Definition Nitrobacter winogradskyi Nb-255, complete genome.
Accession NC_007406
Length 3,402,093

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The map label for this gene is treY [H]

Identifier: 75675139

GI number: 75675139

Start: 1037949

End: 1040795

Strand: Direct

Name: treY [H]

Synonym: Nwi_0946

Alternate gene names: 75675139

Gene position: 1037949-1040795 (Clockwise)

Preceding gene: 75675138

Following gene: 75675140

Centisome position: 30.51

GC content: 63.44

Gene sequence:

>2847_bases
ATGACCCTTGATCGATCGGACCAGCCTGACCGCAAGCCGATCCCGCGCGCCACCTACCGGTTGCAACTTAACAAGGACTT
CGGCTTCGACCAGGCCGCGGCGCTTGCGCCTTATCTCGCCAGGCTAGGAATAAGCCATGTCTATTGCTCGCCCTATCTGC
GGGCACGCCCCGGCAGCACCCATGGCTACGACATCGTCAGCCACACCGAGCTGAATCCGGAGTTGGGCGACACCGCGGCC
TTCGAGCGGATGGTTGCCGCGTTCCGGACGAACGGTCTCGGCCAGATTCTTGATTTCGTCCCGAACCACATGGGGGTGGG
CGGCGCGGACAACCCGTGGTGGCTGGACGTGCTCGAATGGGGACCGGATTCGCAATTCGCGGGCTGGTTCGATATCGACT
GGGAGTCGGATCGCCGTTACCTGCTAGGCAAGCTGCTTGTGCCGTTTCTGGGCGATCAGTACGGCGCCGAGTTGCAGTCG
GGCGCGCTCCGCCTGAGGTTCGATGCCGAAGCCGGATCCCTCGCCGTATGGGCATATGAAACCCACAAGCTGCCCATTAG
CCCGCTTCATTACGAACGCATTCTCGGCGATCGTCATCCGGACCTTGAACGCATCGGCGATGCGTTTGCCCATCTCTCGA
CATGGCGGCCGCATATCGACCGCCGGGCTGCCGATCTCAAACTGGAACTGGCCGAGTCCGTTCGGTGCAATCCCGATCTG
GCGGTCGCGATCGAGGCCGCGGTGGACCGGTTCAACGGCGAGGCTGGCGACCTGCAAAGCTGGTCGAAGCTGGACGCGCT
GATCCGCGACCAGCACTGGCGCGCGGCCCACTTCCGCGTCGCGGCCGACGACATCAACTACCGGCGTTTCTTCAACATCA
ATGACCTGGCCGGGGTCCGGATGGAGTTGCCCCAGCTTTTCGACCACGCGCATTCGCTGGTGTTCCGGTTGCTCGAGCAG
GGCGTGCTCGACGGAATCCGGCTGGACCACGTCGACGGACTTCTCGATCCGAAGGGATACTTTTCACGCCTGCGGGAGAA
GGCCCCGCGTCCATTTTATCTCGTTGTCGAGAAGATCCTCGCCTCTCATGAAAACCTTCGGGATGACTGGGATGTCGAGG
GGACGACCGGTTACGAGTTCACGAACCTTGTGACCGGTCTTCTGAACGACCCCGCAGGTCAGGAGAATCTCACTCGCCTC
TACGCCGACTTCACCGGTGAGCGGGCGTCGTTCAGCGACATCGTCCGCGATTCGAAAATGCGGATCATGGAAAACGAGAT
GGCGAGCGAACTGAACGTGCTGGCCAGGGAGGCGGCGCGGGTGGCGCGCTCGAACCCGCGGACCGCCGATTTCACCAACA
ACGTCCTGCAGCGGGCGCTGAAGGAAATCATCGCGGTCTTCCCCGTCTACCGCACCTATGTTGACGGGTGCGGCGCGCCG
ACCCCTGCCGACCGCCGCGATATTGATTGGGCCATGGCGCAGGCCCGCCGCAATGGCGCCGCCCTGGACCCCAGCGTTTT
CGATTTCCTCCACCAGCTACTGACCTGCGACCTCGTCGCCGGGCCGCGCAGCGGCTTCAGCCGGGTGGAGGTGGTCCGTG
TCGCCATGCGCGCACAGCAATACAGCGGCCCCGTGATGGCCAAGGGGCTCGAGGATACCGCCTTCTATCGCTACAACCGG
ATGCTGGCGCTGAACGAGGTCGGCGGCCACCCCGACCAGTTCAGCGTAAGCATATCCGCCTTTCATCATGCCAACGCGCA
GCGGGCGAAACGAACGCCGCATGCCATGCTGAGCACCGCCACGCACGACACCAAGCGCGGCGAGGATACGCGCGCGCGGC
TGGCGGTGCTGTCGGAGATACCGGACGACTGGGCTCAGCACGTTGCGCTGTGGAGCCGGATGCTGCGGGCGCGCAACGCA
GGAAATGCCGACGAAGTGCCGCCCGATCGCAATGACGAATATGCGTTCTATCAACTCCTGCTTGGGGTATGGCCGGCCCG
ACTCTCGGCGGGCCAGCTTGATCCGGGGGAAGTGGACGCATTTCGCCAGCGGATCGAAGGCGCCATGACGAAAGCCATGC
GCGAAGCCAAGGTCCATACGACCTGGGCCGCGCCAAACGCCGCATACGAAGACGCCGTGCTGGAGTTCATTGGCTATGCG
CTGGACACCTCGCGCACCAATCCCTTCCTTGAGTCCTTTTCTGCGTTTCAGCAGCGCGTGGCCACCCTTGGCGCTTTGAA
CAGTCTCATTCAGGTTGTGCTGAAACTCACGGCGCCCGGCGTGCCGGATATCTATCAGGGCACGGAGCTCTGGGACTTCA
GCATGGTCGATCCGGATAATCGTCGCGCCGTCGATTACGACACCCGGAGAACATCACTGGCATCCCTGGAATCCGGCGAG
GGTGATCTTGCGGAGCTTCTTGAAAACTGGCGTGACGGCCGTTTGAAACTCCGCCTCATTGCCGAGACGTTGGCGCTGCG
CCGGCGCGAACCCGAACTGTTCGTGGACGGCTCCTATGAAGCGCTCCCTGCCACAGGGCCGCAGGCCGACCGTCTCTGCG
CATTCATGCGCGCGGGCGAACATAGCGCGCTGGTGACCGCGGTAGCTCTGTACCCGTCCCGTGGGCATCAGGCTGAGACG
TGGGGTGACTGCAACCTCGCTCTGCCGTCCGAGGCCGCTCCGCAGCGATGGACTGAACTGTTCAGCGGACGTGAACTCAC
GCTTTCGCAAGGATCGCTTCTGGCCCGCGACCTGTTCGCCAGCCTCCCTGTGGCGCTGCTTACGCCTTCCGCCTCGGATT
CCACCAGAAGCGGAAAGGCTCTGGCGGCGGAGCCCGTGATAGTCTAA

Upstream 100 bases:

>100_bases
AGTTGAAAGAGACTTTCTCCCACCGCACGGCAGCCCTCGTGGATTCGGGTCAACGTATCGGCGACCTCTTTGATAGCATC
AATCGGCGGCGGACATACGG

Downstream 100 bases:

>100_bases
GAAACCATTACAGTAATAGAAGCCGAAGCCATCCCCACGAATAGACATCAGCCCTATCAGTCTTGAACGGAAGGCGCCGC
GACAGCGGCTCTCCTTTCTT

Product: alpha amylase

Products: NA

Alternate protein names: (1,4)-alpha-D-glucan 1-alpha-D-glucosylmutase [H]

Number of amino acids: Translated: 948; Mature: 947

Protein sequence:

>948_residues
MTLDRSDQPDRKPIPRATYRLQLNKDFGFDQAAALAPYLARLGISHVYCSPYLRARPGSTHGYDIVSHTELNPELGDTAA
FERMVAAFRTNGLGQILDFVPNHMGVGGADNPWWLDVLEWGPDSQFAGWFDIDWESDRRYLLGKLLVPFLGDQYGAELQS
GALRLRFDAEAGSLAVWAYETHKLPISPLHYERILGDRHPDLERIGDAFAHLSTWRPHIDRRAADLKLELAESVRCNPDL
AVAIEAAVDRFNGEAGDLQSWSKLDALIRDQHWRAAHFRVAADDINYRRFFNINDLAGVRMELPQLFDHAHSLVFRLLEQ
GVLDGIRLDHVDGLLDPKGYFSRLREKAPRPFYLVVEKILASHENLRDDWDVEGTTGYEFTNLVTGLLNDPAGQENLTRL
YADFTGERASFSDIVRDSKMRIMENEMASELNVLAREAARVARSNPRTADFTNNVLQRALKEIIAVFPVYRTYVDGCGAP
TPADRRDIDWAMAQARRNGAALDPSVFDFLHQLLTCDLVAGPRSGFSRVEVVRVAMRAQQYSGPVMAKGLEDTAFYRYNR
MLALNEVGGHPDQFSVSISAFHHANAQRAKRTPHAMLSTATHDTKRGEDTRARLAVLSEIPDDWAQHVALWSRMLRARNA
GNADEVPPDRNDEYAFYQLLLGVWPARLSAGQLDPGEVDAFRQRIEGAMTKAMREAKVHTTWAAPNAAYEDAVLEFIGYA
LDTSRTNPFLESFSAFQQRVATLGALNSLIQVVLKLTAPGVPDIYQGTELWDFSMVDPDNRRAVDYDTRRTSLASLESGE
GDLAELLENWRDGRLKLRLIAETLALRRREPELFVDGSYEALPATGPQADRLCAFMRAGEHSALVTAVALYPSRGHQAET
WGDCNLALPSEAAPQRWTELFSGRELTLSQGSLLARDLFASLPVALLTPSASDSTRSGKALAAEPVIV

Sequences:

>Translated_948_residues
MTLDRSDQPDRKPIPRATYRLQLNKDFGFDQAAALAPYLARLGISHVYCSPYLRARPGSTHGYDIVSHTELNPELGDTAA
FERMVAAFRTNGLGQILDFVPNHMGVGGADNPWWLDVLEWGPDSQFAGWFDIDWESDRRYLLGKLLVPFLGDQYGAELQS
GALRLRFDAEAGSLAVWAYETHKLPISPLHYERILGDRHPDLERIGDAFAHLSTWRPHIDRRAADLKLELAESVRCNPDL
AVAIEAAVDRFNGEAGDLQSWSKLDALIRDQHWRAAHFRVAADDINYRRFFNINDLAGVRMELPQLFDHAHSLVFRLLEQ
GVLDGIRLDHVDGLLDPKGYFSRLREKAPRPFYLVVEKILASHENLRDDWDVEGTTGYEFTNLVTGLLNDPAGQENLTRL
YADFTGERASFSDIVRDSKMRIMENEMASELNVLAREAARVARSNPRTADFTNNVLQRALKEIIAVFPVYRTYVDGCGAP
TPADRRDIDWAMAQARRNGAALDPSVFDFLHQLLTCDLVAGPRSGFSRVEVVRVAMRAQQYSGPVMAKGLEDTAFYRYNR
MLALNEVGGHPDQFSVSISAFHHANAQRAKRTPHAMLSTATHDTKRGEDTRARLAVLSEIPDDWAQHVALWSRMLRARNA
GNADEVPPDRNDEYAFYQLLLGVWPARLSAGQLDPGEVDAFRQRIEGAMTKAMREAKVHTTWAAPNAAYEDAVLEFIGYA
LDTSRTNPFLESFSAFQQRVATLGALNSLIQVVLKLTAPGVPDIYQGTELWDFSMVDPDNRRAVDYDTRRTSLASLESGE
GDLAELLENWRDGRLKLRLIAETLALRRREPELFVDGSYEALPATGPQADRLCAFMRAGEHSALVTAVALYPSRGHQAET
WGDCNLALPSEAAPQRWTELFSGRELTLSQGSLLARDLFASLPVALLTPSASDSTRSGKALAAEPVIV
>Mature_947_residues
TLDRSDQPDRKPIPRATYRLQLNKDFGFDQAAALAPYLARLGISHVYCSPYLRARPGSTHGYDIVSHTELNPELGDTAAF
ERMVAAFRTNGLGQILDFVPNHMGVGGADNPWWLDVLEWGPDSQFAGWFDIDWESDRRYLLGKLLVPFLGDQYGAELQSG
ALRLRFDAEAGSLAVWAYETHKLPISPLHYERILGDRHPDLERIGDAFAHLSTWRPHIDRRAADLKLELAESVRCNPDLA
VAIEAAVDRFNGEAGDLQSWSKLDALIRDQHWRAAHFRVAADDINYRRFFNINDLAGVRMELPQLFDHAHSLVFRLLEQG
VLDGIRLDHVDGLLDPKGYFSRLREKAPRPFYLVVEKILASHENLRDDWDVEGTTGYEFTNLVTGLLNDPAGQENLTRLY
ADFTGERASFSDIVRDSKMRIMENEMASELNVLAREAARVARSNPRTADFTNNVLQRALKEIIAVFPVYRTYVDGCGAPT
PADRRDIDWAMAQARRNGAALDPSVFDFLHQLLTCDLVAGPRSGFSRVEVVRVAMRAQQYSGPVMAKGLEDTAFYRYNRM
LALNEVGGHPDQFSVSISAFHHANAQRAKRTPHAMLSTATHDTKRGEDTRARLAVLSEIPDDWAQHVALWSRMLRARNAG
NADEVPPDRNDEYAFYQLLLGVWPARLSAGQLDPGEVDAFRQRIEGAMTKAMREAKVHTTWAAPNAAYEDAVLEFIGYAL
DTSRTNPFLESFSAFQQRVATLGALNSLIQVVLKLTAPGVPDIYQGTELWDFSMVDPDNRRAVDYDTRRTSLASLESGEG
DLAELLENWRDGRLKLRLIAETLALRRREPELFVDGSYEALPATGPQADRLCAFMRAGEHSALVTAVALYPSRGHQAETW
GDCNLALPSEAAPQRWTELFSGRELTLSQGSLLARDLFASLPVALLTPSASDSTRSGKALAAEPVIV

Specific function: Catalyzes the conversion of maltooligosaccharide into the non-reducing saccharide, maltooligosyl trehalose (alpha- maltooligosyl alpha-D-glucoside) by intramolecular transglycosylation [H]

COG id: COG3280

COG function: function code G; Maltooligosyl trehalose synthase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyl hydrolase 13 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006047
- InterPro:   IPR017853
- InterPro:   IPR013781
- InterPro:   IPR013797
- InterPro:   IPR012767 [H]

Pfam domain/function: PF00128 Alpha-amylase [H]

EC number: =5.4.99.15 [H]

Molecular weight: Translated: 105952; Mature: 105821

Theoretical pI: Translated: 5.48; Mature: 5.48

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTLDRSDQPDRKPIPRATYRLQLNKDFGFDQAAALAPYLARLGISHVYCSPYLRARPGST
CCCCCCCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHCCCHHEECCCCCCCCCCC
HGYDIVSHTELNPELGDTAAFERMVAAFRTNGLGQILDFVPNHMGVGGADNPWWLDVLEW
CCCEEEECCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCCCCEEEEEEEC
GPDSQFAGWFDIDWESDRRYLLGKLLVPFLGDQYGAELQSGALRLRFDAEAGSLAVWAYE
CCCCCCCCEEECCCCCCHHHHHHHHHHHHHCCHHCCHHHCCCEEEEEECCCCCEEEEEEE
THKLPISPLHYERILGDRHPDLERIGDAFAHLSTWRPHIDRRAADLKLELAESVRCNPDL
CCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCC
AVAIEAAVDRFNGEAGDLQSWSKLDALIRDQHWRAAHFRVAADDINYRRFFNINDLAGVR
EEHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCEEEEEEECCCCCEEEECCCHHCCHH
MELPQLFDHAHSLVFRLLEQGVLDGIRLDHVDGLLDPKGYFSRLREKAPRPFYLVVEKIL
HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHH
ASHENLRDDWDVEGTTGYEFTNLVTGLLNDPAGQENLTRLYADFTGERASFSDIVRDSKM
HHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHH
RIMENEMASELNVLAREAARVARSNPRTADFTNNVLQRALKEIIAVFPVYRTYVDGCGAP
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
TPADRRDIDWAMAQARRNGAALDPSVFDFLHQLLTCDLVAGPRSGFSRVEVVRVAMRAQQ
CCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
YSGPVMAKGLEDTAFYRYNRMLALNEVGGHPDQFSVSISAFHHANAQRAKRTPHAMLSTA
HCCCHHCCCCCHHHHHHHHHEEEECCCCCCCCCEEEEEHHHHHCCHHHHHCCCHHHHHHC
THDTKRGEDTRARLAVLSEIPDDWAQHVALWSRMLRARNAGNADEVPPDRNDEYAFYQLL
CCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHH
LGVWPARLSAGQLDPGEVDAFRQRIEGAMTKAMREAKVHTTWAAPNAAYEDAVLEFIGYA
HHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCHHHHHHHHHHHHH
LDTSRTNPFLESFSAFQQRVATLGALNSLIQVVLKLTAPGVPDIYQGTELWDFSMVDPDN
HCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCC
RRAVDYDTRRTSLASLESGEGDLAELLENWRDGRLKLRLIAETLALRRREPELFVDGSYE
CCCCCCCHHHHHHHHCCCCCCHHHHHHHHHCCCCEEEHHHHHHHHHHCCCCCEEECCCCC
ALPATGPQADRLCAFMRAGEHSALVTAVALYPSRGHQAETWGDCNLALPSEAAPQRWTEL
CCCCCCCCHHHHHHHHHCCCCHHHHHHEEECCCCCCCCCCCCCCCEECCCCCCHHHHHHH
FSGRELTLSQGSLLARDLFASLPVALLTPSASDSTRSGKALAAEPVIV
HCCCEEEECCCHHHHHHHHHHCCCEEECCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
TLDRSDQPDRKPIPRATYRLQLNKDFGFDQAAALAPYLARLGISHVYCSPYLRARPGST
CCCCCCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHCCCHHEECCCCCCCCCCC
HGYDIVSHTELNPELGDTAAFERMVAAFRTNGLGQILDFVPNHMGVGGADNPWWLDVLEW
CCCEEEECCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCCCCEEEEEEEC
GPDSQFAGWFDIDWESDRRYLLGKLLVPFLGDQYGAELQSGALRLRFDAEAGSLAVWAYE
CCCCCCCCEEECCCCCCHHHHHHHHHHHHHCCHHCCHHHCCCEEEEEECCCCCEEEEEEE
THKLPISPLHYERILGDRHPDLERIGDAFAHLSTWRPHIDRRAADLKLELAESVRCNPDL
CCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCC
AVAIEAAVDRFNGEAGDLQSWSKLDALIRDQHWRAAHFRVAADDINYRRFFNINDLAGVR
EEHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCEEEEEEECCCCCEEEECCCHHCCHH
MELPQLFDHAHSLVFRLLEQGVLDGIRLDHVDGLLDPKGYFSRLREKAPRPFYLVVEKIL
HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHH
ASHENLRDDWDVEGTTGYEFTNLVTGLLNDPAGQENLTRLYADFTGERASFSDIVRDSKM
HHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHH
RIMENEMASELNVLAREAARVARSNPRTADFTNNVLQRALKEIIAVFPVYRTYVDGCGAP
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
TPADRRDIDWAMAQARRNGAALDPSVFDFLHQLLTCDLVAGPRSGFSRVEVVRVAMRAQQ
CCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
YSGPVMAKGLEDTAFYRYNRMLALNEVGGHPDQFSVSISAFHHANAQRAKRTPHAMLSTA
HCCCHHCCCCCHHHHHHHHHEEEECCCCCCCCCEEEEEHHHHHCCHHHHHCCCHHHHHHC
THDTKRGEDTRARLAVLSEIPDDWAQHVALWSRMLRARNAGNADEVPPDRNDEYAFYQLL
CCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHH
LGVWPARLSAGQLDPGEVDAFRQRIEGAMTKAMREAKVHTTWAAPNAAYEDAVLEFIGYA
HHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCHHHHHHHHHHHHH
LDTSRTNPFLESFSAFQQRVATLGALNSLIQVVLKLTAPGVPDIYQGTELWDFSMVDPDN
HCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCC
RRAVDYDTRRTSLASLESGEGDLAELLENWRDGRLKLRLIAETLALRRREPELFVDGSYE
CCCCCCCHHHHHHHHCCCCCCHHHHHHHHHCCCCEEEHHHHHHHHHHCCCCCEEECCCCC
ALPATGPQADRLCAFMRAGEHSALVTAVALYPSRGHQAETWGDCNLALPSEAAPQRWTEL
CCCCCCCCHHHHHHHHHCCCCHHHHHHEEECCCCCCCCCCCCCCCEECCCCCCHHHHHHH
FSGRELTLSQGSLLARDLFASLPVALLTPSASDSTRSGKALAAEPVIV
HCCCEEEECCCHHHHHHHHHHCCCEEECCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8605217; 8611744 [H]