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The map label for this gene is ydcN [H]

Identifier: 75674859

GI number: 75674859

Start: 742325

End: 743104

Strand: Direct

Name: ydcN [H]

Synonym: Nwi_0662

Alternate gene names: 75674859

Gene position: 742325-743104 (Clockwise)

Preceding gene: 75674858

Following gene: 75674860

Centisome position: 21.82

GC content: 59.36

Gene sequence:

>780_bases
GTGCGCAGCGAAATCCGGAGGAGCCTGTGGTCCGTCATCGGCCAGCCAATTCCCATACGCTTTTCCGTTCATGTGGCTGA
CGGTGCCTGTCGTCATTGTGTTCCCGACATGGGTATCAAGGCCCGGATCCACGGAGTCCGGCCCGATCATCGCATGAGCA
AGCTCGGCACGAGCCAGATTTACCATCAAGGCGATGGAAGCGGTCTGGATTGCATTGAACTGCCGGTGATTGTCGGAAAG
AATCTGCGCCGAATCCGGTTGCGGCAAGGTTTGTCGCTCGAGCGACTGGCCAAGCAATCGGGCGTGAGCCGCGCCATGCT
TGGCCAGATCGAAACCGGAAAGAGCACGCCGACCATCGGTCTGCTTTGGAAAATATGCACCTCGCTCACTGTTCCGTTCG
CCAGCCTGATAGCCGTCGGCGATCCGGAAGGAATCATCGTTCTGCGCCGCGACGGATCGAAGCTGTTGTCATCCAATCAG
GGACGGTTCACCTCCCGGGCTCTGTTTCCGTTCGATAGCGAACGACGAACTGAGTTCTATGAACTCCGGCTCGCCCCGCT
CTATTGCGAGAACGCCGAAGCTCATGCGGCGGGGACCCGCGAGAATCTGGTGGTTGCCAAGGGATCGGTCGAAATCGCCG
TCGGATCGGCGCGGCCAACGACTTTGAGCGAGGGAGACGCCATGCTGTTCGAGGCGGACGTTCCGCACGCATACCGCAAT
CTCGGCACAGACGAGGCAGTTCTGTATCTGGTGATGACCTATGCGCAGATGATCGGCTGA

Upstream 100 bases:

>100_bases
AGGGCGAAACGACTCTCGATCGATGCAATTGAAATGGTGAAGCCGTGGGAAAAAGCAGCGCCGCGATTATTGACTTTCAG
CCTTATCTGGAGCGGCGCAG

Downstream 100 bases:

>100_bases
GGCCGGCGCGCAAATCGTCGATGTTTTACGGCCCTCACTCGTCCAGCCTGAAACAAAACAAGGGCAGAACCAGTCTGCCC
TTGTCCGAACTCAACCGGCT

Product: XRE family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 259; Mature: 259

Protein sequence:

>259_residues
MRSEIRRSLWSVIGQPIPIRFSVHVADGACRHCVPDMGIKARIHGVRPDHRMSKLGTSQIYHQGDGSGLDCIELPVIVGK
NLRRIRLRQGLSLERLAKQSGVSRAMLGQIETGKSTPTIGLLWKICTSLTVPFASLIAVGDPEGIIVLRRDGSKLLSSNQ
GRFTSRALFPFDSERRTEFYELRLAPLYCENAEAHAAGTRENLVVAKGSVEIAVGSARPTTLSEGDAMLFEADVPHAYRN
LGTDEAVLYLVMTYAQMIG

Sequences:

>Translated_259_residues
MRSEIRRSLWSVIGQPIPIRFSVHVADGACRHCVPDMGIKARIHGVRPDHRMSKLGTSQIYHQGDGSGLDCIELPVIVGK
NLRRIRLRQGLSLERLAKQSGVSRAMLGQIETGKSTPTIGLLWKICTSLTVPFASLIAVGDPEGIIVLRRDGSKLLSSNQ
GRFTSRALFPFDSERRTEFYELRLAPLYCENAEAHAAGTRENLVVAKGSVEIAVGSARPTTLSEGDAMLFEADVPHAYRN
LGTDEAVLYLVMTYAQMIG
>Mature_259_residues
MRSEIRRSLWSVIGQPIPIRFSVHVADGACRHCVPDMGIKARIHGVRPDHRMSKLGTSQIYHQGDGSGLDCIELPVIVGK
NLRRIRLRQGLSLERLAKQSGVSRAMLGQIETGKSTPTIGLLWKICTSLTVPFASLIAVGDPEGIIVLRRDGSKLLSSNQ
GRFTSRALFPFDSERRTEFYELRLAPLYCENAEAHAAGTRENLVVAKGSVEIAVGSARPTTLSEGDAMLFEADVPHAYRN
LGTDEAVLYLVMTYAQMIG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH cro/C1-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787704, Length=178, Percent_Identity=33.1460674157303, Blast_Score=103, Evalue=2e-23,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013096
- InterPro:   IPR011051
- InterPro:   IPR001387
- InterPro:   IPR010982
- InterPro:   IPR014710 [H]

Pfam domain/function: PF07883 Cupin_2; PF01381 HTH_3 [H]

EC number: NA

Molecular weight: Translated: 28413; Mature: 28413

Theoretical pI: Translated: 9.24; Mature: 9.24

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRSEIRRSLWSVIGQPIPIRFSVHVADGACRHCVPDMGIKARIHGVRPDHRMSKLGTSQI
CHHHHHHHHHHHHCCCCCEEEEEEECCCCHHHCCCCCCCEEEEECCCCCHHHHHHCHHHH
YHQGDGSGLDCIELPVIVGKNLRRIRLRQGLSLERLAKQSGVSRAMLGQIETGKSTPTIG
EECCCCCCCCCEEEHHHHCCCHHHHHHHCCCCHHHHHHHCCCCHHHHCCCCCCCCCCHHH
LLWKICTSLTVPFASLIAVGDPEGIIVLRRDGSKLLSSNQGRFTSRALFPFDSERRTEFY
HHHHHHHHHHCCHHHHEEECCCCCEEEEECCCHHHHCCCCCCEEEEEECCCCCCCCCEEE
ELRLAPLYCENAEAHAAGTRENLVVAKGSVEIAVGSARPTTLSEGDAMLFEADVPHAYRN
EEEEEEEEECCCCCCCCCCCCCEEEECCCEEEEECCCCCCCCCCCCEEEEECCCCHHHHH
LGTDEAVLYLVMTYAQMIG
CCCHHHHHHHHHHHHHHHC
>Mature Secondary Structure
MRSEIRRSLWSVIGQPIPIRFSVHVADGACRHCVPDMGIKARIHGVRPDHRMSKLGTSQI
CHHHHHHHHHHHHCCCCCEEEEEEECCCCHHHCCCCCCCEEEEECCCCCHHHHHHCHHHH
YHQGDGSGLDCIELPVIVGKNLRRIRLRQGLSLERLAKQSGVSRAMLGQIETGKSTPTIG
EECCCCCCCCCEEEHHHHCCCHHHHHHHCCCCHHHHHHHCCCCHHHHCCCCCCCCCCHHH
LLWKICTSLTVPFASLIAVGDPEGIIVLRRDGSKLLSSNQGRFTSRALFPFDSERRTEFY
HHHHHHHHHHCCHHHHEEECCCCCEEEEECCCHHHHCCCCCCEEEEEECCCCCCCCCEEE
ELRLAPLYCENAEAHAAGTRENLVVAKGSVEIAVGSARPTTLSEGDAMLFEADVPHAYRN
EEEEEEEEECCCCCCCCCCCCCEEEECCCEEEEECCCCCCCCCCCCEEEEECCCCHHHHH
LGTDEAVLYLVMTYAQMIG
CCCHHHHHHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]