| Definition | Nitrobacter winogradskyi Nb-255, complete genome. |
|---|---|
| Accession | NC_007406 |
| Length | 3,402,093 |
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The map label for this gene is fptA [H]
Identifier: 75674858
GI number: 75674858
Start: 740713
End: 741852
Strand: Direct
Name: fptA [H]
Synonym: Nwi_0661
Alternate gene names: 75674858
Gene position: 740713-741852 (Clockwise)
Preceding gene: 75674857
Following gene: 75674859
Centisome position: 21.77
GC content: 56.75
Gene sequence:
>1140_bases ATGAGCCAGAACCTCCGTTCCCGTGACCCCGGAACAGTCTCAATTCATCTGACGACGGACACTTTGGGTGCTAATATCAA CAGGCTGGATCTCCACCTGTTGAACCGAAAAAACCTGAGTATGTGGGTAGGATCGATGCGTAACAGCATCTTCCAATACA ACCCTGCCGACTATCCTGCCGGACCCTACGTTCCTAATAACGATAACACCTACAAAATCTTACAGAAAGGCGTGTATGGA TCGTTCGTGGCTCATGTCGCGGACCCTCTGAAGCTGATTTTCGGGGGGCGGTTGAGTTGGTACAGTTACAATAGTGCCAT TAATGCTGTTGACCAGAACACGGGCGCTGTCACCTCCACATCGTTGACGGCATACGAAGACAACAAGGTTTTCACGCCTT ATCTCGGCATGGTTTACGACCTGACCAGTCAATGGTCGGCCTATGCCAGCTTTGCCGAGACCTATCAGCCGCAGGCTTTC AACTTAAGGGGGCCTCTGCCCGGCACTCCGCTTGGCCCTATCACGGGGCGCACCTATGAGGTCGGCGTCAAGGGCAGCCT GCTCGACGGCCGCTTGAACACGACGTTTGCGCTATATCATGTGAAGCGCAACGGTGAGGCGGTGCGGGATTTCGCCTATC CGGCTACTCCGGGCGATCTTGGCACAAATTGCTGCTGGCTCGGTGACGGCCGCATCGTCAGCCAGGGCGTGGATATCGAG GTCAACGGCGAGGTCGCCGCCGGCTGGCAGGTTTCGGCCGGCTATACTTTCAACGACAACGAGAACATAGCGGGCGGCGG CCGCTACAACGCGTTCACACCGAAGCATCTGTTCAAGCTGTGGACGAGTTACGATCTGCAAGGGCCGCTTGAGGGCTTCA AGATCGGCGGCGGCGTGACCGCGCAAAGCTCATTCTACCAGACCGGAACATTCGCCGGGAATCCGTTTAGAATTACCGAG CCGGGCCGCGCGGTGGTGGATCTGTTCGCGCAATACCGTCTCGATGAGCACTGGACCCTGGCTCTCAACGTCAACAACCT GTTCGACAGGACATACTACCAGGCCATCGGAGCTTTCTACCTCGGCAATTTCTACGGCGCGCCACGTAATTTCCTGCTGA GCGCGCGGGCGAGGTTCTAA
Upstream 100 bases:
>100_bases CGGGCAGACCATCCTCACCGAACGCGAAAGGATCAAACGCCAGACCATCCACCAAAGACGCTTGCAGCATCACCTGCAGG CCGCCTAACCTCAAACCCAG
Downstream 100 bases:
>100_bases GCATCACTCGCGGTGGCTTCAGCGCGGCTGCGAACGAGTTCGATGTCAGGCAGCCGATCGTCGGCAGGCGGGGCACGGCC TTCGGGGCCGTTTCCAGTCG
Product: TonB-dependent receptor
Products: NA
Alternate protein names: Fe(III)-pyochelin receptor [H]
Number of amino acids: Translated: 379; Mature: 378
Protein sequence:
>379_residues MSQNLRSRDPGTVSIHLTTDTLGANINRLDLHLLNRKNLSMWVGSMRNSIFQYNPADYPAGPYVPNNDNTYKILQKGVYG SFVAHVADPLKLIFGGRLSWYSYNSAINAVDQNTGAVTSTSLTAYEDNKVFTPYLGMVYDLTSQWSAYASFAETYQPQAF NLRGPLPGTPLGPITGRTYEVGVKGSLLDGRLNTTFALYHVKRNGEAVRDFAYPATPGDLGTNCCWLGDGRIVSQGVDIE VNGEVAAGWQVSAGYTFNDNENIAGGGRYNAFTPKHLFKLWTSYDLQGPLEGFKIGGGVTAQSSFYQTGTFAGNPFRITE PGRAVVDLFAQYRLDEHWTLALNVNNLFDRTYYQAIGAFYLGNFYGAPRNFLLSARARF
Sequences:
>Translated_379_residues MSQNLRSRDPGTVSIHLTTDTLGANINRLDLHLLNRKNLSMWVGSMRNSIFQYNPADYPAGPYVPNNDNTYKILQKGVYG SFVAHVADPLKLIFGGRLSWYSYNSAINAVDQNTGAVTSTSLTAYEDNKVFTPYLGMVYDLTSQWSAYASFAETYQPQAF NLRGPLPGTPLGPITGRTYEVGVKGSLLDGRLNTTFALYHVKRNGEAVRDFAYPATPGDLGTNCCWLGDGRIVSQGVDIE VNGEVAAGWQVSAGYTFNDNENIAGGGRYNAFTPKHLFKLWTSYDLQGPLEGFKIGGGVTAQSSFYQTGTFAGNPFRITE PGRAVVDLFAQYRLDEHWTLALNVNNLFDRTYYQAIGAFYLGNFYGAPRNFLLSARARF >Mature_378_residues SQNLRSRDPGTVSIHLTTDTLGANINRLDLHLLNRKNLSMWVGSMRNSIFQYNPADYPAGPYVPNNDNTYKILQKGVYGS FVAHVADPLKLIFGGRLSWYSYNSAINAVDQNTGAVTSTSLTAYEDNKVFTPYLGMVYDLTSQWSAYASFAETYQPQAFN LRGPLPGTPLGPITGRTYEVGVKGSLLDGRLNTTFALYHVKRNGEAVRDFAYPATPGDLGTNCCWLGDGRIVSQGVDIEV NGEVAAGWQVSAGYTFNDNENIAGGGRYNAFTPKHLFKLWTSYDLQGPLEGFKIGGGVTAQSSFYQTGTFAGNPFRITEP GRAVVDLFAQYRLDEHWTLALNVNNLFDRTYYQAIGAFYLGNFYGAPRNFLLSARARF
Specific function: High-affinity outer membrane receptor required for the transport of Fe(3+)-pyochelin [H]
COG id: COG4773
COG function: function code P; Outer membrane receptor for ferric coprogen and ferric-rhodotorulic acid
Gene ontology:
Cell location: Cell outer membrane [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the tonB-dependent receptor family [H]
Homologues:
Organism=Escherichia coli, GI1787344, Length=337, Percent_Identity=32.3442136498516, Blast_Score=146, Evalue=2e-36, Organism=Escherichia coli, GI1786344, Length=345, Percent_Identity=30.1449275362319, Blast_Score=94, Evalue=2e-20, Organism=Escherichia coli, GI1787024, Length=328, Percent_Identity=27.1341463414634, Blast_Score=81, Evalue=1e-16,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012910 - InterPro: IPR000531 - InterPro: IPR010917 - InterPro: IPR010105 [H]
Pfam domain/function: PF07715 Plug; PF00593 TonB_dep_Rec [H]
EC number: NA
Molecular weight: Translated: 41842; Mature: 41711
Theoretical pI: Translated: 8.14; Mature: 8.14
Prosite motif: PS01156 TONB_DEPENDENT_REC_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 1.6 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 0.8 %Met (Mature Protein) 1.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSQNLRSRDPGTVSIHLTTDTLGANINRLDLHLLNRKNLSMWVGSMRNSIFQYNPADYPA CCCCCCCCCCCEEEEEEEECCCCCCCCEEEEEEECCCCHHHHHHHHHHHHEEECCCCCCC GPYVPNNDNTYKILQKGVYGSFVAHVADPLKLIFGGRLSWYSYNSAINAVDQNTGAVTST CCCCCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHCCEEEEEEECCHHHCCCCCCCCEEEC SLTAYEDNKVFTPYLGMVYDLTSQWSAYASFAETYQPQAFNLRGPLPGTPLGPITGRTYE EEEEECCCEEECHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCEEE VGVKGSLLDGRLNTTFALYHVKRNGEAVRDFAYPATPGDLGTNCCWLGDGRIVSQGVDIE ECCCCEEECCCCCCEEEEEEEECCCCCHHHHCCCCCCCCCCCCEEEECCCEEEECCEEEE VNGEVAAGWQVSAGYTFNDNENIAGGGRYNAFTPKHLFKLWTSYDLQGPLEGFKIGGGVT ECCCEEECEEEECCEEECCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCEEECCCEE AQSSFYQTGTFAGNPFRITEPGRAVVDLFAQYRLDEHWTLALNVNNLFDRTYYQAIGAFY CCCCEEECCCCCCCCEEECCCCHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHHH LGNFYGAPRNFLLSARARF HHHHCCCCCCEEEEECCCC >Mature Secondary Structure SQNLRSRDPGTVSIHLTTDTLGANINRLDLHLLNRKNLSMWVGSMRNSIFQYNPADYPA CCCCCCCCCCEEEEEEEECCCCCCCCEEEEEEECCCCHHHHHHHHHHHHEEECCCCCCC GPYVPNNDNTYKILQKGVYGSFVAHVADPLKLIFGGRLSWYSYNSAINAVDQNTGAVTST CCCCCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHCCEEEEEEECCHHHCCCCCCCCEEEC SLTAYEDNKVFTPYLGMVYDLTSQWSAYASFAETYQPQAFNLRGPLPGTPLGPITGRTYE EEEEECCCEEECHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCEEE VGVKGSLLDGRLNTTFALYHVKRNGEAVRDFAYPATPGDLGTNCCWLGDGRIVSQGVDIE ECCCCEEECCCCCCEEEEEEEECCCCCHHHHCCCCCCCCCCCCEEEECCCEEEECCEEEE VNGEVAAGWQVSAGYTFNDNENIAGGGRYNAFTPKHLFKLWTSYDLQGPLEGFKIGGGVT ECCCEEECEEEECCEEECCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCEEECCCEE AQSSFYQTGTFAGNPFRITEPGRAVVDLFAQYRLDEHWTLALNVNNLFDRTYYQAIGAFY CCCCEEECCCCCCCCEEECCCCHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHHH LGNFYGAPRNFLLSARARF HHHHCCCCCCEEEEECCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 8288523; 10984043 [H]