Click here to switch to the map view.

The map label for this gene is ydiU [C]

Identifier: 75675138

GI number: 75675138

Start: 1036226

End: 1037743

Strand: Direct

Name: ydiU [C]

Synonym: Nwi_0945

Alternate gene names: 75675138

Gene position: 1036226-1037743 (Clockwise)

Preceding gene: 75675136

Following gene: 75675139

Centisome position: 30.46

GC content: 64.03

Gene sequence:

>1518_bases
ATGAGCCAGCTTGCAGAGAAGTCGTGTGTCACGCCCGCGGATGCGGCCGCGCCCATTCCGTTCGACAACACCTATGCGCG
GATGCCCGAGGCGTTCTATGAGCGCGTGAAACCGGCGGCGGTGGCGGCGCCGAGGCTCCTGCGCGTGAACGACGCGCTGG
CTCGCCAGTTGCGCATCGATCCGGCGTTCCTCAAGAGCCCCCAAGGCGTTGCTGTTCTTTCCGGCAATGAGATCGCGCCT
GGATCTGACCCCATCGCGCAGGCTTACGCGGGGCACCAGTTCGGAAGCTTCGTGCCTCAGCTCGGCGACGGCCGGGCCAT
CCTGCTCGGTGAGGTCGTGGACGCTGCGGGCAAAAGATTCGACATCCAGCTCAAAGGCTCTGGCAGGACCCGGTTCTCCC
GACGCGGCGATGGCCGCGCCGCGATCGGTCCCGTGATCCGCGAATACATCGTCAGCGAGGCCATGGCCGCGCTCGGCATT
CCGACGACGCGCTCGCTCGCCGTGGTGTTGACCGGCGAACAGGTCATGCGTGAGCGCGTACTGCCGGGCGGCATCCTGAC
CCGTGTTGCGTCGAGCCACCTGCGTGTCGGCACGTTTCAGTATTTCGCCGCGCGTGGCGACGTCGAAAACCTTCGCGCTC
TGGCCGATTATGCCATCGCCCGGCACTACCCGGATGTATGCTCGGCCGGGGACCCGTATCTGGCTTTCTTCGACGCGGTC
GTCGCAACGCTGGCCCGGCTGTCGGCACGATGGATGCTTGTCGGTTTCATCCATGGCGTTCTGAACACCGACAACACCGC
GATCGCGGGCGAGACGATCGATTACGGGCCGTGCGCGTTCATCGACGCCTATCGGCCTGACAAGGTTTTCAGTTCGATCG
ATCAGTTCGGACGCTATGCGTTTGAAAACCAGCCCGCCGCCGTGGCATGGAATCTGGCGCGGTTCGCCGAGGCCTTGCTG
CCGCTGATAGCGGATGGCGGCGCCAAGGCGATTGAATGCGCGAATGCCTCGATCGCCGCCTTCGATGATCACTTCAATGC
CGCGTATCTCTCGGGCATGCGCCGGAAGCTTGGCCTTGTCCGCGAGATGGAAGGCGATCTCGAACTCGCGTCCGACCTCC
TGACCCGGATGTCGGAGAATGGAGCGGACTTCACGTTGACGTTCCGCGCTCTGTGCGGGGCCGCCGACGATACGAAAGGC
GATGCGGAGGTGAGGGGGCTATTCGCAGACCCGTCCGCTTTCGACCAATGGACTGAACGGTGGCGGCAGCGCCTGTCGCT
TGAAGGGCAGTCGGCGGAGGTGAGACGCACCGACATGCTCTCCGTCAACCCGATGTTCATTCCGCGCAATCATCGCATCG
AGGCTGCCATTCGCGACGCGGAAGCAGGACGCTTCGAGACGTTCCACGAACTTGTCGAAGTGCTGTCGCATCCCTTCGAT
GACCAGCCGAAGTTTGCCGGCTATGCGAAGCCGCCCCGGCCGGAAGAGGAAGTCCGGCAGACTTTCTGCGGGACATAG

Upstream 100 bases:

>100_bases
ATGTCCAGCAGCCGATCCACCTGCGATCGATCCACGCGGCCGTTGAAGAGGTTCAGCGCCCGACCTTGCTTTTTCGGAAC
GGAGGAACGACTTTAAGCGC

Downstream 100 bases:

>100_bases
CGGGCGGGCCTCGTACAGGAATCGCGCCTCAATTCCTGTCGGCGCGACTTGTTCAAGTCGGCACGTCGCGATCACTCAGC
CGCTGGAACTCCCGCCACGT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 505; Mature: 504

Protein sequence:

>505_residues
MSQLAEKSCVTPADAAAPIPFDNTYARMPEAFYERVKPAAVAAPRLLRVNDALARQLRIDPAFLKSPQGVAVLSGNEIAP
GSDPIAQAYAGHQFGSFVPQLGDGRAILLGEVVDAAGKRFDIQLKGSGRTRFSRRGDGRAAIGPVIREYIVSEAMAALGI
PTTRSLAVVLTGEQVMRERVLPGGILTRVASSHLRVGTFQYFAARGDVENLRALADYAIARHYPDVCSAGDPYLAFFDAV
VATLARLSARWMLVGFIHGVLNTDNTAIAGETIDYGPCAFIDAYRPDKVFSSIDQFGRYAFENQPAAVAWNLARFAEALL
PLIADGGAKAIECANASIAAFDDHFNAAYLSGMRRKLGLVREMEGDLELASDLLTRMSENGADFTLTFRALCGAADDTKG
DAEVRGLFADPSAFDQWTERWRQRLSLEGQSAEVRRTDMLSVNPMFIPRNHRIEAAIRDAEAGRFETFHELVEVLSHPFD
DQPKFAGYAKPPRPEEEVRQTFCGT

Sequences:

>Translated_505_residues
MSQLAEKSCVTPADAAAPIPFDNTYARMPEAFYERVKPAAVAAPRLLRVNDALARQLRIDPAFLKSPQGVAVLSGNEIAP
GSDPIAQAYAGHQFGSFVPQLGDGRAILLGEVVDAAGKRFDIQLKGSGRTRFSRRGDGRAAIGPVIREYIVSEAMAALGI
PTTRSLAVVLTGEQVMRERVLPGGILTRVASSHLRVGTFQYFAARGDVENLRALADYAIARHYPDVCSAGDPYLAFFDAV
VATLARLSARWMLVGFIHGVLNTDNTAIAGETIDYGPCAFIDAYRPDKVFSSIDQFGRYAFENQPAAVAWNLARFAEALL
PLIADGGAKAIECANASIAAFDDHFNAAYLSGMRRKLGLVREMEGDLELASDLLTRMSENGADFTLTFRALCGAADDTKG
DAEVRGLFADPSAFDQWTERWRQRLSLEGQSAEVRRTDMLSVNPMFIPRNHRIEAAIRDAEAGRFETFHELVEVLSHPFD
DQPKFAGYAKPPRPEEEVRQTFCGT
>Mature_504_residues
SQLAEKSCVTPADAAAPIPFDNTYARMPEAFYERVKPAAVAAPRLLRVNDALARQLRIDPAFLKSPQGVAVLSGNEIAPG
SDPIAQAYAGHQFGSFVPQLGDGRAILLGEVVDAAGKRFDIQLKGSGRTRFSRRGDGRAAIGPVIREYIVSEAMAALGIP
TTRSLAVVLTGEQVMRERVLPGGILTRVASSHLRVGTFQYFAARGDVENLRALADYAIARHYPDVCSAGDPYLAFFDAVV
ATLARLSARWMLVGFIHGVLNTDNTAIAGETIDYGPCAFIDAYRPDKVFSSIDQFGRYAFENQPAAVAWNLARFAEALLP
LIADGGAKAIECANASIAAFDDHFNAAYLSGMRRKLGLVREMEGDLELASDLLTRMSENGADFTLTFRALCGAADDTKGD
AEVRGLFADPSAFDQWTERWRQRLSLEGQSAEVRRTDMLSVNPMFIPRNHRIEAAIRDAEAGRFETFHELVEVLSHPFDD
QPKFAGYAKPPRPEEEVRQTFCGT

Specific function: Unknown

COG id: COG0397

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0061 (SELO) family

Homologues:

Organism=Homo sapiens, GI32880229, Length=392, Percent_Identity=42.3469387755102, Blast_Score=268, Evalue=6e-72,
Organism=Escherichia coli, GI1787999, Length=455, Percent_Identity=41.5384615384615, Blast_Score=341, Evalue=8e-95,
Organism=Saccharomyces cerevisiae, GI6325034, Length=298, Percent_Identity=36.5771812080537, Blast_Score=183, Evalue=7e-47,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y945_NITWN (Q3SU34)

Other databases:

- EMBL:   CP000115
- RefSeq:   YP_317559.1
- STRING:   Q3SU34
- GeneID:   3674943
- GenomeReviews:   CP000115_GR
- KEGG:   nwi:Nwi_0945
- NMPDR:   fig|323098.3.peg.424
- eggNOG:   COG0397
- HOGENOM:   HBG683993
- OMA:   RRDIQLK
- PhylomeDB:   Q3SU34
- ProtClustDB:   PRK00029
- BioCyc:   NWIN323098:NWI_0945-MONOMER
- HAMAP:   MF_00692
- InterPro:   IPR003846

