| Definition | Nitrobacter winogradskyi Nb-255, complete genome. |
|---|---|
| Accession | NC_007406 |
| Length | 3,402,093 |
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The map label for this gene is fpvA [H]
Identifier: 75674855
GI number: 75674855
Start: 737772
End: 739295
Strand: Direct
Name: fpvA [H]
Synonym: Nwi_0658
Alternate gene names: 75674855
Gene position: 737772-739295 (Clockwise)
Preceding gene: 75674854
Following gene: 75674856
Centisome position: 21.69
GC content: 60.5
Gene sequence:
>1524_bases ATGAGGCAGGGCGACCTGAACGGCGGCAGCGGACGCGGCGAACGCGTGATAAGAGGACGACGTTATCTATCGTTCCTGCT CTCCACGGCAATGATCGGTTTTACCGGAATGCTCGGCGTTGCGCCTGCGTGCGCGCAACAAACGCGCCAGGCGGTGACTT CCCAGCCGGTGAATTTCTCGATTCCCGCGCAGCCGCTGTCATCGGCGATCAACGCATTCATCCGCGCAACGGGCTGGCAG ATCAGCTACTCGTCGCAGCTTGTACATGGCAAGACATCGGTCGCCGTGGTCGGCGCCATGCCGCCATCGGCGGCGCTGCA GCGCCTCGTTTCGGGCACCGGGCTCAGCGTACGGATGGGTGGTTCGGGTTCCGCCGCATTGGTCGGCGCGGCCGGCGCGG CCGATGCGGCGGTTGCCCCGGTCGCCGGCGCGATCTCGCTCGACACCATCGATGTGCAGGGCGCGACGTCGAGCGATCCC GGCAGGACCGAGGGCACCGGCTCCTACACGACCAGCGTGGCGTCGTTCGGCAAGAATCAAACGCTAAAAGAAACGCCGCA GACAGTCTCGGTCATCACGCGCCAGCGCATTCAGGATCAGGGAATGACGACGATGGAGCATGCGCTGGAGCGCACACCCG GCATCACCGTCGTGCCATACAGCACCACAGATTCAACTATATATTCCCGAGGTTTTCCTGTCACAAACCTTCAGATCGAC GGCAACAGCCCGCAATTTGGAGGAAGCATGATAGGTCAGGGCTTCACCACATCCCAGTTTGACCTCGCTATGTTCGATCG CGTCGAGGTCCTGCGCGGCTCCGACGCGCTCTACGGCACCTCGGGCGCACCGGGCGGCGCAATTAATCTTGTGCGCAAGA AGCCGACCAAACAGTTCCAGATGAACGCGCTGCTCCACGGCGGAAGCTGGAACAACTATCGTGGCGAACTGGATGTCGGC GGTTCGCTCACCGAGAACGGTGCGGTTCGCGGGCGCTTTGTCGGGACCTATCAGGATCAGAATTTTTTCTACAATCACGG CAAGAGCAACAGGTATCTGCTTTATGGTATCATCGAAGCTGATATCACCGACAGCACCATGCTCACCTTCGGCGCCAATG TCATGCGCCAGGATCAGGCTGGATTTTTCCGTGGGCTTCCGCGCTATGCGAACGGTGACGACCTCGGCCTGCCGCGCAGC TTCTCTCTCAATCGGCCCGAGGACACCTGGCTGCTCAACAACAATATGATGTTCATCCGCCTCGATCAGGAACTCGCACC CAACTGGACCCTGGGCGTCGAGGCGACGCGCTCGATCAACGAGATTTTTCGCCGGGACTTAACCTGGCAGGGAGGGATCA ATCCGATCACTGGCATGGGTCTGACCGGCTATGATTGGGAGTACGATTACCGTGCACCGCAGTTCACGCTCGACGCTGTG CTGAAAGGATCGTTCGATCTGTTGGGCAGGGAGCAGAAGCTGACTTTGGGTGTGTCCGCCGTCAGGGCTCTTGAGACAGT TTAG
Upstream 100 bases:
>100_bases TTTGCCGGATCGCCTCTTGTCGAACGTCATCTGTTCGAGGGCGAGGCGCGCACGCAGCGCGGGACCGACCCTCGATTGAA TCAGAGGGCGGGGCTTGAAG
Downstream 100 bases:
>100_bases GGGTTTTCGGGAAGGGAGGATTTCTGGATCATCGCAGCCAATTTGGAGCGCAGATGAGACAGAAATCCGGGCCGGAGAAA GCACCGGCAGAGCAGGTCGT
Product: secretin/TonB
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 507; Mature: 507
Protein sequence:
>507_residues MRQGDLNGGSGRGERVIRGRRYLSFLLSTAMIGFTGMLGVAPACAQQTRQAVTSQPVNFSIPAQPLSSAINAFIRATGWQ ISYSSQLVHGKTSVAVVGAMPPSAALQRLVSGTGLSVRMGGSGSAALVGAAGAADAAVAPVAGAISLDTIDVQGATSSDP GRTEGTGSYTTSVASFGKNQTLKETPQTVSVITRQRIQDQGMTTMEHALERTPGITVVPYSTTDSTIYSRGFPVTNLQID GNSPQFGGSMIGQGFTTSQFDLAMFDRVEVLRGSDALYGTSGAPGGAINLVRKKPTKQFQMNALLHGGSWNNYRGELDVG GSLTENGAVRGRFVGTYQDQNFFYNHGKSNRYLLYGIIEADITDSTMLTFGANVMRQDQAGFFRGLPRYANGDDLGLPRS FSLNRPEDTWLLNNNMMFIRLDQELAPNWTLGVEATRSINEIFRRDLTWQGGINPITGMGLTGYDWEYDYRAPQFTLDAV LKGSFDLLGREQKLTLGVSAVRALETV
Sequences:
>Translated_507_residues MRQGDLNGGSGRGERVIRGRRYLSFLLSTAMIGFTGMLGVAPACAQQTRQAVTSQPVNFSIPAQPLSSAINAFIRATGWQ ISYSSQLVHGKTSVAVVGAMPPSAALQRLVSGTGLSVRMGGSGSAALVGAAGAADAAVAPVAGAISLDTIDVQGATSSDP GRTEGTGSYTTSVASFGKNQTLKETPQTVSVITRQRIQDQGMTTMEHALERTPGITVVPYSTTDSTIYSRGFPVTNLQID GNSPQFGGSMIGQGFTTSQFDLAMFDRVEVLRGSDALYGTSGAPGGAINLVRKKPTKQFQMNALLHGGSWNNYRGELDVG GSLTENGAVRGRFVGTYQDQNFFYNHGKSNRYLLYGIIEADITDSTMLTFGANVMRQDQAGFFRGLPRYANGDDLGLPRS FSLNRPEDTWLLNNNMMFIRLDQELAPNWTLGVEATRSINEIFRRDLTWQGGINPITGMGLTGYDWEYDYRAPQFTLDAV LKGSFDLLGREQKLTLGVSAVRALETV >Mature_507_residues MRQGDLNGGSGRGERVIRGRRYLSFLLSTAMIGFTGMLGVAPACAQQTRQAVTSQPVNFSIPAQPLSSAINAFIRATGWQ ISYSSQLVHGKTSVAVVGAMPPSAALQRLVSGTGLSVRMGGSGSAALVGAAGAADAAVAPVAGAISLDTIDVQGATSSDP GRTEGTGSYTTSVASFGKNQTLKETPQTVSVITRQRIQDQGMTTMEHALERTPGITVVPYSTTDSTIYSRGFPVTNLQID GNSPQFGGSMIGQGFTTSQFDLAMFDRVEVLRGSDALYGTSGAPGGAINLVRKKPTKQFQMNALLHGGSWNNYRGELDVG GSLTENGAVRGRFVGTYQDQNFFYNHGKSNRYLLYGIIEADITDSTMLTFGANVMRQDQAGFFRGLPRYANGDDLGLPRS FSLNRPEDTWLLNNNMMFIRLDQELAPNWTLGVEATRSINEIFRRDLTWQGGINPITGMGLTGYDWEYDYRAPQFTLDAV LKGSFDLLGREQKLTLGVSAVRALETV
Specific function: Receptor for the siderophore ferripyoverdine [H]
COG id: COG4773
COG function: function code P; Outer membrane receptor for ferric coprogen and ferric-rhodotorulic acid
Gene ontology:
Cell location: Cell outer membrane [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the tonB-dependent receptor family [H]
Homologues:
Organism=Escherichia coli, GI1787344, Length=392, Percent_Identity=31.8877551020408, Blast_Score=157, Evalue=1e-39, Organism=Escherichia coli, GI1786344, Length=320, Percent_Identity=24.0625, Blast_Score=69, Evalue=5e-13,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012910 - InterPro: IPR011662 - InterPro: IPR000531 - InterPro: IPR010917 - InterPro: IPR010105 [H]
Pfam domain/function: PF07715 Plug; PF07660 STN; PF00593 TonB_dep_Rec [H]
EC number: NA
Molecular weight: Translated: 54406; Mature: 54406
Theoretical pI: Translated: 8.78; Mature: 8.78
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRQGDLNGGSGRGERVIRGRRYLSFLLSTAMIGFTGMLGVAPACAQQTRQAVTSQPVNFS CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCEE IPAQPLSSAINAFIRATGWQISYSSQLVHGKTSVAVVGAMPPSAALQRLVSGTGLSVRMG CCCHHHHHHHHHHHHHCCCEEEECCEEEECCCEEEEEECCCHHHHHHHHHCCCCCEEEEC GSGSAALVGAAGAADAAVAPVAGAISLDTIDVQGATSSDPGRTEGTGSYTTSVASFGKNQ CCCCEEEEECCCCCCCHHHCCCCEEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHCCCCC TLKETPQTVSVITRQRIQDQGMTTMEHALERTPGITVVPYSTTDSTIYSRGFPVTNLQID CHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHCCCEEEEEECCCCCCCEECCCCEEEEEEC GNSPQFGGSMIGQGFTTSQFDLAMFDRVEVLRGSDALYGTSGAPGGAINLVRKKPTKQFQ CCCCCCCCHHHCCCCCCCCCHHHHHHHHHHHCCCCCEEECCCCCCCEEEEEECCCCHHEE MNALLHGGSWNNYRGELDVGGSLTENGAVRGRFVGTYQDQNFFYNHGKSNRYLLYGIIEA EEEEEECCCCCCCCCEEECCCCCCCCCCEEEEEEEEEECCCEEEECCCCCCEEEEEEEEC DITDSTMLTFGANVMRQDQAGFFRGLPRYANGDDLGLPRSFSLNRPEDTWLLNNNMMFIR CCCCCCHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCEEEEE LDQELAPNWTLGVEATRSINEIFRRDLTWQGGINPITGMGLTGYDWEYDYRAPQFTLDAV ECHHHCCCEEECCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEHHHH LKGSFDLLGREQKLTLGVSAVRALETV HCCCHHHCCCCCEEEHHHHHHHHHHCC >Mature Secondary Structure MRQGDLNGGSGRGERVIRGRRYLSFLLSTAMIGFTGMLGVAPACAQQTRQAVTSQPVNFS CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCEE IPAQPLSSAINAFIRATGWQISYSSQLVHGKTSVAVVGAMPPSAALQRLVSGTGLSVRMG CCCHHHHHHHHHHHHHCCCEEEECCEEEECCCEEEEEECCCHHHHHHHHHCCCCCEEEEC GSGSAALVGAAGAADAAVAPVAGAISLDTIDVQGATSSDPGRTEGTGSYTTSVASFGKNQ CCCCEEEEECCCCCCCHHHCCCCEEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHCCCCC TLKETPQTVSVITRQRIQDQGMTTMEHALERTPGITVVPYSTTDSTIYSRGFPVTNLQID CHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHCCCEEEEEECCCCCCCEECCCCEEEEEEC GNSPQFGGSMIGQGFTTSQFDLAMFDRVEVLRGSDALYGTSGAPGGAINLVRKKPTKQFQ CCCCCCCCHHHCCCCCCCCCHHHHHHHHHHHCCCCCEEECCCCCCCEEEEEECCCCHHEE MNALLHGGSWNNYRGELDVGGSLTENGAVRGRFVGTYQDQNFFYNHGKSNRYLLYGIIEA EEEEEECCCCCCCCCEEECCCCCCCCCCEEEEEEEEEECCCEEEECCCCCCEEEEEEEEC DITDSTMLTFGANVMRQDQAGFFRGLPRYANGDDLGLPRSFSLNRPEDTWLLNNNMMFIR CCCCCCHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCEEEEE LDQELAPNWTLGVEATRSINEIFRRDLTWQGGINPITGMGLTGYDWEYDYRAPQFTLDAV ECHHHCCCEEECCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEHHHH LKGSFDLLGREQKLTLGVSAVRALETV HCCCHHHCCCCCEEEHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 8335619; 8918232; 10984043 [H]