCCGTCTCGCCCGCCGACAACGTCGT CCTCACCTTCCCCGACGGCGCGACACGCGAATTCCCGAAGAATACCACCGGCCTGGAAATCGCCAAGGGGATCTCGCCGT CGCTGGCCAAGCGCACGGTGGCCATGGCGCTCGACGGCATCGTCAACGATCTCGCCGACCCGATCGAACAGGACGCTACA ATTGAATTCATCAGCCGCGACGACCCTCGCGCGCTGGAACTGATCCGCCATGACGCCGCGCATGTGCTGGCGGAAGCCGT GCAGACATTGTGGCCGGGCACGCAGGTCACCATCGGCCCGGTGATCGAGAACGGCTTCTATTACGACTTCTTCCGCAACG AGCCGTTCTCGGTTGAGGATTTCGCCGCGATCGAGAAGAAGATGCGCGAGATCATCGCGCGCGACCAGCCCTTCACCAAG GATGTCTGGGACCGCGAGAAGACCAAGCAGGTGTTTCGCGACAAGGGCGAGGCCTTCAAGGTCGAACTCGTCGACGCCAT CCCCGGCAACGAGCCGATCCGGATCTACTACCAGGGTGACTGGTTCGATCTCTGCCGCGGCCCGCACATGACCTCGACCG GCAAGATCGGCAACGCGTTCAAGCTGATGAAGGTGGCCGGCGCTTACTGGCGCGGCGACAGCAACAATCCGATGCTGACG CGCATCTATGGCACCGCCTTCGCGAACCAGGCCGATCTCGACGCATACCTCAAGCAGATCGAGGAAGCCGAGAAGCGCGA CCACCGAAAGCTCGGCCGCGAACTCGACCTGTTCCACTTTCAGGAGGAAGGTCCGGGCGTGGTGTTCTGGCACGCCAAAG GCTGGACCATCTTCCAGGCCGTGATCGCCTACATGCGCCGGCGGCTCGCGGAAGATTATGACGAGGTCAACGCGCCGCAG ATGCTCGACAAGTCGCTGTGGGAGACGTCGGGACATTGGGAATGGTATCGCGAGAACATGTTCGCCGCGCAGTCCGCCGG CGATGAAGCCGAGGACAAGCGCTGGTTCACAATCAAGCCGATGAACTGTCCAGGCCATGTGCAACTCTTCAAGCACGGAC TCAAAAGCTACCGCGACCTGCCGCTGCGGCTCGCTGAATTCGGCGTCGTGCATCGCTACGAGCCGTCGGGCGCAATGCAC GGCCTGATGCGGGTGCGCGGCTTCACCCAGGACGACGCGCATGTTTTCTGCACCGAGGAGCAGCTCGCCGACGAGTGCCT CAAGATCAACGAGCTGATCTTGTCGACCTATGCCGATTTCGGCTTCGACGGTGAGCTGACGGTGAAGCTTTCGACGCGTC CCGAGAAGCGCGTGGGCTCGGACGCGGCGTGGGATCACGCCGAAGCGGTGATGGCGGATGTCCTCAAGCACATCGCGGCA TCGAACAACCGCATCAGGACCGAGACCAATCCCGGCGAGGGTGCGTTCTACGGGCCGAAGTTCGAGTACGTCCTGCGCGA TGCCATCGGCCGCGACTGGCAGTGCGGCACGACCCAGGTGGACTTCAACCTGCCGGAGCGGTTCGGCGCCTTCTACATCG ACGCGGACGGCGGCAAGAAGGCGCCGGTGATGGTGCATCGCGCGATCTGCGGATCGATCGAGCGCTTCATCGGCATCCTG ATCGAGCACTTCGCCGGCCACTTTCCGCTCTGGCTCGCGCCGGTGCAGGCGGTCGTCACCACCATTACGTCGGACGGCGA TGAATACGCGAAAGTGGTCGCGTCCGCCGCGCGGCGCGCGGGGCTTCGCGTCGAACTGGACCTGCGCAACGAAAAGATCA ACTACAAGGTGCGCGAGCACTCGCTGGCGAAGATCCCCGCCTTGCTCGTTGTCGGCAAAAAGGAGGCCGAGACCCAATCG GTGTCCATCCGCCGGCTCGGCAGCGACGGCCAGAAAGTGACGCCGACCGGCGAGGCCATTGCCGCGCTTGTAGCGGAAGC CGTTCCGCCGGATATCCAACGCATCAAGACAGCGCCCCAGAGCCTTTCCGCTTCTGATTGA
Upstream 100 bases:
>100_bases CCATGGGCCTTCACGGGTTGCACGCCGCAAATCGGCTGCTATACCGCAGCATCCCGCTTACCTGCGCTCGTTCGCAGGAG TGAGCCACAGGAGAGAGTGA
Downstream 100 bases:
>100_bases ATCAGAAGCGGGGCTCTATAATATTGTTTTGACGCGTTTTCTTCGCGCGAACCGGTGTCCGCTTCGCTCGAAAACGCTAT AGAGCATGATCCCGACCCGA
Product: threonyl-tRNA synthetase
Products: NA
Alternate protein names: Threonine--tRNA ligase; ThrRS [H]
Number of amino acids: Translated: 686; Mature: 685
Protein sequence:
>686_residues MSENQDPAGFRYGLANLKPVSPADNVVLTFPDGATREFPKNTTGLEIAKGISPSLAKRTVAMALDGIVNDLADPIEQDAT IEFISRDDPRALELIRHDAAHVLAEAVQTLWPGTQVTIGPVIENGFYYDFFRNEPFSVEDFAAIEKKMREIIARDQPFTK DVWDREKTKQVFRDKGEAFKVELVDAIPGNEPIRIYYQGDWFDLCRGPHMTSTGKIGNAFKLMKVAGAYWRGDSNNPMLT RIYGTAFANQADLDAYLKQIEEAEKRDHRKLGRELDLFHFQEEGPGVVFWHAKGWTIFQAVIAYMRRRLAEDYDEVNAPQ MLDKSLWETSGHWEWYRENMFAAQSAGDEAEDKRWFTIKPMNCPGHVQLFKHGLKSYRDLPLRLAEFGVVHRYEPSGAMH GLMRVRGFTQDDAHVFCTEEQLADECLKINELILSTYADFGFDGELTVKLSTRPEKRVGSDAAWDHAEAVMADVLKHIAA SNNRIRTETNPGEGAFYGPKFEYVLRDAIGRDWQCGTTQVDFNLPERFGAFYIDADGGKKAPVMVHRAICGSIERFIGIL IEHFAGHFPLWLAPVQAVVTTITSDGDEYAKVVASAARRAGLRVELDLRNEKINYKVREHSLAKIPALLVVGKKEAETQS VSIRRLGSDGQKVTPTGEAIAALVAEAVPPDIQRIKTAPQSLSASD
Sequences:
>Translated_686_residues MSENQDPAGFRYGLANLKPVSPADNVVLTFPDGATREFPKNTTGLEIAKGISPSLAKRTVAMALDGIVNDLADPIEQDAT IEFISRDDPRALELIRHDAAHVLAEAVQTLWPGTQVTIGPVIENGFYYDFFRNEPFSVEDFAAIEKKMREIIARDQPFTK DVWDREKTKQVFRDKGEAFKVELVDAIPGNEPIRIYYQGDWFDLCRGPHMTSTGKIGNAFKLMKVAGAYWRGDSNNPMLT RIYGTAFANQADLDAYLKQIEEAEKRDHRKLGRELDLFHFQEEGPGVVFWHAKGWTIFQAVIAYMRRRLAEDYDEVNAPQ MLDKSLWETSGHWEWYRENMFAAQSAGDEAEDKRWFTIKPMNCPGHVQLFKHGLKSYRDLPLRLAEFGVVHRYEPSGAMH GLMRVRGFTQDDAHVFCTEEQLADECLKINELILSTYADFGFDGELTVKLSTRPEKRVGSDAAWDHAEAVMADVLKHIAA SNNRIRTETNPGEGAFYGPKFEYVLRDAIGRDWQCGTTQVDFNLPERFGAFYIDADGGKKAPVMVHRAICGSIERFIGIL IEHFAGHFPLWLAPVQAVVTTITSDGDEYAKVVASAARRAGLRVELDLRNEKINYKVREHSLAKIPALLVVGKKEAETQS VSIRRLGSDGQKVTPTGEAIAALVAEAVPPDIQRIKTAPQSLSASD >Mature_685_residues SENQDPAGFRYGLANLKPVSPADNVVLTFPDGATREFPKNTTGLEIAKGISPSLAKRTVAMALDGIVNDLADPIEQDATI EFISRDDPRALELIRHDAAHVLAEAVQTLWPGTQVTIGPVIENGFYYDFFRNEPFSVEDFAAIEKKMREIIARDQPFTKD VWDREKTKQVFRDKGEAFKVELVDAIPGNEPIRIYYQGDWFDLCRGPHMTSTGKIGNAFKLMKVAGAYWRGDSNNPMLTR IYGTAFANQADLDAYLKQIEEAEKRDHRKLGRELDLFHFQEEGPGVVFWHAKGWTIFQAVIAYMRRRLAEDYDEVNAPQM LDKSLWETSGHWEWYRENMFAAQSAGDEAEDKRWFTIKPMNCPGHVQLFKHGLKSYRDLPLRLAEFGVVHRYEPSGAMHG LMRVRGFTQDDAHVFCTEEQLADECLKINELILSTYADFGFDGELTVKLSTRPEKRVGSDAAWDHAEAVMADVLKHIAAS NNRIRTETNPGEGAFYGPKFEYVLRDAIGRDWQCGTTQVDFNLPERFGAFYIDADGGKKAPVMVHRAICGSIERFIGILI EHFAGHFPLWLAPVQAVVTTITSDGDEYAKVVASAARRAGLRVELDLRNEKINYKVREHSLAKIPALLVVGKKEAETQSV SIRRLGSDGQKVTPTGEAIAALVAEAVPPDIQRIKTAPQSLSASD
Specific function: Thrs Is Also A Translational Repressor Protein, It Controls The Translation Of Its Own Gene By Binding To Its mRNA. [C]
COG id: COG0441
COG function: function code J; Threonyl-tRNA synthetase
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the class-II aminoacyl-tRNA synthetase family [H]
Homologues:
Organism=Homo sapiens, GI38202255, Length=624, Percent_Identity=41.1858974358974, Blast_Score=462, Evalue=1e-130, Organism=Homo sapiens, GI38570111, Length=607, Percent_Identity=39.5387149917628, Blast_Score=444, Evalue=1e-124, Organism=Homo sapiens, GI20070344, Length=619, Percent_Identity=37.9644588045234, Blast_Score=418, Evalue=1e-116, Organism=Escherichia coli, GI1788013, Length=626, Percent_Identity=50.7987220447284, Blast_Score=666, Evalue=0.0, Organism=Caenorhabditis elegans, GI71984184, Length=627, Percent_Identity=38.9154704944179, Blast_Score=447, Evalue=1e-126, Organism=Caenorhabditis elegans, GI71984192, Length=627, Percent_Identity=38.9154704944179, Blast_Score=447, Evalue=1e-126, Organism=Saccharomyces cerevisiae, GI6322112, Length=657, Percent_Identity=38.0517503805175, Blast_Score=437, Evalue=1e-123, Organism=Saccharomyces cerevisiae, GI6322654, Length=396, Percent_Identity=35.1010101010101, Blast_Score=271, Evalue=2e-73, Organism=Drosophila melanogaster, GI24583839, Length=642, Percent_Identity=39.0965732087227, Blast_Score=460, Evalue=1e-129, Organism=Drosophila melanogaster, GI24583842, Length=642, Percent_Identity=39.0965732087227, Blast_Score=460, Evalue=1e-129, Organism=Drosophila melanogaster, GI28574141, Length=642, Percent_Identity=39.0965732087227, Blast_Score=460, Evalue=1e-129,
Paralogues:
None
Copy number: 700 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002314 - InterPro: IPR006195 - InterPro: IPR004154 - InterPro: IPR012675 - InterPro: IPR004095 - InterPro: IPR012676 - InterPro: IPR002320 - InterPro: IPR018163 - InterPro: IPR012947 [H]
Pfam domain/function: PF03129 HGTP_anticodon; PF02824 TGS; PF00587 tRNA-synt_2b; PF07973 tRNA_SAD [H]
EC number: =6.1.1.3 [H]
Molecular weight: Translated: 76989; Mature: 76858
Theoretical pI: Translated: 5.66; Mature: 5.66
Prosite motif: PS50862 AA_TRNA_LIGASE_II
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSENQDPAGFRYGLANLKPVSPADNVVLTFPDGATREFPKNTTGLEIAKGISPSLAKRTV CCCCCCCCCCEECCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCHHHHCCCCHHHHHHHH AMALDGIVNDLADPIEQDATIEFISRDDPRALELIRHDAAHVLAEAVQTLWPGTQVTIGP HHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEE VIENGFYYDFFRNEPFSVEDFAAIEKKMREIIARDQPFTKDVWDREKTKQVFRDKGEAFK EECCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCEEE VELVDAIPGNEPIRIYYQGDWFDLCRGPHMTSTGKIGNAFKLMKVAGAYWRGDSNNPMLT EEEEECCCCCCCEEEEECCCHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCEEE RIYGTAFANQADLDAYLKQIEEAEKRDHRKLGRELDLFHFQEEGPGVVFWHAKGWTIFQA EEECHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCEEEEEECCCHHHHHH VIAYMRRRLAEDYDEVNAPQMLDKSLWETSGHWEWYRENMFAAQSAGDEAEDKRWFTIKP HHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCEEEEEEC MNCPGHVQLFKHGLKSYRDLPLRLAEFGVVHRYEPSGAMHGLMRVRGFTQDDAHVFCTEE CCCCCHHHHHHHHHHHHHCCCHHHHHHCCEEEECCCHHHHHHHHHCCCCCCCCEEEECHH QLADECLKINELILSTYADFGFDGELTVKLSTRPEKRVGSDAAWDHAEAVMADVLKHIAA HHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHCCCCCCHHHHHHHHHHHHHHHHC SNNRIRTETNPGEGAFYGPKFEYVLRDAIGRDWQCGTTQVDFNLPERFGAFYIDADGGKK CCCEEEECCCCCCCCEECCHHHHHHHHHCCCCCCCCCEEEECCCHHHHCEEEEECCCCCC APVMVHRAICGSIERFIGILIEHFAGHFPLWLAPVQAVVTTITSDGDEYAKVVASAARRA CHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHC GLRVELDLRNEKINYKVREHSLAKIPALLVVGKKEAETQSVSIRRLGSDGQKVTPTGEAI CCEEEEEECCCCCCEEEHHHHHHHCCEEEEECCCCCCCHHHHHEECCCCCCEECCCHHHH AALVAEAVPPDIQRIKTAPQSLSASD HHHHHHHCCCHHHHHHCCCCCCCCCC >Mature Secondary Structure SENQDPAGFRYGLANLKPVSPADNVVLTFPDGATREFPKNTTGLEIAKGISPSLAKRTV CCCCCCCCCEECCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCHHHHCCCCHHHHHHHH AMALDGIVNDLADPIEQDATIEFISRDDPRALELIRHDAAHVLAEAVQTLWPGTQVTIGP HHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEE VIENGFYYDFFRNEPFSVEDFAAIEKKMREIIARDQPFTKDVWDREKTKQVFRDKGEAFK EECCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCEEE VELVDAIPGNEPIRIYYQGDWFDLCRGPHMTSTGKIGNAFKLMKVAGAYWRGDSNNPMLT EEEEECCCCCCCEEEEECCCHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCEEE RIYGTAFANQADLDAYLKQIEEAEKRDHRKLGRELDLFHFQEEGPGVVFWHAKGWTIFQA EEECHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCEEEEEECCCHHHHHH VIAYMRRRLAEDYDEVNAPQMLDKSLWETSGHWEWYRENMFAAQSAGDEAEDKRWFTIKP HHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCEEEEEEC MNCPGHVQLFKHGLKSYRDLPLRLAEFGVVHRYEPSGAMHGLMRVRGFTQDDAHVFCTEE CCCCCHHHHHHHHHHHHHCCCHHHHHHCCEEEECCCHHHHHHHHHCCCCCCCCEEEECHH QLADECLKINELILSTYADFGFDGELTVKLSTRPEKRVGSDAAWDHAEAVMADVLKHIAA HHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHCCCCCCHHHHHHHHHHHHHHHHC SNNRIRTETNPGEGAFYGPKFEYVLRDAIGRDWQCGTTQVDFNLPERFGAFYIDADGGKK CCCEEEECCCCCCCCEECCHHHHHHHHHCCCCCCCCCEEEECCCHHHHCEEEEECCCCCC APVMVHRAICGSIERFIGILIEHFAGHFPLWLAPVQAVVTTITSDGDEYAKVVASAARRA CHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHC GLRVELDLRNEKINYKVREHSLAKIPALLVVGKKEAETQSVSIRRLGSDGQKVTPTGEAI CCEEEEEECCCCCCEEEHHHHHHHCCEEEEECCCCCCCHHHHHEECCCCCCEECCCHHHH AALVAEAVPPDIQRIKTAPQSLSASD HHHHHHHCCCHHHHHHCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA