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The map label for this gene is cycM [H]

Identifier: 75674485

GI number: 75674485

Start: 324262

End: 324819

Strand: Direct

Name: cycM [H]

Synonym: Nwi_0287

Alternate gene names: 75674485

Gene position: 324262-324819 (Clockwise)

Preceding gene: 75674479

Following gene: 75674486

Centisome position: 9.53

GC content: 61.29

Gene sequence:

>558_bases
ATGATCAATAAATTTATTGGTGCGGTTCTGGGCACCTGCCTCGTTTTGCTGGTCATGAATTTAATCGCGCGGGCGGTTTT
CGCGCCGGCCGTGCCGGCGAAGCCGGGCTATAAAATCGACGTCAAGGAAGAGCCGGCGGCCGTTCAGAAGGACGACAAGC
CGGTGGCCGCGAGCAAGGCTGCGGCCGCAAGTAAGGAAGCCGACGTCGCGGCGGCGGTGTCGCTGGGGAAGAGGCTGCAA
GCCGCTTCGGCCGAGAACGGCGCTGTCGTCGCCAAGAAATGCGCCGCCTGCCATACCTTCGAGAAGGGCGGACCGAACCG
CGTCGGCCCTAATCTTTACGGCATCGTCGGCGAGCCGCGCGGCCAGGGTCATGACTTCAATTTCTCGGCGGCCATGAAGG
CCAAGGGCGGCACCTGGACGCTCGATGAACTGGACAAGTTTCTGGCCAACCCGAAGGAATACATTCCGGGGACGGCGATG
TCTTTTGTCGGCGTTCCGAAGGACAGCGACCGTGCCGACCTCATTGCCTATCTGCGCAAGAATTCCGACAAGCCATAG

Upstream 100 bases:

>100_bases
CCGCCTCCGCGAGGACGTCTCGGCGGCGTTTCCGTGGTCGTTCAGCCGGCCGTGCGGTCGACTTTCGAGCGTGGAGCCTT
GCCGCGAATGGACTCCCTCG

Downstream 100 bases:

>100_bases
AGCCTCGCTTTCGATGGAATCAGAAGCGAGGCTCTATGATCTTGTTTTGACGCGTTTTCTTCACGCGAACCGGTTTCCAC
TTCGCTCGAAAACGCTATAG

Product: cytochrome c, class I

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 185; Mature: 185

Protein sequence:

>185_residues
MINKFIGAVLGTCLVLLVMNLIARAVFAPAVPAKPGYKIDVKEEPAAVQKDDKPVAASKAAAASKEADVAAAVSLGKRLQ
AASAENGAVVAKKCAACHTFEKGGPNRVGPNLYGIVGEPRGQGHDFNFSAAMKAKGGTWTLDELDKFLANPKEYIPGTAM
SFVGVPKDSDRADLIAYLRKNSDKP

Sequences:

>Translated_185_residues
MINKFIGAVLGTCLVLLVMNLIARAVFAPAVPAKPGYKIDVKEEPAAVQKDDKPVAASKAAAASKEADVAAAVSLGKRLQ
AASAENGAVVAKKCAACHTFEKGGPNRVGPNLYGIVGEPRGQGHDFNFSAAMKAKGGTWTLDELDKFLANPKEYIPGTAM
SFVGVPKDSDRADLIAYLRKNSDKP
>Mature_185_residues
MINKFIGAVLGTCLVLLVMNLIARAVFAPAVPAKPGYKIDVKEEPAAVQKDDKPVAASKAAAASKEADVAAAVSLGKRLQ
AASAENGAVVAKKCAACHTFEKGGPNRVGPNLYGIVGEPRGQGHDFNFSAAMKAKGGTWTLDELDKFLANPKEYIPGTAM
SFVGVPKDSDRADLIAYLRKNSDKP

Specific function: May be involved in electron transfer from bc1 complex to aa3 [H]

COG id: COG3474

COG function: function code C; Cytochrome c2

Gene ontology:

Cell location: Cell membrane; Single-pass type II membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome c family [H]

Homologues:

Organism=Homo sapiens, GI11128019, Length=92, Percent_Identity=52.1739130434783, Blast_Score=108, Evalue=2e-24,
Organism=Caenorhabditis elegans, GI17539604, Length=105, Percent_Identity=42.8571428571429, Blast_Score=87, Evalue=4e-18,
Organism=Caenorhabditis elegans, GI17566554, Length=90, Percent_Identity=41.1111111111111, Blast_Score=79, Evalue=1e-15,
Organism=Saccharomyces cerevisiae, GI6322508, Length=103, Percent_Identity=47.5728155339806, Blast_Score=108, Evalue=7e-25,
Organism=Saccharomyces cerevisiae, GI6320796, Length=103, Percent_Identity=46.6019417475728, Blast_Score=106, Evalue=2e-24,
Organism=Drosophila melanogaster, GI17137228, Length=100, Percent_Identity=50, Blast_Score=106, Evalue=9e-24,
Organism=Drosophila melanogaster, GI17137204, Length=104, Percent_Identity=48.0769230769231, Blast_Score=105, Evalue=1e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002327
- InterPro:   IPR009056
- InterPro:   IPR003088 [H]

Pfam domain/function: PF00034 Cytochrom_C [H]

EC number: NA

Molecular weight: Translated: 19368; Mature: 19368

Theoretical pI: Translated: 9.64; Mature: 9.64

Prosite motif: PS51007 CYTC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MINKFIGAVLGTCLVLLVMNLIARAVFAPAVPAKPGYKIDVKEEPAAVQKDDKPVAASKA
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCCCCCCCCCCCCCCHHHHH
AAASKEADVAAAVSLGKRLQAASAENGAVVAKKCAACHTFEKGGPNRVGPNLYGIVGEPR
HHHCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCC
GQGHDFNFSAAMKAKGGTWTLDELDKFLANPKEYIPGTAMSFVGVPKDSDRADLIAYLRK
CCCCCCCCCEEEECCCCCCCHHHHHHHHCCCHHHCCCCHHHEECCCCCCCHHHHHHHHHH
NSDKP
CCCCC
>Mature Secondary Structure
MINKFIGAVLGTCLVLLVMNLIARAVFAPAVPAKPGYKIDVKEEPAAVQKDDKPVAASKA
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCCCCCCCCCCCCCCHHHHH
AAASKEADVAAAVSLGKRLQAASAENGAVVAKKCAACHTFEKGGPNRVGPNLYGIVGEPR
HHHCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCC
GQGHDFNFSAAMKAKGGTWTLDELDKFLANPKEYIPGTAMSFVGVPKDSDRADLIAYLRK
CCCCCCCCCEEEECCCCCCCHHHHHHHHCCCHHHCCCCHHHEECCCCCCCHHHHHHHHHH
NSDKP
CCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 1657867; 12597275 [H]