Pfam domain/function: PF02696 UPF0061

EC number: NA

Molecular weight: Translated: 55070; Mature: 54939

Theoretical pI: Translated: 5.54; Mature: 5.54

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSQLAEKSCVTPADAAAPIPFDNTYARMPEAFYERVKPAAVAAPRLLRVNDALARQLRID
CCCHHHHHCCCCCCCCCCCCCCCHHHHCCHHHHHHCCCHHHHCCHHHHHHHHHHHHHCCC
PAFLKSPQGVAVLSGNEIAPGSDPIAQAYAGHQFGSFVPQLGDGRAILLGEVVDAAGKRF
HHHHCCCCCEEEEECCCCCCCCCHHHHHHCCCHHHHHCCCCCCCCEEEEHHHHHHCCCEE
DIQLKGSGRTRFSRRGDGRAAIGPVIREYIVSEAMAALGIPTTRSLAVVLTGEQVMRERV
EEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECHHHHHHHC
LPGGILTRVASSHLRVGTFQYFAARGDVENLRALADYAIARHYPDVCSAGDPYLAFFDAV
CCCHHHHHHHHHHCCCCHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHCCCCHHHHHHHHH
VATLARLSARWMLVGFIHGVLNTDNTAIAGETIDYGPCAFIDAYRPDKVFSSIDQFGRYA
HHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCCCCEEEEECCCHHHHHHHHHHHHHHH
FENQPAAVAWNLARFAEALLPLIADGGAKAIECANASIAAFDDHFNAAYLSGMRRKLGLV
HCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCEEEECCCCHHHHHHHHHHHHHHH
REMEGDLELASDLLTRMSENGADFTLTFRALCGAADDTKGDAEVRGLFADPSAFDQWTER
HHHCCHHHHHHHHHHHHHCCCCCEEEEHHHHHCCCCCCCCCCCEEEEECCCHHHHHHHHH
WRQRLSLEGQSAEVRRTDMLSVNPMFIPRNHRIEAAIRDAEAGRFETFHELVEVLSHPFD
HHHHHCCCCCCCCHHHHHEEECCCEEECCCCCCHHHHHCCCCCHHHHHHHHHHHHHCCCC
DQPKFAGYAKPPRPEEEVRQTFCGT
CCCCCCCCCCCCCCHHHHHHHHCCC
>Mature Secondary Structure 
SQLAEKSCVTPADAAAPIPFDNTYARMPEAFYERVKPAAVAAPRLLRVNDALARQLRID
CCHHHHHCCCCCCCCCCCCCCCHHHHCCHHHHHHCCCHHHHCCHHHHHHHHHHHHHCCC
PAFLKSPQGVAVLSGNEIAPGSDPIAQAYAGHQFGSFVPQLGDGRAILLGEVVDAAGKRF
HHHHCCCCCEEEEECCCCCCCCCHHHHHHCCCHHHHHCCCCCCCCEEEEHHHHHHCCCEE
DIQLKGSGRTRFSRRGDGRAAIGPVIREYIVSEAMAALGIPTTRSLAVVLTGEQVMRERV
EEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECHHHHHHHC
LPGGILTRVASSHLRVGTFQYFAARGDVENLRALADYAIARHYPDVCSAGDPYLAFFDAV
CCCHHHHHHHHHHCCCCHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHCCCCHHHHHHHHH
VATLARLSARWMLVGFIHGVLNTDNTAIAGETIDYGPCAFIDAYRPDKVFSSIDQFGRYA
HHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCCCCEEEEECCCHHHHHHHHHHHHHHH
FENQPAAVAWNLARFAEALLPLIADGGAKAIECANASIAAFDDHFNAAYLSGMRRKLGLV
HCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCEEEECCCCHHHHHHHHHHHHHHH
REMEGDLELASDLLTRMSENGADFTLTFRALCGAADDTKGDAEVRGLFADPSAFDQWTER
HHHCCHHHHHHHHHHHHHCCCCCEEEEHHHHHCCCCCCCCCCCEEEEECCCHHHHHHHHH
WRQRLSLEGQSAEVRRTDMLSVNPMFIPRNHRIEAAIRDAEAGRFETFHELVEVLSHPFD
HHHHHCCCCCCCCHHHHHEEECCCEEECCCCCCHHHHHCCCCCHHHHHHHHHHHHHCCCC
DQPKFAGYAKPPRPEEEVRQTFCGT
CCCCCCCCCCCCCCHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA