| Definition | Nitrobacter winogradskyi Nb-255, complete genome. |
|---|---|
| Accession | NC_007406 |
| Length | 3,402,093 |
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The map label for this gene is treY [H]
Identifier: 75675139
GI number: 75675139
Start: 1037949
End: 1040795
Strand: Direct
Name: treY [H]
Synonym: Nwi_0946
Alternate gene names: 75675139
Gene position: 1037949-1040795 (Clockwise)
Preceding gene: 75675138
Following gene: 75675140
Centisome position: 30.51
GC content: 63.44
Gene sequence:
>2847_bases ATGACCCTTGATCGATCGGACCAGCCTGACCGCAAGCCGATCCCGCGCGCCACCTACCGGTTGCAACTTAACAAGGACTT CGGCTTCGACCAGGCCGCGGCGCTTGCGCCTTATCTCGCCAGGCTAGGAATAAGCCATGTCTATTGCTCGCCCTATCTGC GGGCACGCCCCGGCAGCACCCATGGCTACGACATCGTCAGCCACACCGAGCTGAATCCGGAGTTGGGCGACACCGCGGCC TTCGAGCGGATGGTTGCCGCGTTCCGGACGAACGGTCTCGGCCAGATTCTTGATTTCGTCCCGAACCACATGGGGGTGGG CGGCGCGGACAACCCGTGGTGGCTGGACGTGCTCGAATGGGGACCGGATTCGCAATTCGCGGGCTGGTTCGATATCGACT GGGAGTCGGATCGCCGTTACCTGCTAGGCAAGCTGCTTGTGCCGTTTCTGGGCGATCAGTACGGCGCCGAGTTGCAGTCG GGCGCGCTCCGCCTGAGGTTCGATGCCGAAGCCGGATCCCTCGCCGTATGGGCATATGAAACCCACAAGCTGCCCATTAG CCCGCTTCATTACGAACGCATTCTCGGCGATCGTCATCCGGACCTTGAACGCATCGGCGATGCGTTTGCCCATCTCTCGA CATGGCGGCCGCATATCGACCGCCGGGCTGCCGATCTCAAACTGGAACTGGCCGAGTCCGTTCGGTGCAATCCCGATCTG GCGGTCGCGATCGAGGCCGCGGTGGACCGGTTCAACGGCGAGGCTGGCGACCTGCAAAGCTGGTCGAAGCTGGACGCGCT GATCCGCGACCAGCACTGGCGCGCGGCCCACTTCCGCGTCGCGGCCGACGACATCAACTACCGGCGTTTCTTCAACATCA ATGACCTGGCCGGGGTCCGGATGGAGTTGCCCCAGCTTTTCGACCACGCGCATTCGCTGGTGTTCCGGTTGCTCGAGCAG GGCGTGCTCGACGGAATCCGGCTGGACCACGTCGACGGACTTCTCGATCCGAAGGGATACTTTTCACGCCTGCGGGAGAA GGCCCCGCGTCCATTTTATCTCGTTGTCGAGAAGATCCTCGCCTCTCATGAAAACCTTCGGGATGACTGGGATGTCGAGG GGACGACCGGTTACGAGTTCACGAACCTTGTGACCGGTCTTCTGAACGACCCCGCAGGTCAGGAGAATCTCACTCGCCTC TACGCCGACTTCACCGGTGAGCGGGCGTCGTTCAGCGACATCGTCCGCGATTCGAAAATGCGGATCATGGAAAACGAGAT GGCGAGCGAACTGAACGTGCTGGCCAGGGAGGCGGCGCGGGTGGCGCGCTCGAACCCGCGGACCGCCGATTTCACCAACA ACGTCCTGCAGCGGGCGCTGAAGGAAATCATCGCGGTCTTCCCCGTCTACCGCACCTATGTTGACGGGTGCGGCGCGCCG ACCCCTGCCGACCGCCGCGATATTGATTGGGCCATGGCGCAGGCCCGCCGCAATGGCGCCGCCCTGGACCCCAGCGTTTT CGATTTCCTCCACCAGCTACTGACCTGCGACCTCGTCGCCGGGCCGCGCAGCGGCTTCAGCCGGGTGGAGGTGGTCCGTG TCGCCATGCGCGCACAGCAATACAGCGGCCCCGTGATGGCCAAGGGGCTCGAGGATACCGCCTTCTATCGCTACAACCGG ATGCTGGCGCTGAACGAGGTCGGCGGCCACCCCGACCAGTTCAGCGTAAGCATATCCGCCTTTCATCATGCCAACGCGCA GCGGGCGAAACGAACGCCGCATGCCATGCTGAGCACCGCCACGCACGACACCAAGCGCGGCGAGGATACGCGCGCGCGGC TGGCGGTGCTGTCGGAGATACCGGACGACTGGGCTCAGCACGTTGCGCTGTGGAGCCGGATGCTGCGGGCGCGCAACGCA GGAAATGCCGACGAAGTGCCGCCCGATCGCAATGACGAATATGCGTTCTATCAACTCCTGCTTGGGGTATGGCCGGCCCG ACTCTCGGCGGGCCAGCTTGATCCGGGGGAAGTGGACGCATTTCGCCAGCGGATCGAAGGCGCCATGACGAAAGCCATGC GCGAAGCCAAGGTCCATACGACCTGGGCCGCGCCAAACGCCGCATACGAAGACGCCGTGCTGGAGTTCATTGGCTATGCG CTGGACACCTCGCGCACCAATCCCTTCCTTGAGTCCTTTTCTGCGTTTCAGCAGCGCGTGGCCACCCTTGGCGCTTTGAA CAGTCTCATTCAGGTTGTGCTGAAACTCACGGCGCCCGGCGTGCCGGATATCTATCAGGGCACGGAGCTCTGGGACTTCA GCATGGTCGATCCGGATAATCGTCGCGCCGTCGATTACGACACCCGGAGAACATCACTGGCATCCCTGGAATCCGGCGAG GGTGATCTTGCGGAGCTTCTTGAAAACTGGCGTGACGGCCGTTTGAAACTCCGCCTCATTGCCGAGACGTTGGCGCTGCG CCGGCGCGAACCCGAACTGTTCGTGGACGGCTCCTATGAAGCGCTCCCTGCCACAGGGCCGCAGGCCGACCGTCTCTGCG CATTCATGCGCGCGGGCGAACATAGCGCGCTGGTGACCGCGGTAGCTCTGTACCCGTCCCGTGGGCATCAGGCTGAGACG TGGGGTGACTGCAACCTCGCTCTGCCGTCCGAGGCCGCTCCGCAGCGATGGACTGAACTGTTCAGCGGACGTGAACTCAC GCTTTCGCAAGGATCGCTTCTGGCCCGCGACCTGTTCGCCAGCCTCCCTGTGGCGCTGCTTACGCCTTCCGCCTCGGATT CCACCAGAAGCGGAAAGGCTCTGGCGGCGGAGCCCGTGATAGTCTAA
Upstream 100 bases:
>100_bases AGTTGAAAGAGACTTTCTCCCACCGCACGGCAGCCCTCGTGGATTCGGGTCAACGTATCGGCGACCTCTTTGATAGCATC AATCGGCGGCGGACATACGG
Downstream 100 bases:
>100_bases GAAACCATTACAGTAATAGAAGCCGAAGCCATCCCCACGAATAGACATCAGCCCTATCAGTCTTGAACGGAAGGCGCCGC GACAGCGGCTCTCCTTTCTT
Product: alpha amylase
Products: NA
Alternate protein names: (1,4)-alpha-D-glucan 1-alpha-D-glucosylmutase [H]
Number of amino acids: Translated: 948; Mature: 947
Protein sequence:
>948_residues MTLDRSDQPDRKPIPRATYRLQLNKDFGFDQAAALAPYLARLGISHVYCSPYLRARPGSTHGYDIVSHTELNPELGDTAA FERMVAAFRTNGLGQILDFVPNHMGVGGADNPWWLDVLEWGPDSQFAGWFDIDWESDRRYLLGKLLVPFLGDQYGAELQS GALRLRFDAEAGSLAVWAYETHKLPISPLHYERILGDRHPDLERIGDAFAHLSTWRPHIDRRAADLKLELAESVRCNPDL AVAIEAAVDRFNGEAGDLQSWSKLDALIRDQHWRAAHFRVAADDINYRRFFNINDLAGVRMELPQLFDHAHSLVFRLLEQ GVLDGIRLDHVDGLLDPKGYFSRLREKAPRPFYLVVEKILASHENLRDDWDVEGTTGYEFTNLVTGLLNDPAGQENLTRL YADFTGERASFSDIVRDSKMRIMENEMASELNVLAREAARVARSNPRTADFTNNVLQRALKEIIAVFPVYRTYVDGCGAP TPADRRDIDWAMAQARRNGAALDPSVFDFLHQLLTCDLVAGPRSGFSRVEVVRVAMRAQQYSGPVMAKGLEDTAFYRYNR MLALNEVGGHPDQFSVSISAFHHANAQRAKRTPHAMLSTATHDTKRGEDTRARLAVLSEIPDDWAQHVALWSRMLRARNA GNADEVPPDRNDEYAFYQLLLGVWPARLSAGQLDPGEVDAFRQRIEGAMTKAMREAKVHTTWAAPNAAYEDAVLEFIGYA LDTSRTNPFLESFSAFQQRVATLGALNSLIQVVLKLTAPGVPDIYQGTELWDFSMVDPDNRRAVDYDTRRTSLASLESGE GDLAELLENWRDGRLKLRLIAETLALRRREPELFVDGSYEALPATGPQADRLCAFMRAGEHSALVTAVALYPSRGHQAET WGDCNLALPSEAAPQRWTELFSGRELTLSQGSLLARDLFASLPVALLTPSASDSTRSGKALAAEPVIV
Sequences:
>Translated_948_residues MTLDRSDQPDRKPIPRATYRLQLNKDFGFDQAAALAPYLARLGISHVYCSPYLRARPGSTHGYDIVSHTELNPELGDTAA FERMVAAFRTNGLGQILDFVPNHMGVGGADNPWWLDVLEWGPDSQFAGWFDIDWESDRRYLLGKLLVPFLGDQYGAELQS GALRLRFDAEAGSLAVWAYETHKLPISPLHYERILGDRHPDLERIGDAFAHLSTWRPHIDRRAADLKLELAESVRCNPDL AVAIEAAVDRFNGEAGDLQSWSKLDALIRDQHWRAAHFRVAADDINYRRFFNINDLAGVRMELPQLFDHAHSLVFRLLEQ GVLDGIRLDHVDGLLDPKGYFSRLREKAPRPFYLVVEKILASHENLRDDWDVEGTTGYEFTNLVTGLLNDPAGQENLTRL YADFTGERASFSDIVRDSKMRIMENEMASELNVLAREAARVARSNPRTADFTNNVLQRALKEIIAVFPVYRTYVDGCGAP TPADRRDIDWAMAQARRNGAALDPSVFDFLHQLLTCDLVAGPRSGFSRVEVVRVAMRAQQYSGPVMAKGLEDTAFYRYNR MLALNEVGGHPDQFSVSISAFHHANAQRAKRTPHAMLSTATHDTKRGEDTRARLAVLSEIPDDWAQHVALWSRMLRARNA GNADEVPPDRNDEYAFYQLLLGVWPARLSAGQLDPGEVDAFRQRIEGAMTKAMREAKVHTTWAAPNAAYEDAVLEFIGYA LDTSRTNPFLESFSAFQQRVATLGALNSLIQVVLKLTAPGVPDIYQGTELWDFSMVDPDNRRAVDYDTRRTSLASLESGE GDLAELLENWRDGRLKLRLIAETLALRRREPELFVDGSYEALPATGPQADRLCAFMRAGEHSALVTAVALYPSRGHQAET WGDCNLALPSEAAPQRWTELFSGRELTLSQGSLLARDLFASLPVALLTPSASDSTRSGKALAAEPVIV >Mature_947_residues TLDRSDQPDRKPIPRATYRLQLNKDFGFDQAAALAPYLARLGISHVYCSPYLRARPGSTHGYDIVSHTELNPELGDTAAF ERMVAAFRTNGLGQILDFVPNHMGVGGADNPWWLDVLEWGPDSQFAGWFDIDWESDRRYLLGKLLVPFLGDQYGAELQSG ALRLRFDAEAGSLAVWAYETHKLPISPLHYERILGDRHPDLERIGDAFAHLSTWRPHIDRRAADLKLELAESVRCNPDLA VAIEAAVDRFNGEAGDLQSWSKLDALIRDQHWRAAHFRVAADDINYRRFFNINDLAGVRMELPQLFDHAHSLVFRLLEQG VLDGIRLDHVDGLLDPKGYFSRLREKAPRPFYLVVEKILASHENLRDDWDVEGTTGYEFTNLVTGLLNDPAGQENLTRLY ADFTGERASFSDIVRDSKMRIMENEMASELNVLAREAARVARSNPRTADFTNNVLQRALKEIIAVFPVYRTYVDGCGAPT PADRRDIDWAMAQARRNGAALDPSVFDFLHQLLTCDLVAGPRSGFSRVEVVRVAMRAQQYSGPVMAKGLEDTAFYRYNRM LALNEVGGHPDQFSVSISAFHHANAQRAKRTPHAMLSTATHDTKRGEDTRARLAVLSEIPDDWAQHVALWSRMLRARNAG NADEVPPDRNDEYAFYQLLLGVWPARLSAGQLDPGEVDAFRQRIEGAMTKAMREAKVHTTWAAPNAAYEDAVLEFIGYAL DTSRTNPFLESFSAFQQRVATLGALNSLIQVVLKLTAPGVPDIYQGTELWDFSMVDPDNRRAVDYDTRRTSLASLESGEG DLAELLENWRDGRLKLRLIAETLALRRREPELFVDGSYEALPATGPQADRLCAFMRAGEHSALVTAVALYPSRGHQAETW GDCNLALPSEAAPQRWTELFSGRELTLSQGSLLARDLFASLPVALLTPSASDSTRSGKALAAEPVIV
Specific function: Catalyzes the conversion of maltooligosaccharide into the non-reducing saccharide, maltooligosyl trehalose (alpha- maltooligosyl alpha-D-glucoside) by intramolecular transglycosylation [H]
COG id: COG3280
COG function: function code G; Maltooligosyl trehalose synthase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the glycosyl hydrolase 13 family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR006047 - InterPro: IPR017853 - InterPro: IPR013781 - InterPro: IPR013797 - InterPro: IPR012767 [H]
Pfam domain/function: PF00128 Alpha-amylase [H]
EC number: =5.4.99.15 [H]
Molecular weight: Translated: 105952; Mature: 105821
Theoretical pI: Translated: 5.48; Mature: 5.48
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTLDRSDQPDRKPIPRATYRLQLNKDFGFDQAAALAPYLARLGISHVYCSPYLRARPGST CCCCCCCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHCCCHHEECCCCCCCCCCC HGYDIVSHTELNPELGDTAAFERMVAAFRTNGLGQILDFVPNHMGVGGADNPWWLDVLEW CCCEEEECCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCCCCEEEEEEEC GPDSQFAGWFDIDWESDRRYLLGKLLVPFLGDQYGAELQSGALRLRFDAEAGSLAVWAYE CCCCCCCCEEECCCCCCHHHHHHHHHHHHHCCHHCCHHHCCCEEEEEECCCCCEEEEEEE THKLPISPLHYERILGDRHPDLERIGDAFAHLSTWRPHIDRRAADLKLELAESVRCNPDL CCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCC AVAIEAAVDRFNGEAGDLQSWSKLDALIRDQHWRAAHFRVAADDINYRRFFNINDLAGVR EEHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCEEEEEEECCCCCEEEECCCHHCCHH MELPQLFDHAHSLVFRLLEQGVLDGIRLDHVDGLLDPKGYFSRLREKAPRPFYLVVEKIL HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHH ASHENLRDDWDVEGTTGYEFTNLVTGLLNDPAGQENLTRLYADFTGERASFSDIVRDSKM HHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHH RIMENEMASELNVLAREAARVARSNPRTADFTNNVLQRALKEIIAVFPVYRTYVDGCGAP HHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC TPADRRDIDWAMAQARRNGAALDPSVFDFLHQLLTCDLVAGPRSGFSRVEVVRVAMRAQQ CCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH YSGPVMAKGLEDTAFYRYNRMLALNEVGGHPDQFSVSISAFHHANAQRAKRTPHAMLSTA HCCCHHCCCCCHHHHHHHHHEEEECCCCCCCCCEEEEEHHHHHCCHHHHHCCCHHHHHHC THDTKRGEDTRARLAVLSEIPDDWAQHVALWSRMLRARNAGNADEVPPDRNDEYAFYQLL CCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHH LGVWPARLSAGQLDPGEVDAFRQRIEGAMTKAMREAKVHTTWAAPNAAYEDAVLEFIGYA HHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCHHHHHHHHHHHHH LDTSRTNPFLESFSAFQQRVATLGALNSLIQVVLKLTAPGVPDIYQGTELWDFSMVDPDN HCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCC RRAVDYDTRRTSLASLESGEGDLAELLENWRDGRLKLRLIAETLALRRREPELFVDGSYE CCCCCCCHHHHHHHHCCCCCCHHHHHHHHHCCCCEEEHHHHHHHHHHCCCCCEEECCCCC ALPATGPQADRLCAFMRAGEHSALVTAVALYPSRGHQAETWGDCNLALPSEAAPQRWTEL CCCCCCCCHHHHHHHHHCCCCHHHHHHEEECCCCCCCCCCCCCCCEECCCCCCHHHHHHH FSGRELTLSQGSLLARDLFASLPVALLTPSASDSTRSGKALAAEPVIV HCCCEEEECCCHHHHHHHHHHCCCEEECCCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure TLDRSDQPDRKPIPRATYRLQLNKDFGFDQAAALAPYLARLGISHVYCSPYLRARPGST CCCCCCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHCCCHHEECCCCCCCCCCC HGYDIVSHTELNPELGDTAAFERMVAAFRTNGLGQILDFVPNHMGVGGADNPWWLDVLEW CCCEEEECCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCCCCEEEEEEEC GPDSQFAGWFDIDWESDRRYLLGKLLVPFLGDQYGAELQSGALRLRFDAEAGSLAVWAYE CCCCCCCCEEECCCCCCHHHHHHHHHHHHHCCHHCCHHHCCCEEEEEECCCCCEEEEEEE THKLPISPLHYERILGDRHPDLERIGDAFAHLSTWRPHIDRRAADLKLELAESVRCNPDL CCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCC AVAIEAAVDRFNGEAGDLQSWSKLDALIRDQHWRAAHFRVAADDINYRRFFNINDLAGVR EEHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCEEEEEEECCCCCEEEECCCHHCCHH MELPQLFDHAHSLVFRLLEQGVLDGIRLDHVDGLLDPKGYFSRLREKAPRPFYLVVEKIL HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHH ASHENLRDDWDVEGTTGYEFTNLVTGLLNDPAGQENLTRLYADFTGERASFSDIVRDSKM HHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHH RIMENEMASELNVLAREAARVARSNPRTADFTNNVLQRALKEIIAVFPVYRTYVDGCGAP HHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC TPADRRDIDWAMAQARRNGAALDPSVFDFLHQLLTCDLVAGPRSGFSRVEVVRVAMRAQQ CCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH YSGPVMAKGLEDTAFYRYNRMLALNEVGGHPDQFSVSISAFHHANAQRAKRTPHAMLSTA HCCCHHCCCCCHHHHHHHHHEEEECCCCCCCCCEEEEEHHHHHCCHHHHHCCCHHHHHHC THDTKRGEDTRARLAVLSEIPDDWAQHVALWSRMLRARNAGNADEVPPDRNDEYAFYQLL CCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHH LGVWPARLSAGQLDPGEVDAFRQRIEGAMTKAMREAKVHTTWAAPNAAYEDAVLEFIGYA HHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCHHHHHHHHHHHHH LDTSRTNPFLESFSAFQQRVATLGALNSLIQVVLKLTAPGVPDIYQGTELWDFSMVDPDN HCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCC RRAVDYDTRRTSLASLESGEGDLAELLENWRDGRLKLRLIAETLALRRREPELFVDGSYE CCCCCCCHHHHHHHHCCCCCCHHHHHHHHHCCCCEEEHHHHHHHHHHCCCCCEEECCCCC ALPATGPQADRLCAFMRAGEHSALVTAVALYPSRGHQAETWGDCNLALPSEAAPQRWTEL CCCCCCCCHHHHHHHHHCCCCHHHHHHEEECCCCCCCCCCCCCCCEECCCCCCHHHHHHH FSGRELTLSQGSLLARDLFASLPVALLTPSASDSTRSGKALAAEPVIV HCCCEEEECCCHHHHHHHHHHCCCEEECCCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8605217; 8611744 [H]