| Definition | Nitrobacter winogradskyi Nb-255, complete genome. |
|---|---|
| Accession | NC_007406 |
| Length | 3,402,093 |
Click here to switch to the map view.
The map label for this gene is 75675049
Identifier: 75675049
GI number: 75675049
Start: 929793
End: 930581
Strand: Direct
Name: 75675049
Synonym: Nwi_0854
Alternate gene names: NA
Gene position: 929793-930581 (Clockwise)
Preceding gene: 75675048
Following gene: 75675050
Centisome position: 27.33
GC content: 63.88
Gene sequence:
>789_bases TTGCCTGTGGCCGGACGCCGGATGGCGTCTTTGGACCACGCCGGAATGCCTGTGATGATGCCCCGTGAATCCGATGGAGA GATGCGCCGCGACGGTTCGAGCGCTGCCGATGTGCAGCCGAAACACCCCGTCGCCAAGATGTTCGGTCCGCAGACCGACG ACGCTGACGTGAAGGATTTCACGGAGCGCTGCAAGGACGACCGGCATCACTTCAGGTTCATCGTGTCCCCCGAGGACGCG AGCGACATGGAGGATCTGAAGCGGTTCACCCGCGAACTGATGACGCAGGCGGAAAAGGACCTCGGCACGAAACTCGAATG GGTCGCCGTCGATCACTGGAATACCGACAACCCCCATGTCCACGTCATCGTGCGTGGTCGCGCCGATGATGGCCGCGACC TTGTGATCGACCGCGACTATATCAAGAGCGGCATGCGTGACCGTGCGCAGGACCTCATTACGCAGGAACTTAGCCCGCGC ACCGATCTCGACATCAGCCGCGCACTGAGCCGTCAGATCGAAGCCGAACGCTGGACCCAGCTCGACCGCCAGCTTGTCCG TGACGCCAACGAGGAGGGCGTGATCGACGTGGCGCCGTCACCGGATCGCCAGCCCGACGCATACCTGACGCAGAAGGTCG GGCGATTGCGCCACCTCGAACACCTCGGCCTTGCCGAGGCCATCGGCCCCGGCCAATGGGTCATGGCGGAAGGTGCGGAG TCGACCTTGCGCGAACTCGGCCAGCGCAACGACATCATCAAGCGGATGCACCGCGCCCTCGACGAGTAG
Upstream 100 bases:
>100_bases GCAGCCGCACGTCATGGTGACGACGGCCTTTTGAACAACGGAGCTCCACGCGAGCGGATGAGGACTGGTGCAGACCAAGG ACGACGGGACGCACGTTATC
Downstream 100 bases:
>100_bases GGCATCGCGCGCGGCGCGGCCGACTATGTCCTGGCCGGCGAGGCGCATGGCTCCCCGGTCATCGGCCGCCTGGTTGAACG CGGTCTCGACAACGAATTGA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 262; Mature: 261
Protein sequence:
>262_residues MPVAGRRMASLDHAGMPVMMPRESDGEMRRDGSSAADVQPKHPVAKMFGPQTDDADVKDFTERCKDDRHHFRFIVSPEDA SDMEDLKRFTRELMTQAEKDLGTKLEWVAVDHWNTDNPHVHVIVRGRADDGRDLVIDRDYIKSGMRDRAQDLITQELSPR TDLDISRALSRQIEAERWTQLDRQLVRDANEEGVIDVAPSPDRQPDAYLTQKVGRLRHLEHLGLAEAIGPGQWVMAEGAE STLRELGQRNDIIKRMHRALDE
Sequences:
>Translated_262_residues MPVAGRRMASLDHAGMPVMMPRESDGEMRRDGSSAADVQPKHPVAKMFGPQTDDADVKDFTERCKDDRHHFRFIVSPEDA SDMEDLKRFTRELMTQAEKDLGTKLEWVAVDHWNTDNPHVHVIVRGRADDGRDLVIDRDYIKSGMRDRAQDLITQELSPR TDLDISRALSRQIEAERWTQLDRQLVRDANEEGVIDVAPSPDRQPDAYLTQKVGRLRHLEHLGLAEAIGPGQWVMAEGAE STLRELGQRNDIIKRMHRALDE >Mature_261_residues PVAGRRMASLDHAGMPVMMPRESDGEMRRDGSSAADVQPKHPVAKMFGPQTDDADVKDFTERCKDDRHHFRFIVSPEDAS DMEDLKRFTRELMTQAEKDLGTKLEWVAVDHWNTDNPHVHVIVRGRADDGRDLVIDRDYIKSGMRDRAQDLITQELSPRT DLDISRALSRQIEAERWTQLDRQLVRDANEEGVIDVAPSPDRQPDAYLTQKVGRLRHLEHLGLAEAIGPGQWVMAEGAES TLRELGQRNDIIKRMHRALDE
Specific function: Unknown
COG id: COG3843
COG function: function code U; Type IV secretory pathway, VirD2 components (relaxase)
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 29905; Mature: 29774
Theoretical pI: Translated: 5.27; Mature: 5.27
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 4.6 %Met (Translated Protein) 5.0 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 4.2 %Met (Mature Protein) 4.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPVAGRRMASLDHAGMPVMMPRESDGEMRRDGSSAADVQPKHPVAKMFGPQTDDADVKDF CCCCCCHHHHHCCCCCCEECCCCCCCCHHHCCCCCCCCCCCCCHHHHCCCCCCCCHHHHH TERCKDDRHHFRFIVSPEDASDMEDLKRFTRELMTQAEKDLGTKLEWVAVDHWNTDNPHV HHHHHCCHHHEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCEE HVIVRGRADDGRDLVIDRDYIKSGMRDRAQDLITQELSPRTDLDISRALSRQIEAERWTQ EEEEECCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHH LDRQLVRDANEEGVIDVAPSPDRQPDAYLTQKVGRLRHLEHLGLAEAIGPGQWVMAEGAE HHHHHHHCCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHCCCCCEEEECCHH STLRELGQRNDIIKRMHRALDE HHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure PVAGRRMASLDHAGMPVMMPRESDGEMRRDGSSAADVQPKHPVAKMFGPQTDDADVKDF CCCCCHHHHHCCCCCCEECCCCCCCCHHHCCCCCCCCCCCCCHHHHCCCCCCCCHHHHH TERCKDDRHHFRFIVSPEDASDMEDLKRFTRELMTQAEKDLGTKLEWVAVDHWNTDNPHV HHHHHCCHHHEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCEE HVIVRGRADDGRDLVIDRDYIKSGMRDRAQDLITQELSPRTDLDISRALSRQIEAERWTQ EEEEECCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHH LDRQLVRDANEEGVIDVAPSPDRQPDAYLTQKVGRLRHLEHLGLAEAIGPGQWVMAEGAE HHHHHHHCCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHCCCCCEEEECCHH STLRELGQRNDIIKRMHRALDE HHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA