Click here to switch to the map view.

The map label for this gene is cycH [H]

Identifier: 75675384

GI number: 75675384

Start: 1297055

End: 1298158

Strand: Direct

Name: cycH [H]

Synonym: Nwi_1191

Alternate gene names: 75675384

Gene position: 1297055-1298158 (Clockwise)

Preceding gene: 75675383

Following gene: 75675385

Centisome position: 38.13

GC content: 69.75

Gene sequence:

>1104_bases
ATGACGGTGTGGTTTGTGTTCGCGCTGATGACCGCCGGTGCGGCTTTCGCGGTGCTGTGGCCGCTCGGTCGGTCAGGCAG
TCGGCGAACCTCGGGCGGCAGCGAGACCACGGTTTACCGCGACCAACTGGCCGAGGTCGGGCGCGATGCCGCCGCCGGCC
TGATCGGCGAGGCGGAGGCGGCTGCGGCGCGGGTCGAGATCGGGCGCCGGCTTCTGGAAGCGGCTGACGCGGAACGTCAT
CAGCCGCAGGATTCGAAACTCTGGCTGCGCCGTGCGGTGGCGGTGGTCGCGCTGGCGGGAATCCCGTTGCTGGCGTTCGC
GACCTACCTCCCTCTGGGATCGCCGCAAATGCCCGATTTCCCCCTCGCGGCGCGCATTCAAACCGCCGATGCGTCGCAAT
CCCTCGACAGCCTCGTGGCGCGTGTCGAATCGCACCTGGAGAAGAATCCCGGCGACGGCCGGGGCTGGACCGTACTGGCG
CCGATACTCGCGAAGCTCGGCCGCTTCGACGACGCGGCGCGCGCCTATCGCAACGTGATCACGTATGAGGGCGAGACCGC
GCCGCGCCGCGCCGATCTCGGGGCGGCGATCGCGGGGGCGGCCAACGGCATCGTCACCGCCGAGGCGAAGAAGGAGTTCG
AGCGGGCGCTCGCCCTGAACCCGCAGGAGGCGAAGGCGCGCTTTTTCCTTGGAATGGCCGCGCAGCAGGACGGCCGCAGC
GCCGACGCCATGAAGATCTGGAAAGCCCTGCTGGCCGATGCGCCTGCGGATGCGGAATGGCGCGTGACCGTGCAGGAGGC
GCTGGCGCAGCTCGGGGACGGCGCGCCTCGCCCGACGGAAGAAGCGGTGGCCGCGGCGAGCGACATGAACGAAGCGGATC
GCTCCGCGATGATCCACACGATGGTCGACCGGCTGGCGGCGCGCCTGAAGCAGGACGGCAACGATGTCGAGGGATGGCTG
CGCCTCGCCCGCGCCTATATGGTGCTCAATCAGCCGGAGAAGTCGCGCGCCGTGCGCGATGACGCGCGCCGCGCGCTCGG
GCGGAATGAAGCAGGGTTGCGCCAGCTCAACGAAGGGTTCAAGGCGCTCGGGATAGACGGATGA

Upstream 100 bases:

>100_bases
TTGTGCCGCAATTGTCAATTGCGTCCGTATTCCAGTCGTGATGTAACCCGGCCGTCGAACGGCCGCTCCCGGCGCCGCTA
CCAGATGGAACCCTGATGAG

Downstream 100 bases:

>100_bases
TCGAGGTATTTGCTTTGCGCGCAGGTGGTGAAACATGACTCGCAAGCAGCGGCGCTTGACGATGATCGGCGGAGCGCTCG
TGGTGCTCGGCATCGCGGCC

Product: cytochrome c-type biogenesis protein cycH / CcmH

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 367; Mature: 366

Protein sequence:

>367_residues
MTVWFVFALMTAGAAFAVLWPLGRSGSRRTSGGSETTVYRDQLAEVGRDAAAGLIGEAEAAAARVEIGRRLLEAADAERH
QPQDSKLWLRRAVAVVALAGIPLLAFATYLPLGSPQMPDFPLAARIQTADASQSLDSLVARVESHLEKNPGDGRGWTVLA
PILAKLGRFDDAARAYRNVITYEGETAPRRADLGAAIAGAANGIVTAEAKKEFERALALNPQEAKARFFLGMAAQQDGRS
ADAMKIWKALLADAPADAEWRVTVQEALAQLGDGAPRPTEEAVAAASDMNEADRSAMIHTMVDRLAARLKQDGNDVEGWL
RLARAYMVLNQPEKSRAVRDDARRALGRNEAGLRQLNEGFKALGIDG

Sequences:

>Translated_367_residues
MTVWFVFALMTAGAAFAVLWPLGRSGSRRTSGGSETTVYRDQLAEVGRDAAAGLIGEAEAAAARVEIGRRLLEAADAERH
QPQDSKLWLRRAVAVVALAGIPLLAFATYLPLGSPQMPDFPLAARIQTADASQSLDSLVARVESHLEKNPGDGRGWTVLA
PILAKLGRFDDAARAYRNVITYEGETAPRRADLGAAIAGAANGIVTAEAKKEFERALALNPQEAKARFFLGMAAQQDGRS
ADAMKIWKALLADAPADAEWRVTVQEALAQLGDGAPRPTEEAVAAASDMNEADRSAMIHTMVDRLAARLKQDGNDVEGWL
RLARAYMVLNQPEKSRAVRDDARRALGRNEAGLRQLNEGFKALGIDG
>Mature_366_residues
TVWFVFALMTAGAAFAVLWPLGRSGSRRTSGGSETTVYRDQLAEVGRDAAAGLIGEAEAAAARVEIGRRLLEAADAERHQ
PQDSKLWLRRAVAVVALAGIPLLAFATYLPLGSPQMPDFPLAARIQTADASQSLDSLVARVESHLEKNPGDGRGWTVLAP
ILAKLGRFDDAARAYRNVITYEGETAPRRADLGAAIAGAANGIVTAEAKKEFERALALNPQEAKARFFLGMAAQQDGRSA
DAMKIWKALLADAPADAEWRVTVQEALAQLGDGAPRPTEEAVAAASDMNEADRSAMIHTMVDRLAARLKQDGNDVEGWLR
LARAYMVLNQPEKSRAVRDDARRALGRNEAGLRQLNEGFKALGIDG

Specific function: Required for the biogenesis of c-type cytochromes. Possible subunit of a heme lyase [H]

COG id: COG4235

COG function: function code O; Cytochrome c biogenesis factor

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein; Periplasmic side (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017560
- InterPro:   IPR013026
- InterPro:   IPR011990 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 39378; Mature: 39247

Theoretical pI: Translated: 6.34; Mature: 6.34

Prosite motif: PS50293 TPR_REGION

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTVWFVFALMTAGAAFAVLWPLGRSGSRRTSGGSETTVYRDQLAEVGRDAAAGLIGEAEA
CHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHH
AAARVEIGRRLLEAADAERHQPQDSKLWLRRAVAVVALAGIPLLAFATYLPLGSPQMPDF
HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
PLAARIQTADASQSLDSLVARVESHLEKNPGDGRGWTVLAPILAKLGRFDDAARAYRNVI
CHHHHEECCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHH
TYEGETAPRRADLGAAIAGAANGIVTAEAKKEFERALALNPQEAKARFFLGMAAQQDGRS
EECCCCCCCHHHHHHHHHHCCCCCEEHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCC
ADAMKIWKALLADAPADAEWRVTVQEALAQLGDGAPRPTEEAVAAASDMNEADRSAMIHT
HHHHHHHHHHHHCCCCCCCCEEEHHHHHHHHCCCCCCCHHHHHHHHHHCCHHHHHHHHHH
MVDRLAARLKQDGNDVEGWLRLARAYMVLNQPEKSRAVRDDARRALGRNEAGLRQLNEGF
HHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHCCH
KALGIDG
HHCCCCC
>Mature Secondary Structure 
TVWFVFALMTAGAAFAVLWPLGRSGSRRTSGGSETTVYRDQLAEVGRDAAAGLIGEAEA
HHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHH
AAARVEIGRRLLEAADAERHQPQDSKLWLRRAVAVVALAGIPLLAFATYLPLGSPQMPDF
HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
PLAARIQTADASQSLDSLVARVESHLEKNPGDGRGWTVLAPILAKLGRFDDAARAYRNVI
CHHHHEECCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHH
TYEGETAPRRADLGAAIAGAANGIVTAEAKKEFERALALNPQEAKARFFLGMAAQQDGRS
EECCCCCCCHHHHHHHHHHCCCCCEEHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCC
ADAMKIWKALLADAPADAEWRVTVQEALAQLGDGAPRPTEEAVAAASDMNEADRSAMIHT
HHHHHHHHHHHHCCCCCCCCEEEHHHHHHHHCCCCCCCHHHHHHHHHHCCHHHHHHHHHH
MVDRLAARLKQDGNDVEGWLRLARAYMVLNQPEKSRAVRDDARRALGRNEAGLRQLNEGF
HHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHCCH
KALGIDG
HHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8231805; 12597275 [H]